BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485194
Length=1268
Score E
Sequences producing significant alignments: (Bits) Value
AT3G48350.1 | Symbols: | Cysteine proteinases superfamily prot... 1810 0.0
> AT3G48350.1 | Symbols: | Cysteine proteinases superfamily protein
| chr3:17905725-17907561 FORWARD LENGTH=1313
Length=1313
Score = 1810 bits (980), Expect = 0.0
Identities = 1122/1190 (94%), Gaps = 11/1190 (1%)
Strand=Plus/Plus
Query 1 CAACAAGAAGAATCCAAAGACATGAAACTTTTCTTTATTG-T-TC-TCTCTTTTCTTTGC 57
||| |||||||||||||||||||||||||||||||||||| | || |||||||||||| |
Sbjct 7 CAAGAAGAAGAATCCAAAGACATGAAACTTTTCTTTATTGTTCTCATCTCTTTTCTTTCC 66
Query 58 CTCCTCCAAGCATCAAAAGGATTCGATTTCGACGAAAAAGAATTAGAGACCGAAGAGAAC 117
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 67 CTCCTCCAAGCATCAAAAGGATTCGATTTCGACGAAAAAGAATTAGAAACCGAAGAGAAC 126
Query 118 GTATGGAAGCTCTATGAGAGGTGGAGAGACCACCACTCTGTAACGAGAGCCTCCCACGAG 177
|||||||||||||||||||||||||||| ||||||||||||| | |||||||||||||||
Sbjct 127 GTATGGAAGCTCTATGAGAGGTGGAGAGGCCACCACTCTGTATCCAGAGCCTCCCACGAG 186
Query 178 GCACTAAAGCGGTTCAACGTTTTTAGACACAACGTGCTTCATGTCCACAGAACGAACAAG 237
||| |||||||||||||||||||||||||||| || |||||||||||||| || |||||
Sbjct 187 GCAATAAAGCGGTTCAACGTTTTTAGACACAATGTCCTTCATGTCCACAGGACTAACAAA 246
Query 238 AAGAACAAGCCTTACAAACTCAAGGTCAACAGATTCGCCGACATAACTCACCACGAGTTT 297
|||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||
Sbjct 247 AAGAACAAGCCTTACAAACTCAAGATCAATAGATTCGCCGACATAACGCACCACGAGTTT 306
Query 298 AGAAGCTCCTACGCTGGCTCAAATGTTAAGCATCACCGGATGCTTCGTGGACCGAAGCGC 357
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 307 AGAAGCTCCTACGCTGGCTCTAATGTTAAGCATCACCGAATGCTTCGTGGACCGAAGCGC 366
Query 358 GGATCTGGTGGTTTCATGTATGAGAATGTAACAAGAGTTCCGAGTTCTGTTGATTGGAGA 417
||||||||||||||||||||||||||||| || |||||||||||||||||||||||| ||
Sbjct 367 GGATCTGGTGGTTTCATGTATGAGAATGTGACCAGAGTTCCGAGTTCTGTTGATTGGCGA 426
Query 418 GAGAAAGGAGCTGTCACTGAAGTCAAGAATCAACAAGATTGTGGAAGTTGCTGGGCGTTT 477
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 427 GAGAAAGGAGCTGTCACTGAGGTCAAGAATCAACAAGATTGTGGAAGTTGCTGGGCGTTT 486
Query 478 TCGACGGTTGCAGCAGTAGAAGGGATAAACAAGATCAGAACAAACAAACTGGTTTCATTG 537
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 487 TCGACGGTTGCAGCAGTGGAAGGGATAAACAAGATCAGAACAAACAAACTGGTTTCATTG 546
Query 538 TCTGAACAAGAGCTAGTTGATTGTGACACTGAAGAGAATCAAGGTTGTGCAGGAGGTCTC 597
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 547 TCTGAACAAGAGCTTGTGGATTGTGACACTGAAGAGAATCAAGGTTGTGCAGGAGGTCTC 606
Query 598 ATGGAACCTGCGTTTGAATTCATAAAGAACAATGGTGGCATCAAAACCGAAGAGACTTAC 657
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 607 ATGGAACCTGCGTTTGAATTTATAAAGAACAATGGTGGCATCAAAACCGAAGAGACTTAT 666
Query 658 CCTTACGACTCCAATGATGTTCAATTCTGCAGAGCTAAGAGTATTGATGGAGAAACTGTA 717
|||||||| |||| ||| ||||||||||| |||||||| ||||||| |||||||||||||
Sbjct 667 CCTTACGATTCCAGTGACGTTCAATTCTGTAGAGCTAATAGTATTGGTGGAGAAACTGTA 726
Query 718 ACGATTGATGGACACGAACACGTCCCTGAGAATGATGAGGAAGCACTTCTCAAAGCTGTT 777
|| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 727 ACCATCGATGGACACGAACACGTCCCTGAGAATGATGAGGAAGAACTTCTCAAAGCTGTT 786
Query 778 GCTCACCAGCCTGTCTCTGTAGCTATTGATGCTGGGAGCTCAGATTTCCAGCTTTACTCT 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 787 GCTCACCAGCCTGTCTCTGTAGCTATTGATGCTGGGAGCTCAGATTTCCAGCTTTACTCT 846
Query 838 GAGGGTGTGTTTATCGGAGAGTGCGGGACTCAGTTAAACCACGGGGTGGTGATTGTCGGG 897
|||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||
Sbjct 847 GAGGGTGTGTTTATCGGAGAATGCGGGACTCAGTTGAACCACGGGGTGGTGATTGTTGGG 906
Query 898 TATGGAGAGACCAAAAATGGAACAAAATATTGGATAGTGAGGAACTCATGGGGACCGGAA 957
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 907 TATGGAGAGACCAAAAATGGAACAAAATATTGGATAGTAAGGAACTCATGGGGACCTGAA 966
Query 958 TGGGGAGAAGGAGGTTATGTTCGGATAGAAAGAAAAATATCTGAGAATGAAGGACGTTGT 1017
|||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||
Sbjct 967 TGGGGAGAAGGAGGCTATGTTCGGATAGAAAGAGGAATATCGGAGAATGAAGGACGTTGC 1026
Query 1018 GGTATAGCCATGGAGGCTTCTTATCCCACCAAGGTTTCTTCCACTCCCTCTACTCCTGAG 1077
||||||||||||||||||||||||||||||||| | ||||| ||||| ||||||| ||||
Sbjct 1027 GGTATAGCCATGGAGGCTTCTTATCCCACCAAGCTCTCTTCGACTCCTTCTACTCATGAG 1086
Query 1078 TCAGTAGTTCGCGATGATTTTAAAGACGAACTCTAGTCTCTAGAGACTCTAAGTCATTGA 1137
||||||||||| |||||| |||||||||| | ||||||||||| |||||||||||
Sbjct 1087 TCAGTAGTTCGTGATGATGTTAAAGACGA------G-CTCTAGAGACTTTAAGTCATTGA 1139
Query 1138 AAACTGGATTTC-AACGATTCTTCTAGTGATCTTACACTAAGTTTATTAT 1186
|||||| ||||| ||| ||||||||||||| |||||||| ||||||||||
Sbjct 1140 AAACTGAATTTCGAACCATTCTTCTAGTGAGCTTACACTGAGTTTATTAT 1189
Score = 122 bits (66), Expect = 6e-27
Identities = 80/86 (93%), Gaps = 3/86 (3%)
Strand=Plus/Plus
Query 1183 TTATCGTGTATTCATCTTAAATTGAGACGAGTTTTATCTCCTTTTAATATTGGCCAGCAT 1242
|||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 1227 TTATCGTGTATTCATCTTAAATTGAGACGATTTTTATCTCCTTGTAATATTGGCCAGCAT 1286
Query 1243 ATATTCCTTTGCGGAAAAATGGCGTT 1268
| | | |||||||||||||||||||
Sbjct 1287 -T-TGC-TTTGCGGAAAAATGGCGTT 1309
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62349076890
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5