BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485198
Length=2061
Score E
Sequences producing significant alignments: (Bits) Value
AT3G48380.3 | Symbols: | Peptidase C78, ubiquitin fold modifie... 2495 0.0
> AT3G48380.3 | Symbols: | Peptidase C78, ubiquitin fold modifier-specific
peptidase 1/ 2 | chr3:17916416-17920234 FORWARD
LENGTH=2149
Length=2149
Score = 2495 bits (1351), Expect = 0.0
Identities = 1622/1751 (93%), Gaps = 26/1751 (1%)
Strand=Plus/Plus
Query 1 AAACTGATTTTGGCTGTTTGGTTTTGGATCCGAGATGGTTCCTTCGAGCGAGACAGCGAC 60
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 19 AAACTGATTTTGCCTGTTTGGTTTTGGATCCGAGATGGTTCCTTCGAGCGAGACAGCGAC 78
Query 61 CGTACGAGTCCTTTGCCAAAAGCTGCTTCTCTCAGGGAACCAACCTGGAACTCTTCAATG 120
|||||||||||||||||||||||||||||||||| |||||| ||||||||||| |||||
Sbjct 79 CGTACGAGTCCTTTGCCAAAAGCTGCTTCTCTCACCGAACCATCCTGGAACTCTCCAATG 138
Query 121 GCTCATTGGTTCCCCATTTTTCCCGCCTTTCACCGTCGTCTCCACTTTCCGATGTATCCA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 139 GCTCATTGGTTCCCCATTTTTCCCGCCTTTCACCGTCGTCTCCACTTTCCGATGTATCCA 198
Query 181 TCACTCTCCTGATTTCCAGCAAGAATCTGATGATCTCCGGAAGTTGTTACCAAAAGGTTT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 199 TCACTCTCCTGATTTCCAGCAAGAATCTGATGATCTCCGGAAGTTGTTACCAAAAGGTTT 258
Query 241 TGAAGTTATTGGAGGTCTGATTGTTGGGGATTCTGATGCTGAGAAAACCGCATTTGAGGC 300
|||||| |||||||||||||| |||| ||||||||||||||||||| ||||||||||||
Sbjct 259 TGAAGTCATTGGAGGTCTGATAATTGGAGATTCTGATGCTGAGAAAAGCGCATTTGAGGC 318
Query 301 GGTTCGAGCTGCTCGTAGATTGCGAAAGCATTTATCTGAAGGCGGAGAGTTAGATGATGA 360
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 319 GGTTCGAGCTGCTCGTAGATTGCGAAAGCATTTATCTGAAGGTGGAGAGTTAGATGATGA 378
Query 361 AAAGATAGTTGGGGCTAGTTGCGATGCAGGAACTGGTACCATTCACTTTTTCATCTCTAA 420
|||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 379 AAAGATAGTTGGGGCTAGTTGCGATGTAGGCACTGGTACCATTCACTTTTTCATCTCTAA 438
Query 421 AAGTGAAAACTTAAC-AAAGCTAGAGCCTGTTGGTTCCGTTGTGTATGAGGAGAAGTCTG 479
|||||||||| ||| ||| || |||||||||||||| |||||||||||||| |||||||
Sbjct 439 AAGTGAAAACACAACGAAA-CTTGAGCCTGTTGGTTCTGTTGTGTATGAGGATAAGTCTG 497
Query 480 AGAAA-TATCTATGGGAGAACGGTTGCTTGCTTCACTGTGAGCTTCCGATCAAGTTGCCA 538
|||| ||| |||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 498 -GAAAGTATTTATGGGAGAACGGTTGTTTGCTTCACTGTGAGCTTCCAATCAAGTTGCCA 556
Query 539 TTCTATT-TCCCCGCAAGCTCGCCCTCTGATTCGAAGGAGAAGTTTTCAGATGCAATTGA 597
|| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 557 TTTTATTATCCT-GCAAGCTCGCCCTCTGATTCGAAGGAGAAGTTTTCAGATGCAATTGA 615
Query 598 TGCAGTTATTACTCAGTTTAAAGAACCATATGCTGTATACATAGCCGAGACCTTAAAGAA 657
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 616 TGCAGTTATTACTCAGTTTAAAGAACCATATGTTGTATACATAGCTGAGACCTTAAAGAA 675
Query 658 AGCTTCTGGAGATGTTCCAAAGCCAGTCGTCCTCCGCGGTAAAGATTTGGGTTTTGGTGC 717
||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 676 AGCTTCTGGAGGCGTTCCAAAGCCAGTCGTCCTCCGTGGTAAAGATTTGGGTTTTGGTGC 735
Query 718 TGATGCATCAAACATTAACCGTCTTCCTTCTGCTGACCAAGTATCTCACACTAAGATGTT 777
|||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||
Sbjct 736 TGATGCATCAAACATTAATCGTCTTCCTTCTGCTGACCAAGTATCTGACATTAAGATGTT 795
Query 778 GTCATGTTCCCATTTCTTTCTGAACAGCAAAACTGCTGCAGCAGTTAATTCAGCTGAGAA 837
|||||| || ||||| | |||||| | |||||||||| ||||||| ||||| ||||||||
Sbjct 796 GTCATGCTCACATTTGTGTCTGAATAACAAAACTGCTCCAGCAGTAAATTCGGCTGAGAA 855
Query 838 TGCAGATAAAATCCACATATCTGTTCTGCTTAATCGATCTGAAAAATCT-CCGACCTCTG 896
|||||||||||||||||||||||||||||||||| ||||||||||| || || |||||||
Sbjct 856 TGCAGATAAAATCCACATATCTGTTCTGCTTAATAGATCTGAAAAA-CTTCCAACCTCTG 914
Query 897 GTGCCCCTGTTGCAGAATATTTTCCAGCTATGGAAGAAGCAAGGCTCATTGTTGTTGATT 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 915 GTGCCCCTGTTGCAGAATATTTTCCAGCTATGGAAGAAGCAAGGCTCATTGTTGTTGATT 974
Query 957 TGAATCTTGATGTACTTGTTTATGCACCCAAGGATCTTCCACTTATGCACGCTGTCTCAA 1016
||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 975 TGAATCTTGATGTACTTACTTATGCACCCAAGGATCTTCCACTTATGCACGCAGTCTCAA 1034
Query 1017 ATTTAGTTATCCCTGCTTTGGTTGATCAGTTATATTCACTGAAGAAGATCATCTTACCTT 1076
|||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1035 ATTTAGTTATTCCTGCTTTGGTTGATCAGTTATATTCCCTGAAGAAGATTATCTTACCAC 1094
Query 1077 ACCTCTTGATG-----T--T-A----CGAATATATCACTTCAATCCACCTGGAGTATTAC 1124
|||||||| || | | | || ||||||||||| |||||||| || |||||||
Sbjct 1095 ACCTCTTGGTGGAACATCCTCAGTTGCGTATATATCACTTTAATCCACCCGGGGTATTAC 1154
Query 1125 ATCCAATAACGACTATATACGAGCTTAACTATGGGGAGACTGAAATGAAGCAAGTCGATG 1184
|||||||||| | ||| |||||||| ||||| || ||||| |||||||||||||||||||
Sbjct 1155 ATCCAATAACAAGTATGTACGAGCTCAACTACGGAGAGACAGAAATGAAGCAAGTCGATG 1214
Query 1185 TTAGAAAATCT-CTACACTTAAGGCT-GGATTTGCCACTGGATCGTCCACTCCTAAGAAC 1242
||||||||| | |||||||| ||||| || | ||||||||||||| || || ||||||
Sbjct 1215 TTAGAAAAT-TGCTACACTTGAGGCTTGG-TCTGCCACTGGATCGCCCTCTTTTAAGAAT 1272
Query 1243 TGCTAATGCCTTGGATTTGTCTGTGAATGATGATTCAAGGGGTAACATAAAGAAAAGGGG 1302
||||||||||||||||||||||||||||||||| |||| | ||||||| || | ||||||
Sbjct 1273 TGCTAATGCCTTGGATTTGTCTGTGAATGATGACTCAAAGAGTAACATGAACAGAAGGGG 1332
Query 1303 TTCCTTCTTGCTCAAAGATGTGCATATTGGAATCCCTAGCAGTGGAGTCGCGGAGGGTGT 1362
|||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1333 TTCCACCTTGCTCAAAGATGTGCATATTGGAATCCCTAGCAGCGGAGTTTCGGAGGGTGT 1392
Query 1363 TGCATCAATTATCCAAGGTTCTTATGAGTATTATCATTATCTCCAGGATAGCTTTGATGA 1422
||||| ||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 1393 GGCATCTATTATCCAAGGTTCTTATGAGTATTATCATTATCTTCAGGATGGCTTTGATGA 1452
Query 1423 CTCGGGATGGGGCTGTGCTTACCGATCACTGCAAACTATCATCTCGTGGTTCAGACTTCA 1482
|||||||||||| ||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 1453 CTCGGGATGGGGATGTGCTTACCGATCATTGCAAACTATTATCTCGTGGTTCAGACTTCA 1512
Query 1483 GCACTATACATCCGT-TGCTGTTCCTTCACATAGGGAAATACAGCAGACACTTGTGGAAA 1541
||||| |||||| | | |||| ||||||||||||||||||||||||||||| |||||||
Sbjct 1513 ACACTACACATCCATAT-CTGTACCTTCACATAGGGAAATACAGCAGACACTCGTGGAAA 1571
Query 1542 TAGGTGACAAGGATCCTTCGTTTATAGGATCTCGCGAGTGGATTGGTGCCATAGAGTTGA 1601
||||||||||||||||||||||| ||||||| || || |||||||||||||||||||| |
Sbjct 1572 TAGGTGACAAGGATCCTTCGTTTGTAGGATCGCGTGAATGGATTGGTGCCATAGAGTTAA 1631
Query 1602 GTTTTGTGCTGGATAAACTTCTTGGTGTAAGTTGCAAAATCATGAACTTCAGATCAGGAT 1661
| |||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 1632 GCTTTGTGTTGGATAAACTTCTTGGTGTAAGTTGCAAAATTATGAACTTCAGATCCGGAT 1691
Query 1662 CGGAGCTCCCAGAGAAATGCCGTGAGTTAGCTATGCACTTTGAGAACCAAGGAACTCCAA 1721
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1692 CAGAGCTCCCAGAGAAATGCCGGGAGTTAGCTATGCACTTTGAGAACCAAGGAACTCCAA 1751
Query 1722 TAATGATTGGA 1732
|||||||||||
Sbjct 1752 TAATGATTGGA 1762
Score = 324 bits (175), Expect = 2e-87
Identities = 253/287 (88%), Gaps = 19/287 (7%)
Strand=Plus/Plus
Query 1790 TGCGCGTTCCTGATCCTGGACCCGCATTATACAGGAAGTGAAGATCACAAGAAGATCGTC 1849
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1844 TGCGCGTTCCTGATCCTGGATCCGCATTATACAGGAAGTGAAGATCACAAGAAGATCGTC 1903
Query 1850 AATGGTGGATGGTGTGGGTGGAAAAAAGCTGTTGATAGCAAAGGGAAGAGTTTTTTCTTG 1909
|||||||| ||||||||||||||||||||||||||||||||||| || || |||||||||
Sbjct 1904 AATGGTGGTTGGTGTGGGTGGAAAAAAGCTGTTGATAGCAAAGGAAAAAGCTTTTTCTTG 1963
Query 1910 CACAACAAGTTTTACAATCTTCTTCTTCCTCAGCGTCCCAACATGGTTTAATTATCATT- 1968
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1964 CACAACAAGTTTTACAATCTTCTTCTTCCTCAACGTCCCAACATGGTTTAATTATCATTT 2023
Query 1969 -CA-ACAAT-TA-CTTC--tt--tttttGGTCTTACCACAGTTTTA-C-T-CT--GGTCT 2015
| ||| | || | | || ||||| ||||| |||||||||| | | || |||||
Sbjct 2024 TCCTACA-TGTAACAACAATTACTTTTTT-TCTTATCACAGTTTTAGCCTGCTCTGGTCT 2081
Query 2016 CCCCTGATAGTGCAAAAA-TGGAGTTTGAAAGAAATTTTAATTCCAG 2061
|| |||||||||||||| |||||||| ||||||||| |||| |||
Sbjct 2082 CC--TGATAGTGCAAAAAATGGAGTTTTCAAGAAATTTGAATTTCAG 2126
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102158109075
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5