BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485200
Length=1280
Score E
Sequences producing significant alignments: (Bits) Value
AT3G48410.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 2021 0.0
> AT3G48410.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr3:17925702-17928188 REVERSE LENGTH=1330
Length=1330
Score = 2021 bits (1094), Expect = 0.0
Identities = 1221/1283 (95%), Gaps = 6/1283 (0%)
Strand=Plus/Plus
Query 1 AGCTCTCaaaaaaaGATATTGCCACTGCCTCACCAAATTTTCCTCCGgaaagagagtgag 60
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1 AGCTCTCAAACAAAGATATTGCTACTGCCTCACCAAATTTTCCTCCGGAAAGAGAGTGAG 60
Query 61 aaaattttccaagagaaaga-gagagagaatggctggagaaaaaacagagagggggaaga 119
|||| ||||||||||||||| |||||||||||||||||||| ||| |||||||| |||||
Sbjct 61 AAAA-TTTCCAAGAGAAAGAGGAGAGAGAATGGCTGGAGAAGAAATAGAGAGGGAGAAGA 119
Query 120 aaTCTGCAGCATCTGCAAGAACTCACACCAGAAACAACACTCAACAAAGTTCTTCTTCTG 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 AATCTGCAGCATCTGCAAGAACTCACACCAGAAACAACACTCAACAAAGTTCTTCTTCTG 179
Query 180 GTTATCTGAAAACGATTCTTCTGGTAACGTTCGTTGGAGCTTTAGCATGGATTTATCAAA 239
|||||||||||||| |||| |||||||||||||| |||| |||||||||| |||||||||
Sbjct 180 GTTATCTGAAAACGCTTCTCCTGGTAACGTTCGTCGGAGTTTTAGCATGGGTTTATCAAA 239
Query 240 CAATCCAACCACCACCGGCCAAACCCGTCGGCTCTCCCGGCGGAGCCACCGTGACATCAC 299
|||||||||||||||| |||||| ||||||||||||||| ||| |||||||||||||||
Sbjct 240 CAATCCAACCACCACCCGCCAAAATCGTCGGCTCTCCCGGTGGACCCACCGTGACATCAC 299
Query 300 CGAGGATCAAATTGAGAGACGGAAGACATCTGGCTTACATAGAATTCGGAATCCCTAGAG 359
||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 300 CGAGGATCAAACTGAGAGACGGAAGACATCTGGCTTACACAGAATTCGGAATCCCTAGAG 359
Query 360 ACGAAGCCAAGTTCAAGATCATATACATCCACGGCTTCGATTCTTGTATGCGAGACTCGC 419
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 360 ACGAAGCCAAGTTCAAGATCATAAACATCCACGGCTTCGATTCTTGTATGCGAGACTCGC 419
Query 420 ACTTCGCCAGTTTCTTATCGCCGGCTCTTGTGGAGGAATTGAGGATACACATTGTGTCTT 479
| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 420 ATTTCGCCAATTTCTTATCGCCGGCTCTTGTGGAGGAATTGAGGATATACATTGTGTCTT 479
Query 480 TTGACCGTCCTGGTTATGGAGAGAGTGATCCTAACCTGAATGGGTCACCAAGAAGCATAG 539
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TTGATCGTCCTGGTTATGGAGAGAGTGATCCTAACCTGAATGGGTCACCAAGAAGCATAG 539
Query 540 CATTGGATATAGAAGAGCTTGCTGATGGGTTAGGACTAGGACCTAAGTTCTATCTCTTTG 599
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 540 CATTGGATATAGAAGAGCTTGCTGATGGGTTAGGACTAGGACCTCAGTTCTATCTCTTTG 599
Query 600 GTCT-TTCCATGGGTGGTGAAATTACATGGGCGTGTCTTAACTACATTCCTCACAGGATA 658
|| | |||||||||||||||||||||||||| || ||||||||||||||||||||| ||
Sbjct 600 GT-TACTCCATGGGTGGTGAAATTACATGGGCATGCCTTAACTACATTCCTCACAGGTTA 658
Query 659 GCAGGAGCTGCGCTTGTTGCTCCGGCGATTAACTACTGGTGGAGAAACTTACCGGGAGAC 718
||||||||||| ||||| ||||| ||||||||||| |||||||||||||||||||||||
Sbjct 659 GCAGGAGCTGCCCTTGTAGCTCCAGCGATTAACTATTGGTGGAGAAACTTACCGGGAGAT 718
Query 719 ATAACAAGAGAAGCTTTCTCTCTTATGCATCCTGCAGATCAATGGTCACTTCGAGTAGCT 778
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 TTAACAAGAGAAGCTTTCTCTCTTATGCATCCTGCAGATCAATGGTCACTTCGAGTAGCT 778
Query 779 CATTATGCTCCTTGGCTTACATATTGGTGGAACACTCAGAAATGGTTCCCGGTCTCCAAT 838
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 779 CATTATGCTCCTTGGCTTACATATTGGTGGAACACTCAGAAATGGTTCCCAATCTCCAAT 838
Query 839 GTGATTGCGGGTAATCCCATTATTTTCTCCCGGCAGGACATGGAGATTTTGTCTAAGCTC 898
|||||||| |||||||||||||||||||| || |||||||||||||| ||||| ||||||
Sbjct 839 GTGATTGCCGGTAATCCCATTATTTTCTCACGTCAGGACATGGAGATCTTGTCGAAGCTC 898
Query 899 GGATTCGTCAATCCAAATCGGGCATACATAAGACAACAAGGTGAATACGTAAGCCTACAC 958
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 899 GGATTCGTCAATCCAAATCGGGCATACATAAGACAACAAGGTGAATATGTAAGCTTACAC 958
Query 959 CGAGATTTGAATGTCGGATTTTCAAGCTGGGAATTTGATCCGATAGACCTTCAAGATCCA 1018
|||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 959 CGAGATTTGAATGTCGCATTTTCAAGCTGGGAGTTTGATCCGTTAGACCTTCAAGATCCG 1018
Query 1019 TTCCCGAACAACAATTGCTCGGTTCACCTATGGAACGGCGATGAGGATAAGTTTGTGCCA 1078
||||||||||||||| |||| |||||| ||||||| ||||||||||||||||||||||||
Sbjct 1019 TTCCCGAACAACAATGGCTCAGTTCACGTATGGAATGGCGATGAGGATAAGTTTGTGCCA 1078
Query 1079 GTAAAGCTTCAACGTTATATCGCGTCAAAGCTGCCATGGATTCGTTACCATGAAATATCT 1138
|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 GTAAAGCTTCAACGGTATGTCGCGTCAAAGCTGCCATGGATTCGTTACCATGAAATATCT 1138
Query 1139 GGATCAGGACATTT-GTTACCATTTGTGGAAGGTATGACTGATAAGATCATCAAGTCACT 1197
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 GGATCAGGACATTTTGT-ACCATTTGTGGAAGGTATGACTGATAAGATCATCAAGTCACT 1197
Query 1198 TTTGGTTGGGGAAGAAAATGTAAGTGAGAGTAGAGAAGCCTCTGTTTAAGTTAATGTGGT 1257
|||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1198 TTTGGTTGGGGAAGAAGATGTAAGTGAGAGTAGAGAAGCCTCTGTTTAAGTCAATGTGGT 1257
Query 1258 TTTTAAGGATAATTAGTTGCTTG 1280
||||||| ||||||| |||||||
Sbjct 1258 TTTTAAGAATAATTAATTGCTTG 1280
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62951483430
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5