BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485205
Length=563
Score E
Sequences producing significant alignments: (Bits) Value
AT3G48450.1 | Symbols: | RPM1-interacting protein 4 (RIN4) fam... 756 0.0
> AT3G48450.1 | Symbols: | RPM1-interacting protein 4 (RIN4) family
protein | chr3:17944029-17944888 REVERSE LENGTH=573
Length=573
Score = 756 bits (409), Expect = 0.0
Identities = 526/578 (91%), Gaps = 26/578 (4%)
Strand=Plus/Plus
Query 1 CTCTCCTTTTCCCAGATCATCATCAAGCTCTCTATTTCTCTAGATTTTGGACATTTCCTC 60
||||| ||||||||||||||||||| |||||| ||||||||||||||||| ||||||||
Sbjct 4 CTCTCTTTTTCCCAGATCATCATCATCCTCTCTCTTTCTCTAGATTTTGGATATTTCCTC 63
Query 61 GTATCGTATTCGAAATCCTTTG-TTCTAATTCCAACAATGGCAACGGGAAATAGAGCGAG 119
|||||| |||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 64 GTATCGGATTCGAAATCCTCTGTTTCTAATTCCAACAATGGCAACGGGAAATAGAGCGAG 123
Query 120 ACCATTGCCAAAATTTGGGGAATGGGATGCGACTAATCCTGCCTCGGCTGAAGGATTCAC 179
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 124 ACCATTGCCAAAATTTGGGGAATGGGATGCGACTAATCCTGGCTCGGCTGAAGGATTCAC 183
Query 180 TGTCATTTTCAATAAAGCTCGTGATGACAAGAAGACCAAGAAAACCGCTGTCGCAGGACC 239
||||||||||||||||||||| |||||||||||||| | |||||||||||||||||||||
Sbjct 184 TGTCATTTTCAATAAAGCTCGCGATGACAAGAAGACGATGAAAACCGCTGTCGCAGGACC 243
Query 240 TGAGAGTATTGTTTCACCTCCAAGAAATGAAGAACCTCC-AAAGAACAACAACAACCATC 298
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 244 TGAGAGTATTGTTTCACCTCCAAGAAATGAAGAACCTCCTAAA-AACAACAACAACCATC 302
Query 299 A-CA-A-CCGT-A-A----T--T-CCCAAACCCCACGATCAAAGAAGAAATGGCTTTGTT 346
| || | || | | | | | ||||||||||| ||||||||||||||||||||||||
Sbjct 303 ATCACAACCATCACACCCGTCATTCCCAAACCCCAAGATCAAAGAAGAAATGGCTTTGTT 362
Query 347 TTCGTTAACTCTGGTAGTGGCTCTGTTCTGAAAAAACCA-ACGATAAGCAAGCAGAATCG 405
|||||||||||||||| |||||||||||||| |||||| |||| |||||||||||||||
Sbjct 363 TTCGTTAACTCTGGTATTGGCTCTGTTCTGAGAAAACCCGACGACAAGCAAGCAGAATCG 422
Query 406 CGTAGCCGAGTAATCTCCAACAGATTATAGCGACCAAACCTGTGATCGTCTAAGATGTTG 465
| ||| ||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 423 TGGAGC-GAGTAATCTCCAACAGATTATAGCGACCAAACCAGTGATCATCTAAGATGTTG 481
Query 466 TTGCAAACTTGtcttcttcttcttcttcttGCTAGTTGAGTTTCTCTTTTCCTCTTTGTT 525
|||||||||| || ||||||||| || ||| ||||||||||| || || | ||||||
Sbjct 482 TTGCAAACTT--CT-CTTCTTCTTATT---GCTCGTTGAGTTTCT-TTCTC-T-TTTGTT 532
Query 526 TTGGCCACATTTGGGTATATGAATATACGTTATTCTTG 563
|||| |||||||||||||||||||||||||| ||||||
Sbjct 533 TTGGACACATTTGGGTATATGAATATACGTTTTTCTTG 570
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27025971086
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5