BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485207
Length=3175
Score E
Sequences producing significant alignments: (Bits) Value
AT3G48470.1 | Symbols: EMB2423 | embryo defective 2423 | chr3:1... 3105 0.0
> AT3G48470.1 | Symbols: EMB2423 | embryo defective 2423 | chr3:17951689-17956812
FORWARD LENGTH=3142
Length=3142
Score = 3105 bits (1681), Expect = 0.0
Identities = 1895/1995 (95%), Gaps = 27/1995 (1%)
Strand=Plus/Plus
Query 1190 TTCTTGAGTGCCCACCGGTTACTAATACACTTGCTAAAGGTGATGTCACACAAGGACTGC 1249
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1166 TTCTTGAGTGCCCACCGGTTACTAATACACTTGCTAAAGGTGATGTCACACAAGGACTTC 1225
Query 1250 TTGAAACAACGCAGCGACTAGCCTCAGTTTGGTCAAAACGGGAGTTTCTGCAGTCCGTCC 1309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1226 TTGAAACAACGCAGCGACTAGCCTCAGTTTGGTCAAAACGGGAGTTTCTGCAGTCCGTCC 1285
Query 1310 CATTGGAGCAGCAAGCTTACTTTCAGTTCCTGTTTCCCATAACAGATAT-TGCAGATATA 1368
||||||||||||||||||| ||||||||||||||||| |||||||||| | ||||||||
Sbjct 1286 AATTGGAGCAGCAAGCTTACCTTCAGTTCCTGTTTCCCGTAACAGATATAT-CAGATATA 1344
Query 1369 ACTGCAGCTCTTGGGCTTTGCCTGGAGAACATGTCAAAG-GAAGAACTAGATAGAACGAA 1427
||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||
Sbjct 1345 ACTGCAGCTCTTGGGCTTTGCCTGGAGAACATGTC-AAGAGAAGAACTAGATAGAACAAA 1403
Query 1428 GGATGTAATGCACAGTATTCTTCAAGGAGTTAGCTGTAGACTGGAGAACCCAGGAGATCT 1487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1404 GGATGTAATGCACAGTATTCTTCAAGGAGTTAGCTGTAGACTGGAGAACCCAGGAGATCT 1463
Query 1488 GGTACGAAAAATGGCTAGCTCTATTGCGTTCATGTTCTCTAAAGTAATTGACCCGAAGAA 1547
|||||| ||||||||||||||||| || || |||||||||||||||||||||||||||||
Sbjct 1464 GGTACGGAAAATGGCTAGCTCTATCGCCTTTATGTTCTCTAAAGTAATTGACCCGAAGAA 1523
Query 1548 TCCTCTGTACCTCGATGATTCATTCACTGGGAATGCAATTGACTGGGAATTTGGATTGCA 1607
|||||||||||| ||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 1524 TCCTCTGTACCTTGATGATTCAATCACTGATAATGCAATTGACTGGGAATTTGGATTGCA 1583
Query 1608 AATGGCTGTGGGAGGGGTCCGGTCAATCACAAATTCAATGGAAAATGAAGATGGTGAAAA 1667
|| | || | |||||||||||| |||||||||||| ||||||||||||
Sbjct 1584 AA---C---------GG--C-ATCAATCACAAATACAATGGAAAATGGAGATGGTGAAAA 1628
Query 1668 CAAAACATCAGCCGCCTTAACTGAAGTAAATGACTCTAGCCGCAGTAACAAG-Gaaa--a 1724
||||| ||||||| ||||||||||||||||||| ||||| ||||| |||||| ||| |
Sbjct 1629 CAAAAGATCAGCCTCCTTAACTGAAGTAAATGAGTCTAGTCGCAGAAACAAGCAAAAGGA 1688
Query 1725 aaaTCGCAAGAGCAAGAACATATCTGATTTTGTATTGGCTGATCCCGATGAAATAGTTGA 1784
|||||||||||| ||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct 1689 AAATCGCAAGAGTAAGAACATATCTGCTTTTGTATTGGCTGATCCCAATGAAATAGTTGA 1748
Query 1785 TTTGGCTACCTTAAACTGTGAAACAGAGAGTGATAAAGATGATGTTGATGATAACGCAAG 1844
||||||||| ||||||||||| || ||||||||||||||||||| |||||| |||||||
Sbjct 1749 TTTGGCTACGTTAAACTGTGATACGGAGAGTGATAAAGATGATGGCGATGATGACGCAAG 1808
Query 1845 TGTCAGCTCTGATAATTCAAGTGTCACTTCTTTGGAGCCATATGATCTAATGGATGATGA 1904
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1809 TGTCAGCTCTGATAATTCAAGTGTCACTTCTTTGGAGCCATATGATCTTATGGATGATGA 1868
Query 1905 CAAGGATTTAGGGAAACAATTTACACATTTGGTGGATGTTGTTGGAGCTCTTCGGAAAAC 1964
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1869 TAAGGATTTAGGGAAACAATTTACACATTTGGTGGATGTTGTTGGAGCTCTTAGGAAAAC 1928
Query 1965 CGATGATGCTGATGGGGTGGAGAAAGCAATATATGTTGCAGAGAAACTTGTGCGAGCATC 2024
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1929 CGATGATGCTGATGGGGTGGAGAAAGCTATATATGTTGCAGAGAAACTTGTGCGAGCATC 1988
Query 2025 ACCTGATGAATTGACTCACATAGCTGGTGACCTTGCTCGAACTCTGGTACAGGTTCGCTG 2084
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1989 ACCTGATGAATTGACTCATATAGCTGGTGACCTTGCTCGAACTCTGGTACAGGTTCGCTG 2048
Query 2085 CTCTGATATAACAATTGAAGGTGAAGAAGATTCAGCAGAAGAGAAGCGGCAAAGAGCTCT 2144
|||||||||| |||| |||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 2049 CTCTGATATAGCAATCGAAGGTGAAGAAGATTCAGCTGAAGAAAAGCGGCAAAGAGCTCT 2108
Query 2145 AATTGCGTTGCTTGTGACCCGTCCATTTGAATCCCTTGAAACTCTAAACAATATTTTGTA 2204
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2109 AATTGCGTTGCTCGTGACCCGTCCATTTGAATCCCTTGAAACTCTAAACAATATTTTGTA 2168
Query 2205 TTCGCCTAATGTAGATGTAAGTCAGCGCATAATGATACTTGATGTCATGTCTGAAGCAGC 2264
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2169 TTCGCCTAATGTAGATGTAAGTCAGCGCATAATGATACTTGATGTCATGGCTGAAGCAGC 2228
Query 2265 TCGGGAGCTTGCTAATTCCAAGACCCTAAAACCTAAACATGAAGCACGGGGACCTCTGAT 2324
| ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 2229 TAGGGAGCTTGCTAATTCCAAGACCCTGAAACCTAAACACGAAGCACGGGGACCTCTGAT 2288
Query 2325 ATCAAATATCTCAGATCCTCAACCCTGGTATTTGCCTAGCAATGCGAGTACTCCATGGAA 2384
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2289 ATCAAATATATCAGATCCTCAACCCTGGTATTTGCCTAGCAATGCGAGTACCCCATGGAA 2348
Query 2385 AAAGGTCCCCGAGACGGGATCTTTTCATCTGAACTGGGCAAATCGATTTGAGAGAGAGCT 2444
|||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2349 AAAGGTGTCTGAGACAGGATCTTTTCATCTGAACTGGGCAAATCGATTTGAGAGAGAGCT 2408
Query 2445 ACAGTCAAAGCCTGGACAGACGAAGAAAGGAAAATCTCGAAGGTGGAGCCTCAAATCAGC 2504
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2409 ACAGTCAAAGCCTGGACAGACAAAGAAAGGAAAATCTCGAAGGTGGAGCCTCAAATCAGC 2468
Query 2505 AGACAGAGATCAAAACAGTACTGACTGGTCTCAGAATAAATTTCCACTATATGCAGCAGC 2564
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2469 AGACAGAGATCAAAACAGTACTGACTGGTCTCAGAATAGATTTCCACTATATGCAGCAGC 2528
Query 2565 ATTTATGCTTCCAGCCATGAAAGAGTTTGACAAGAAACGACATGGTGTTGACTTACTTGG 2624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2529 ATTTATGCTTCCAGCCATGAAAGAGTTTGACAAGAAACGACATGGTGTTGACTTACTTGG 2588
Query 2625 CAGGGACTTTGTTGTCCTTGGGAAACTTGTTCACATGCTCGGCGTCTGTATGCAGTGTGC 2684
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2589 CAGGGACTTTGTTGTCCTTGGGAAACTTGTTCACATGCTCGGCGTCTGTATGCAATGTGC 2648
Query 2685 ATCGATGCATCCAGAAGCATCTGCGTTAGCTATCTCTCTTCTAGATATGTTACAACGAAG 2744
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2649 ATCAATGCATCCAGAAGCATCTGCATTAGCTATCTCTCTTCTAGATATGTTACAACGAAG 2708
Query 2745 GGAAGTATGCAATCACCCCGAAGCCTATGTCCGAAGAGCGGTCCTTTTTGCAGCCTCTTC 2804
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 2709 GGAAGTATGCAATCACCCAGAGGCCTATGTCCGAAGAGCGGTCCTTTTTGCAGCCTCTTC 2768
Query 2805 TGTTTTGGTCGCTCTTCACCCGTCTTACATAGTCTCAACCTTGGTTGAAGGAAATCTTGA 2864
||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2769 TGTTTTGGTTTCTCTTCACCCGTCTTACATAGTGTCAACCTTGGTTGAAGGAAATCTTGA 2828
Query 2865 TCTTTCCAGAGCTCTTGAATGGATCAGAACGTGGGCTCTTCAAATAGCTGACTCAGACAT 2924
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2829 TCTTTCCAGAGCTCTTGAATGGATCAGAACGTGGGCTCTTCAAATAGCTGACTCAGACAT 2888
Query 2925 CGACCGAGACTGTTACACTATGGCTTTGTCATGTCTCCAACTCCATGCCGAGATGGCTCT 2984
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2889 CGACCGAGACTGTTACACGATGGCTTTGTCATGTCTCCAACTCCATGCCGAGATGGCTCT 2948
Query 2985 TCAAACTTCCCGAGCTTTAGAATCAAGC-GGTGGAAGTAGCAGCAGCAGCA-C-TG-GAC 3040
|||||||||||||||||||||||||| | |||||||||||||||||||| | | | |||
Sbjct 2949 TCAAACTTCCCGAGCTTTAGAATCAA-CTGGTGGAAGTAGCAGCAGCAGTAGCATTAGAC 3007
Query 3041 CGATGAACATAAGTCTACCTTCTGGTATCTCTAAGCTGACATCAATCAAACTTCCTTCTT 3100
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 3008 CGATGAACATAAGTCTACCTTCGGGTATCTCTAAACTGACATCAATCAAACTTCCTTCTT 3067
Query 3101 CAAATGTTCATCTCTAGAAACTTCGTTCCCATTAATTCGGCTCTAGTCACCTCTGTAGAG 3160
||||||||||||||||||||| | ||||||||||||||| ||||||||| |||||| ||
Sbjct 3068 CAAATGTTCATCTCTAGAAACGCCATTCCCATTAATTCGGGTCTAGTCACTTCTGTATAG 3127
Query 3161 TAACATTTCTTCACT 3175
|| ||||||||||||
Sbjct 3128 TAGCATTTCTTCACT 3142
Score = 706 bits (382), Expect = 0.0
Identities = 422/442 (95%), Gaps = 0/442 (0%)
Strand=Plus/Plus
Query 688 GCTTCCAGCACTGAGGCCAATAGCACAGTTATCGTTTTATCATTTGTCGGGGAAATTTTT 747
|||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 709 GCTTCCTGCACTGAGGCCAATTGCACAGTTATCGTTTTATCATTTGTCGGGGAAGTTTTT 768
Query 748 TCCCGCATCTGTCGACGCGGATTATCAGATTTGCTGTTAAGTGAAGTAATACCTCATGTC 807
||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 769 TCCCGCATCTGTCGACGTGGATTATCAGATTTGCTGTTAAGTGAAGTAACACCTCATGTC 828
Query 808 CTAGCTCATGTTAGGAGGTTACTAAACTCAAAGATGGGTTCCACTGAGATGGAAACATTT 867
|||||||| |||||||||||||||||||||||||| ||| | | |||| |||| ||||||
Sbjct 829 CTAGCTCAAGTTAGGAGGTTACTAAACTCAAAGATAGGTGCTATTGAGGTGGATACATTT 888
Query 868 CAGTTGGACCCTACATCCCAGATTTGGTCGAAATCTATGGAAGCAGTGACAGATCCGTAT 927
||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 889 CAGTTGGACCCTACAACCCGGATTTGGTCGAAAACTATGGAAGCAGTGACAGATCCGTAT 948
Query 928 GCTGTTGAGAAAATGGCTGAACAACTTTTACATCAGCTATATGCTGAGCATGCAAGTGAT 987
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 949 GCTGTTGAGAAAATGGCTGAACAACTTTTACATCAGCTATATGCTGAGCATCCAAGTGAT 1008
Query 988 GTTGAAGCTTTCTGGACTATTTGGTCTTTGTTTCATCGCAATGTAATACATCAGGCATCA 1047
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1009 GTTGAAGCTTTCTGGACTATTTGGACTTTGTTTCATCGCAATGTAATACATCAGGCATCA 1068
Query 1048 GTGAGGCAAGCAAAATGTTTTCTATGGCAGCTTGATTCTTTGTTTAGATACCCCTTTTTC 1107
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1069 GTGAGGCAAGCAAAATGTTTTCTATGGCAGCTTGATTCTTTCTTTAGATACCCCTTTTTC 1128
Query 1108 TTCGATCATTTCCATCCTAATG 1129
||| |||||||||||||||||
Sbjct 1129 TTCTTTCATTTCCATCCTAATG 1150
Score = 630 bits (341), Expect = 2e-179
Identities = 381/400 (95%), Gaps = 4/400 (1%)
Strand=Plus/Plus
Query 289 AGAAATGATTGGTTGGAGACGTTCTA-CAGAGGTGTTGCGTTCCCAACGTTTGCTCGGGT 347
|||||||| ||||||||||||||||| | ||||||||||||| |||||||||||||| ||
Sbjct 229 AGAAATGAATGGTTGGAGACGTTCTATC-GAGGTGTTGCGTTTCCAACGTTTGCTCGAGT 287
Query 348 TTTGTTGCTTGATGTTGCTTCGGATTGGCTGTCTTGTTTCCCTATTTCAGTGCAGAAACA 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 288 TTTGTTGCTTGATGTTGCTTCGGATTGGCTGTCTTGTTTCCCTATTTCAGTGCAGAAACA 347
Query 408 TTTGTATGATAAGTTCTTCGTAGATGGATCTGTTATTGAGGTTGTTCAAGTTTTGGTTCC 467
||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 348 TTTGTATGATAAGTTCTTCTTAGATGGATCTGTTATTGAGGTTGTTCAAGTCTTGGTTCC 407
Query 468 ATTTCTACATCATGTGGGAGATGGTGGCGTTGATCCTAATTCTGTCCAGACTAATGTGGA 527
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 408 ATTTCTACATCATGTGGGAGATGGTGGCGTTAATGCTAATTCTGTCCAGACTAATGTGGA 467
Query 528 AAGATTGCTTATATTGTGTTTGCTTGAAAATGCTGGAGTGCTCAAGATAACTAAAGAAAT 587
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 468 AAGATTGCTTATATTGTGTTTGCTTGAAAATGATGGAGTGCTCAAGATAACTAAAGAAAT 527
Query 588 TGGTGATAGTTATCAAGGAGATAATTTTAAG-AACGGAAGTCTTAAGCCTTTATTATCCA 646
|||| ||| |||||||||| |||||| || | || |||||||| ||||||||||||||||
Sbjct 528 TGGTAATATTTATCAAGGACATAATTCTA-GCAATGGAAGTCTCAAGCCTTTATTATCCA 586
Query 647 GGCTATCACAGATATTGACCTCCATTCCTGATAAAGCACG 686
||||||||||||| ||||||||||||||||||||||||||
Sbjct 587 GGCTATCACAGATCTTGACCTCCATTCCTGATAAAGCACG 626
Score = 300 bits (162), Expect = 6e-80
Identities = 188/201 (94%), Gaps = 0/201 (0%)
Strand=Plus/Plus
Query 1 ATGGCGGAAGCGACTGAGCAAGAGAGAGCACTTGAAAACAATTTGCTCAACAAGGTCGCA 60
|||||||||| |||| ||||||||||| | |||||||||||||||||| ||||||||| |
Sbjct 1 ATGGCGGAAGGGACTAAGCAAGAGAGAACGCTTGAAAACAATTTGCTCCACAAGGTCGGA 60
Query 61 GAAGCCATCTCTGCTATTTCTGATGCAAGGCACGTAGACCAAGTGATCTCTGCTATTCAT 120
|||||| ||||||||||||||||||||| ||| || |||||||||||||| |||||||||
Sbjct 61 GAAGCCGTCTCTGCTATTTCTGATGCAAAGCATGTCGACCAAGTGATCTCCGCTATTCAT 120
Query 121 TCCGTCGCCGTTCTTCTCTTCCCGGTCGATCCATCGTTGTTTTCCGGGAGTATTGGTGAC 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 121 TCCGTCGCCGTTCTTCTCTTCCCGGTCGATCCATCGTTGTTTTCCGGGAGTATTGGGGAC 180
Query 181 AAGTACAGAGAAAGGGTTTGT 201
||||||||||||||||| |||
Sbjct 181 AAGTACAGAGAAAGGGTCTGT 201
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 157925536564
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5