BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485209
Length=1130
Score E
Sequences producing significant alignments: (Bits) Value
AT3G48510.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1541 0.0
> AT3G48510.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G63350.1);
Has 98 Blast hits to 98 proteins in 11 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:17967354-17968538
REVERSE LENGTH=1185
Length=1185
Score = 1541 bits (834), Expect = 0.0
Identities = 943/995 (95%), Gaps = 9/995 (1%)
Strand=Plus/Plus
Query 1 CTCAGCCCAAGTAAAGCTTTTTAGCTAATTCTCAAACATTCTATACACAAAAATCTCAAG 60
|||||| |||||||||| ||||| |||||||||||||||||| ||||||||||| |||||
Sbjct 5 CTCAGCTCAAGTAAAGC-TTTTACCTAATTCTCAAACATTCTTTACACAAAAATATCAAG 63
Query 61 AGTG--ATAGATTGAGAG-AAAAATGGACGGTAGGGGAGGGTGTTGCATAGCTAGGTACG 117
|||| |||||| | ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 64 AGTGATATAGATAGCGAGAAAAAATGGACGGTAGGGGAGGGTGTTGCATAGCTAGGTACG 123
Query 118 CCATTGGCTCTGGACCGTACGATCTTTCCAAAGCAGATCGTATCATGCTTCGATTTCGTC 177
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 124 CCATTGGCTCTGGACCGTACGATCTTTCCAAAGCAGATCGCATCATGCTTCGATTTCGTC 183
Query 178 CCATCGCTCCTAAACCGGCCAGCCCCGGCGGAGTAAATCCCGTATCCAGCGGAGATAGCG 237
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 184 CCATTGCTCCTAAACCGGCCAGCCCCGGCGGAGTAAATCCCGTATCCAGCGGAGATAGCG 243
Query 238 GCGGCGGAAGCTCCGACGTTTCCTTTAGATCAGCTGGTAGAAGAAAGAGGAAATGTCATC 297
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 244 GCGGCGGAAGCTCCGACGTTTCCTTTAGATCAGCTAGTAGAAGAAAGAGGAAATGTCATC 303
Query 298 AGCAGAAGGAGAATGGTGGTAACGCCAAGAGGTGCACAAGGCGGAGGACATCGGATAAAC 357
||| ||||||||||||||||||||||||||||||||| |||||| ||| ||||||||||
Sbjct 304 AGCTGAAGGAGAATGGTGGTAACGCCAAGAGGTGCACCCGGCGGAAGACGTCGGATAAAC 363
Query 358 CCGTCGTTCACGGCGGCGCTAATGCGGTGACTCTTTCTCTGTTACCGGAGAAACCTATAG 417
|||||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 364 CCGTCGTTCACGGCAGTGCTAATGCGGTGACTCTTTCTCTATTACCGGAGAAACCTATAG 423
Query 418 ATCTGAAGGCGGCGGTGGAGAAGCAGAAGCGGCAGGGTCCGTTATGGTTGAGTTTCAGCG 477
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 424 ATCTTAAGGCGGCGGTGGAGAAGCAGAAGCGGCAGGGTCCGTTATGGTTGAGTTTCAAAG 483
Query 478 ACGGCGGAGGGATGCTCACGCCGGCTTATCAGAAACCGGAGGTTGTGCGGAGGACGGTGG 537
||||||||||||||||||| ||||||||||||| ||||||| |||||| |||||||||||
Sbjct 484 ACGGCGGAGGGATGCTCACACCGGCTTATCAGACACCGGAGATTGTGCAGAGGACGGTGG 543
Query 538 TGATTTCGTCGTGTATGACGGTGGAGCGTGTAACGGACGCTTGGATTGACGGTTACGGTT 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 544 TGATTTCGTCGTGTATGACGGTGGAGCGTGTAACGGACGCTTGGATTGACGGTTACGGTT 603
Query 598 TGGGGAGGTCCGATGAAGAAAGGAAGATGAATCTTGTGAGAGACACGTGTCCTGGTTTCA 657
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 604 TAGGGAGGTCAGATGAAGAAAGGAAGATGAATCTTGTGAGAGACACGTGTCCTGGTTTCA 663
Query 658 TATCCGACGGTTCAGGGAGAGTCACGTGGACTAATGACGCGTATCGGAAGATGGCGAGGG 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 664 TATCCGACGGTTCAGGGAGAGTCACGTGGACTAATGACGCGTATCGGAAGATGGCTAGGG 723
Query 718 AGAATATTCCCGTGGAAGAAGGTACACCGGAGATAA-TAAGCGGCGATAGTTTTCACGTG 776
| | ||||||||||||||||||| |||||||||||| || ||||||||||||||||||||
Sbjct 724 ATATTATTCCCGTGGAAGAAGGTGCACCGGAGATAACTA-GCGGCGATAGTTTTCACGTG 782
Query 777 TTCGTACGGTTGGTGATGAGGGAGAGGCCGATGCTATCGTCCCCTGGATTCACATGCCGA 836
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 783 ATCGTACGGTTGGTGATGAGGGAGAGGCCGATGCTAACGTCCCCTGGATTCACATGCAGA 842
Query 837 GTAAAACTACAGTACACGTGTCAGAATCGTGAGAGAGGCTCCGTCACGGTGCCTTGCGAC 896
| ||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 843 ATGAAACTCCAGTACACGTGTCAAAATCGTGAGAGAGGCTCAGTCACGGTGCCTTGCGAC 902
Query 897 GTGTGGAGAATGGACG--G-TGGTGGTTTCGCTTGGAGGCTCGACGTTAAGGCCGCTTTG 953
|||||||||||||||| | ||||||||| ||||||||||||||||||||||||||||||
Sbjct 903 GTGTGGAGAATGGACGTCGGTGGTGGTTTTGCTTGGAGGCTCGACGTTAAGGCCGCTTTG 962
Query 954 TGTCTTTGACACTGTTTGATCAACTATAGTCACTA 988
|| ||||||||| ||| |||||||| |||||||||
Sbjct 963 TGCCTTTGACACCGTTAGATCAACTTTAGTCACTA 997
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55421401680
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5