BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485212
Length=699
Score E
Sequences producing significant alignments: (Bits) Value
AT3G48540.1 | Symbols: | Cytidine/deoxycytidylate deaminase fa... 1142 0.0
> AT3G48540.1 | Symbols: | Cytidine/deoxycytidylate deaminase
family protein | chr3:17989798-17992015 REVERSE LENGTH=699
Length=699
Score = 1142 bits (618), Expect = 0.0
Identities = 672/699 (96%), Gaps = 0/699 (0%)
Strand=Plus/Plus
Query 1 ATGAACTCTAGAGATCTTACACTCGTCTCTACTTCTGCAATTTTCGGTGCTTTGATTTCA 60
||||||||| |||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1 ATGAACTCTCGAGATCTTACACTCGTCTCTACATCTGCAATCTTCGGTGCTTTGATTTCA 60
Query 61 GCTCTAGCATTTCGCTTCTTCTCATCAAACCCTAAAAACCCCAAATCTCGAAGATTTACT 120
||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||
Sbjct 61 GCTCTAGCATTTCGCTTCTTCTCATCAAACCCTAAAAACCCCAAATCCCGAAAATTCACT 120
Query 121 TCCACCGAAATCACCGCAATTCCCAGAAAATTCCAGGATCTAGATCCTTTCAGTCCTTTG 180
|||||||||||| | |||||| |||||||||||| | ||||||||||||||||||||||
Sbjct 121 TCCACCGAAATCTCTGCAATTTCCAGAAAATTCCCTGCTCTAGATCCTTTCAGTCCTTTG 180
Query 181 AAACGAAATGGGTACTTATCATGGGATGATTATTTCATGGCGATTGCTTTCCTTTCTGCA 240
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 181 AAACGAAATGGGTACTTATCATGGGATGATTATTTCATGGCGATTGCATTCCTTTCTGCA 240
Query 241 GAACGATCCAAGGATCCTAACAGGCAGGTTGGTGCGTGTTTGGTGAGCCAAAATGGTGTC 300
|||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 241 GAACGATCCAAGGATCCTAACAGGCAGGTTGGCGCATGTTTGGTGAGCCAAAATGGTGTA 300
Query 301 ATTCTGGGGATTGGCTATAATGGTTTTCCAAGAGGCTGCTCTGATGACAAACTTCCTTGG 360
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ATCCTTGGGATTGGCTATAATGGTTTTCCAAGAGGCTGCTCTGATGACAAACTTCCTTGG 360
Query 361 GCCAAGAAATCAAGAACTGGGGACCCATTAGAGACCAAGTATCCATATGTTTGTCACGCT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GCCAAGAAATCAAGAACTGGGGACCCATTAGAGACCAAGTATCCATATGTTTGTCACGCT 420
Query 421 GAAGTCAATGCCATACTAAACACAAACCACGCTTCTGCAGCCGGCCAGAAGCTTTATGTG 480
|||||||||||||||||||||||||||||||| || || || ||||||||||||||||||
Sbjct 421 GAAGTCAATGCCATACTAAACACAAACCACGCATCGGCGGCTGGCCAGAAGCTTTATGTG 480
Query 481 ACAATGTTCCCTTGCAATGAATGTGCCAAGATTATTTTACAGTCTGGTGTTGCTGAGGTA 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 ACAATGTTCCCTTGCAATGAATGTGCCAAGATTATTTTACAGTCTGGTGTTGCTGAGGTA 540
Query 541 ATCTATTTTGTGGAAAAGAGACTAAATGACTCGGATGTTGCCTATGTAGCTTCTCACAAG 600
|||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 541 ATCTATTTTGTGGAAAAGAGACCAAATGACTCAGATGTTGCCTATGTAGCTTCTCACAAG 600
Query 601 CTCTTATCCATGGCCAACGTCAAAGTCAGGAAACACCAACCAGAGATGGATCAGATCTTG 660
|||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 601 CTCTTATCCATGGCAAACGTCAAAGTCAGGAAACATCAACCAGAGATGGATGAGATCTTG 660
Query 661 ATCAAGTTCGAAGAACACTTACTCCAACCAGAGACCTAA 699
|||||||||||||||||||||||||||||||||||||||
Sbjct 661 ATCAAGTTCGAAGAACACTTACTCCAACCAGAGACCTAA 699
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33857815078
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5