BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485213
Length=673
Score E
Sequences producing significant alignments: (Bits) Value
AT3G48550.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 965 0.0
> AT3G48550.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: C2H2-like zinc finger protein (TAIR:AT2G01940.3); Has
78 Blast hits to 78 proteins in 11 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 78; Viruses -
0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:17993999-17994734
FORWARD LENGTH=665
Length=665
Score = 965 bits (522), Expect = 0.0
Identities = 628/675 (93%), Gaps = 24/675 (4%)
Strand=Plus/Plus
Query 1 ATTGAGAAGTGCAGCCTTTTAGCCaaaaaaaacaaacaaaaaaacaaaaaTGGCTGAACA 60
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 1 ATTGAGAAGTGCAGCCTTTTAGCCAAAAAAAACAAACAAGAATACAAAAATGGCTGAACA 60
Query 61 ACAAGATCATCACAAAGAGCTTCAGCTTTTACCTTCTCCACCGTCTACGGAATCTCCGGT 120
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 61 ACAAGATCATCACAAAGAGCTTCAGCTTTTACCTTCTCCACCGTCTACCGAATCTCCGGT 120
Query 121 AAGGAAACACCGACCAACAGTTATAACAACAGACCATCAC--C-ACCACAACCGTTCCTC 177
|||||||||||||||||||||||||||||| ||||||||| | | ||| ||||||||||
Sbjct 121 AAGGAAACACCGACCAACAGTTATAACAACCGACCATCACAACAATCACCACCGTTCCTC 180
Query 178 TTCCATGATCCATCACGATCTTGACCTCAAACTCTCCATCAGCCTCAGCTCGATCTCAAC 237
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CTCCATGATCCACCACGATCTTGACCTCAAACTCTCCATCAGCCTCAGCTCGATCTCAAC 240
Query 238 CGCGGAGGAGCTTCCAAACGGTGGTGGAGGAGGTGTGGAGGCGCTGAAGTGGCAGGCGGC 297
|||||||||||||||||| ||| |||||||||||| |||||||||| || ||
Sbjct 241 AGCGGAGGAGCTTCCAAAC---GGT------GGTGTGGAGGCGTTGAAGTGGCAAGCCGC 291
Query 298 GGAGCAGATAAGGCTTGCGGCTATAGAGAAGGCTTACGCCGAGAGGGTTAGAGAATTGAC 357
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 292 GGAGCAGATAAGGCTTGCGGCTATAGAGAAGGCTTACGCCGAGAGGGTTAGAGAGTTGAC 351
Query 358 TCGCCGTGAGATGGAGATGGCTCAGTCTGAGTTTGCTCGTGCAAGGGTGATGTGGCAGAA 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 352 TCGCCGTGAGATGGAGATGGCTCAGTCTGAGTTTGCTCGTGCAAGGGTGATGTGGCAGAA 411
Query 418 GGCAAGGGAAGAAGTGGAGAGAGCTGAGAGGTTGAAGGAGAGATCAATGACGAAGATGGA 477
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 412 GGCAAGGGAAGAAGTGGAGAGAGCTGAGAGATTGAAGGAGAGATCAATGACGAAGATCGA 471
Query 478 TACGGCATGCTTGGAGATCACTTGCCACTCTTGCAGGCAAAGGTTTAGGCCATAATTTAA 537
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 472 TACGGCTTGCTTGGAGATCACTTGCCACTCTTGCAGACAAAGGTTTAGGCCATAACATAA 531
Query 538 GTATTTATTTGTTTCTCTTAATTATTGTTATTATATATGGAAATTTGAAGAAAAAGAGAA 597
||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||
Sbjct 532 GTATTTATTTGTTTCTCTTAATTATTGTTATTATAAATGGATATTTGAAGAGAAAGAGAA 591
Query 598 TGTTGGTTTAATTAGTTTGAGAAAATAATTTTATTTTGTAGTTAAATTTAGTTATGTTTT 657
||||||||||||| | | || | ||| |||||||||||||||||| || ||||||
Sbjct 592 TGTTGGTTTAATT--T---A-AA--T--TTT-ATTTTGTAGTTAAATTTAATT-TGTTTT 639
Query 658 CATTTTCGAGTTTGG 672
|||||||||||||||
Sbjct 640 CATTTTCGAGTTTGG 654
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32551727256
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5