BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485216
Length=876
Score E
Sequences producing significant alignments: (Bits) Value
AT3G48580.1 | Symbols: XTH11 | xyloglucan endotransglucosylase/... 1387 0.0
> AT3G48580.1 | Symbols: XTH11 | xyloglucan endotransglucosylase/hydrolase
11 | chr3:18007181-18008488 FORWARD LENGTH=1038
Length=1038
Score = 1387 bits (751), Expect = 0.0
Identities = 839/881 (95%), Gaps = 7/881 (1%)
Strand=Plus/Plus
Query 1 AGAGAGATCAAGATGAGAGGATCTGATCAGAAGATTCTACTGATGGTTCTGGTGGTTGTA 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 46 AGAGAGATCAAGATGAGAGGATCTGATCAGAAGATTCTACTGATGGTTATGGTGGTTGTA 105
Query 61 GCGGTTTTAGCGGCGGCTCGAGGTC---AAGAGACTACTGGATTCGTGACATGGGCCAAC 117
|| ||| |||| ||||||| ||| | ||||||||||||||||||||||||||| |||
Sbjct 106 GCAGTTGTAGCTGCGGCTCAAGGCCAAGAAGAGACTACTGGATTCGTGACATGGGGTAAC 165
Query 118 AATTACTACCAGACATGGGGACATCAAGCTTTGGTTAATAATAAAACCTCTGAGCTCCAG 177
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 166 AATTACTACCAGACATGGGGACATCAAGCTTTGGTTATTAATAAAACCTCTGAGCTCCAG 225
Query 178 CTCACACTCGATAATAACTCTGGGTCCGGGTTTGAATCCCAATTGATTTACGGATCAGGA 237
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 226 CTCACCCTCGATAAAAACTCTGGGTCCGGGTTTGAATCCCAATTGATTTACGGATCAGGA 285
Query 238 TACTTCAACGTAAGAATCAAGGCACCTCAAACTACGTCTACGGGAGTCATTACTTCTTTC 297
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 286 TACTTCAACGTAAGAATCAAGGCACCTCAAACTACGTCTACGGGAGTCATTACTTCCTTC 345
Query 298 TACTTAATCTCCCGTTCAAGCCGCCATGATGAGCTCTGTTTCCAGATTTTGGGAAGGAAT 357
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 346 TATTTAATCTCCCGTTCAAGCCGCCATGATGAGCTCTGTTTCCAGATCTTGGGAAAGAAT 405
Query 358 GGGCCACCGTATTTGCTGAATACGAATATGTATCTGTACGGTGAAGGAGGCAAAGATCAG 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 406 GGGCCACCGTATTTGCTGAATACGAATATGTATCTGTACGGTGAAGGAGGCAAAGATCAG 465
Query 418 AGGTTTCGTCTCTGGTTTGATCCAACCAAAGATTATCATTCCTACAGTTTTCTTTGGAAC 477
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 466 AGGTTTCGTCTCTGGTTTGATCCAACAAAAGATTACCATTCCTACAGTTTTCTTTGGAAC 525
Query 478 CCAAATCAACTTGTGTTTTATGTCGACGATACTCCAATCAGGGTTTACAGGAAGAATCCA 537
|| |||||||||||||||||||| |||||||| || |||||||| ||||| |||||||||
Sbjct 526 CCTAATCAACTTGTGTTTTATGTTGACGATACACCGATCAGGGTGTACAGCAAGAATCCA 585
Query 538 GATGTTTACTACCCATCAGTGCAGACAATGTTCCTAATGGGAAGTGTGCAAAACGGATCG 597
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 586 GATGTTTACTACCCATCGGTGCAGACAATGTTCCTAATGGGAAGTGTGCAAAACGGATCG 645
Query 598 ATAATTAACCCGAAGCAGATGCCTTACATTGCTAAGTTCCAGGCATCAAAGATTGAAGGG 657
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 646 ATAATTGACCCGAAGCAGATGCCTTACATTGCTAAGTTCCAGGCATCAAAGATTGAAGGG 705
Query 658 TGTCAA-ACTGAGTTCATGGGAATTGATAAATGCACTGATCCTAAATTCTGGTGGAATCG 716
||| || ||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 706 TGT-AAGACTGAGTTCATGGGAATAGATAAATGCACTGATCCTAAGTTCTGGTGGAATCG 764
Query 717 CAAACAGCTAAGCTCTAAAGAGAAGGA-ACTGTATATAAACGCAAAGAAGATGTACCTGG 775
||||||||||||||||||||||||| | |||||| ||||||||| ||||| ||||||||
Sbjct 765 CAAACAGCTAAGCTCTAAAGAGAAG-ACACTGTACCTAAACGCAAGGAAGACGTACCTGG 823
Query 776 ATTATGACTATTGTTCTGACAGACAGCGGTATCCAAAGGTTCCTCAAGAATGCGGAAGTT 835
|||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||
Sbjct 824 ATTATGACTATTGTTCTGACAGACAGCGATATCCAAAGGTGCCTCAAGAATGTGGAAGTT 883
Query 836 ACAGTTAGAGAAAGATCAATACCTGTCACAGGGTTAAGCCT 876
||| |||||||||||||||||||||||||||||||||||||
Sbjct 884 ACACTTAGAGAAAGATCAATACCTGTCACAGGGTTAAGCCT 924
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42749259097
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5