BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485217
Length=916
Score E
Sequences producing significant alignments: (Bits) Value
AT3G48590.1 | Symbols: HAP5A, ATHAP5A, NF-YC1 | nuclear factor ... 1271 0.0
AT5G63470.1 | Symbols: NF-YC4 | nuclear factor Y, subunit C4 | ... 652 0.0
> AT3G48590.1 | Symbols: HAP5A, ATHAP5A, NF-YC1 | nuclear factor
Y, subunit C1 | chr3:18008657-18009982 REVERSE LENGTH=985
Length=985
Score = 1271 bits (688), Expect = 0.0
Identities = 874/956 (91%), Gaps = 44/956 (5%)
Strand=Plus/Plus
Query 1 ATCCAAAACCGACCAATGGACACCAACAACAACCAGCAACCACCACCCTCCGCCGCCGGA 60
|||||||||||||||||||| | | |||||||||||||||||| |||||||||||||||
Sbjct 30 ATCCAAAACCGACCAATGGATA-C--CAACAACCAGCAACCACCTCCCTCCGCCGCCGGA 86
Query 61 ATCCCTCCTCCTCCACCTGGAACCACCATCTCCGCCGCCGGAGGAGGAGCTTCTTACCAC 120
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 87 ATCCCTCCTCCACCACCTGGAACCACCATCTCCGCCGCAGGAGGAGGAGCTTCTTACCAC 146
Query 121 CACCTTCTCcaacaacaacaacaacaGCTCCAACTATTCTGGACCTACCAACGCCAAGAG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 147 CACCTTCTCCAACAACAACAACAACAGCTCCAACTATTCTGGACCTACCAACGCCAAGAG 206
Query 181 ATCGAACAAGTTAACGATTTCAAAAACCATCAGCTTCCACTAGCTCGGATCAAAAAGATC 240
||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 207 ATCGAACAAGTTAACGATTTCAAAAACCATCAGCTTCCACTAGCTAGGATAAAAAAGATC 266
Query 241 ATGAAAGCCGATGAAGATGTTCGTATGATCTCCGCAGAAGCACCGATTCTCTTCGCCAAA 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 267 ATGAAAGCCGATGAAGATGTTCGTATGATCTCCGCAGAAGCACCGATTCTCTTCGCGAAA 326
Query 301 GCTTGTGAGCTTTTCATTCTCGAGCTCACGATCAGATCTTGGCTTCACGCTGAGGAGAAT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 327 GCTTGTGAGCTTTTCATTCTCGAGCTCACGATCAGATCTTGGCTTCACGCTGAGGAGAAT 386
Query 361 AAACGTCGTACGCTTCAGAAAAACGATATCGCTGCTGCTATTACTAGGACCGATATCTTC 420
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 387 AAACGTCGTACGCTTCAGAAAAACGATATCGCTGCTGCGATTACTAGGACTGATATCTTC 446
Query 421 GATTTCCTTGTTGATATTGTTCCTAGAGATGAGATTAAGGACGAGGCCGCCGTGCTGGGC 480
|||||||||||||||||||||||||||||||||||||||||||| ||||| || || ||
Sbjct 447 GATTTCCTTGTTGATATTGTTCCTAGAGATGAGATTAAGGACGAAGCCGCAGTCCTCGGT 506
Query 481 GGTGGGATGGTGGTGGCTCCCACCGCGAGCGGCGTGCCTTACTATTATCCGCCGATGGGA 540
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 507 GGTGGAATGGTGGTGGCTCCTACCGCGAGCGGCGTGCCTTACTATTATCCGCCGATGGGA 566
Query 541 CAACCAGCTGGTCCTGGAGGGATGATGATTGGGAGACCAGCTATGGATCCGAGTGGTGTT 600
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 567 CAACCAGCTGGTCCTGGAGGGATGATGATTGGGAGACCAGCTATGGATCCGAATGGTGTT 626
Query 601 TATGTGCAGCCTCCGTCTCAGGCGTGGCAGAGCGTATGGCAGACTTCGGCGGGGACTGGA 660
||||| |||||||||||||||||||||||||| || |||||||||||| ||||||| |||
Sbjct 627 TATGTCCAGCCTCCGTCTCAGGCGTGGCAGAGTGTTTGGCAGACTTCGACGGGGACGGGA 686
Query 661 GATGATGTCTCTTACGGCAGTGGTGGAAGCACCGGTC-------TC--GACGGCCAAGGT 711
|||||||||||||| || ||||||||||| |||||| || ||||||||||||
Sbjct 687 GATGATGTCTCTTATGGTAGTGGTGGAAGTTCCGGTCAAGGGAATCTCGACGGCCAAGGT 746
Query 712 TAAG-TCAAGAGTATTCTAGATGATGCTTGA--------A-GACAGCAGATATTAGTCGA 761
|||| ||| |||||||| ||||||||||||| | || ||||||||||||||||
Sbjct 747 TAAGCTCA-GAGTATTCCAGATGATGCTTGACCTGCTTGAAGATAGCAGATATTAGTCGA 805
Query 762 CTTTGCCTTGAATTTTGGATGTGTTTGATAGATTATGCCTGAATTCAAT-AA--G----- 813
| | |||||||||||||||||||||||||||||||||||| |||||||| || |
Sbjct 806 CCTCGCCTTGAATTTTGGATGTGTTTGATAGATTATGCCTAAATTCAATGAAAAGGCTTC 865
Query 814 ---A--G-----TaaaaaaaaCTCTTATTTCCCTCTGTTAACTTATATGTTATTGCAGCA 863
| | |||||||||||||| |||| |||||||||| |||||||||||| ||||
Sbjct 866 GTTAAAGAAGAGTAAAAAAAACTCTTGTTTCTCTCTGTTAACGTATATGTTATTGTAGCA 925
Query 864 AA-CCATCATTGTTGTGACTTTGCCTAACTATATA-A-TCTAATGTGCAGTTTCTA 916
|| ||||||||| || ||||| ||||||||||||| | ||||||||||||||||||
Sbjct 926 AAACCATCATTGCTGCGACTTAGCCTAACTATATATAATCTAATGTGCAGTTTCTA 981
> AT5G63470.1 | Symbols: NF-YC4 | nuclear factor Y, subunit C4
| chr5:25415701-25417098 REVERSE LENGTH=1103
Length=1103
Score = 652 bits (353), Expect = 0.0
Identities = 556/651 (85%), Gaps = 25/651 (4%)
Strand=Plus/Plus
Query 56 CCGGAATCCCTCCTCCTCCACCTGGAACCACCATC--TCCGCCGCCGGAGGAGGAGCTTC 113
||| |||||||||||| ||| |||| | | |||| | | | ||||||||||||| |
Sbjct 91 CCGTAATCCCTCCTCCACCATCTGG-ATCTGCATCAAT-AGTCACCGGAGGAGGAGCGAC 148
Query 114 TTACCACCACCTTCTCcaacaacaacaacaacaGCTCCAACTATTCTGGACCTACCA-AC 172
||||||||||| ||||| |||||||| |||||||| ||| | |||||||| ||||| |
Sbjct 149 ATACCACCACCTCCTCCAGCAACAACAGCAACAGCTTCAAATGTTCTGGACATACCAGA- 207
Query 173 GCCAAGAGATCGAACAAGTTAACGATTTCAAAAACCATCAGCTTCCACTAGCTCGGATCA 232
| |||||||||||||| || ||||||||||||||||||||||| || |||||||| ||||
Sbjct 208 GACAAGAGATCGAACAGGTAAACGATTTCAAAAACCATCAGCTCCCTCTAGCTCGTATCA 267
Query 233 AAAAGATCATGAAAGCCGATGAAGATGTTCGTATGATCTCCGCAGAAGCACCGATTCTCT 292
|||| ||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 268 AAAAAATCATGAAAGCTGATGAAGATGTGCGTATGATCTCCGCCGAAGCACCGATTCTCT 327
Query 293 TCGCCAAAGCTTGTGAGCTTTTCATTCTCGAGCTCACGATCAGATCTTGGCTTCACGCTG 352
|||| |||||||||||||||||||||||||| || ||||| |||||||||||||||||||
Sbjct 328 TCGCGAAAGCTTGTGAGCTTTTCATTCTCGAACTTACGATTAGATCTTGGCTTCACGCTG 387
Query 353 AGGAGAATAAACGTCGTACGCTTCAGAAAAACGATATCGCTGCTGCTATTACTAGGACCG 412
| ||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 388 AAGAGAACAAACGTCGTACGCTTCAGAAAAACGATATCGCTGCTGCGATTACTAGAACCG 447
Query 413 ATATCTTCGATTTCCTTGTTGATATTGTTCCTAGAGATGAGATTAAGGACGAGGCCGCCG 472
|||||||||||||||||||||||||||||||||| || ||||| ||||| |||| | |
Sbjct 448 ATATCTTCGATTTCCTTGTTGATATTGTTCCTAGGGAAGAGATCAAGGAAGAGGAAGATG 507
Query 473 T-GC-TGGGC----GGTGG-G-ATGGT--GGTGGCTCCCACCGCGAGCGGCGTGCCTTAC 522
|| | ||| ||||| | | ||| ||| |||||| |||||||||| || |||||
Sbjct 508 CAGCATCGGCTCTTGGTGGAGGA-GGTATGGTTGCTCCCGCCGCGAGCGGTGTTCCTTAT 566
Query 523 TATTATCCGCCGATGGGACAACCAGCTGGT-CCTGGAGGGATGATGATTGGGAGACCAGC 581
|||||||| |||||||||||||| || ||| |||||||||||||||||||| ||||| ||
Sbjct 567 TATTATCCACCGATGGGACAACCGGC-GGTTCCTGGAGGGATGATGATTGGAAGACCGGC 625
Query 582 TATGGATCCGAGTGGTGTTTATG-TGCAGCCTCCGTCTCAGGCGTGGCAGAGCGTATGGC 640
|||||||| || |||||||||| | |||||||| |||||||| ||||| ||||| ||||
Sbjct 626 GATGGATCCTAGCGGTGTTTATGCT-CAGCCTCCTTCTCAGGCATGGCAAAGCGTTTGGC 684
Query 641 AGACTTCGGC-GG-GGACTGGAGATGATGTCTCTTACGGCAGTGGTGGAAG 689
||| ||| || || || ||| |||||||| ||||| || ||||| |||||
Sbjct 685 AGAATTCAGCTGGTGG--TGGTGATGATGTGTCTTATGGAAGTGGAGGAAG 733
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44758624977
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5