BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485222
Length=2229
Score E
Sequences producing significant alignments: (Bits) Value
AT3G48670.1 | Symbols: IDN2, RDM12 | XH/XS domain-containing pr... 3507 0.0
AT4G01780.1 | Symbols: | XH/XS domain-containing protein | chr... 616 4e-175
> AT3G48670.1 | Symbols: IDN2, RDM12 | XH/XS domain-containing
protein | chr3:18030781-18034065 FORWARD LENGTH=2447
Length=2447
Score = 3507 bits (1899), Expect = 0.0
Identities = 2126/2235 (95%), Gaps = 17/2235 (1%)
Strand=Plus/Plus
Query 1 TTTCTTCAACCCTAGGTGAAATAAAGGACGACCCAAAACAAAACAAGTGACgagagagga 60
||| ||||||||||||||||||||||||||| || |||||||||||||||||||| |
Sbjct 21 TTTGTTCAACCCTAGGTGAAATAAAGGACGA-CC----CAAAACAAGTGACGAGAGAGCA 75
Query 61 gagaggagCTTCTTCTTCTGGACACTGAACAGT--GAGCACCCATCTCCAGCCTCTTCCT 118
|||| ||||||||||||| |||||||||||||| ||||||||||||||| |||||||||
Sbjct 76 GAGA-GAGCTTCTTCTTCCGGACACTGAACAGTGAGAGCACCCATCTCCAACCTCTTCCT 134
Query 119 GAACAAGATGGGGAGCACTGTGATTTTGAGCTCAGATGATGAAGATTCAGATATTAGTGA 178
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 135 GAACAAGATGGGAAGCACTGTGATTTTAAGCTCAGATGATGAAGATTCAGATATTAGTGA 194
Query 179 ATCTGAAATGGATGAGTATGGAGACAAAATGTACTTAAATCTTAAAGGTGGGAAGCTCAA 238
|||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||
Sbjct 195 ATCTGAAATGGATGAGTATGGAGACAAAATGTACCTAAACCTTAAAGGTGGGAAGCTGAA 254
Query 239 AGTGAGACTCTCTCCTCAAGCTTTTGTCTGTCCTTATTGTCCAAACAAGAAGAAACCTAG 298
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 255 AGTGAGACTCTCTCCTCAAGCTTTTATCTGTCCTTATTGTCCAAACAAGAAGAAAACTAG 314
Query 299 TTTTCAATACAAAGATCTCCTTCAACATGCTTCTGGAGTTGGTAATAGCAATTCAGATAA 358
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 315 TTTTCAATACAAAGATCTTCTTCAACATGCTTCTGGAGTTGGTAATAGCAATTCTGATAA 374
Query 359 AAGAAGTGCAAAGGAGAAAGCAAGTCACCTTGCTCTTGTCAAATACCTTCAACAGGATCT 418
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 375 AAGAAGTGCAAAGGAGAAAGCAAGTCACCTTGCTCTTGTCAAATACCTTCAACAAGATCT 434
Query 419 TGCTGATTCAGCTGT-AGAAGCAGAGCCTTCATCGAAGCGTCAGAAAAACGGAAACCCTA 477
||||||||||||| | |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 435 TGCTGATTCAGCT-TCAGAAGCAGAGCCTTCATCAAAGCGTCAGAAAAACGGAAACCCTA 493
Query 478 TTCAAGATTGTGATCAGGACGAGAAGCTTGTCTATCCTTGGAAAGGTATTGTGGTTAATA 537
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 494 TTCAAGATTGTGATCATGACGAGAAGCTTGTGTATCCTTGGAAAGGTATTGTGGTGAATA 553
Query 538 TTCCAACTACAAAGGCACAAGATGGTCGATCTGCGGGTGAGAGTGGATCGAAGCTAAGGG 597
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 554 TTCCAACTACAAAGGCACAAGATGGTCGATCTGCGGGCGAGAGTGGATCGAAGCTAAGGG 613
Query 598 ATGAGTACATTCTAAGAGGATTTAACCCGACTAGAGTTCGTCCTTTATGGAACTACTGGG 657
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 614 ATGAGTATATTCTAAGAGGATTTAACCCGACTAGAGTTCGTCCTTTATGGAACTACTTGG 673
Query 658 GACATTCAGGAACAGCTATTGTGGAGTTTAACAAAGATTGGAATGGACTTCACAATGGTC 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 674 GACATTCAGGAACAGCTATTGTGGAGTTTAACAAAGATTGGAATGGACTTCACAATGGTC 733
Query 718 TTTTGTTTGACAAGGCTTAT-CGAGTAGACGGTCATGGAAAGAAGGATTGGTTGAAAAAA 776
|||||||||||||||||||| | |||||| |||||||| |||||||| |||||||| |||
Sbjct 734 TTTTGTTTGACAAGGCTTATAC-AGTAGATGGTCATGGGAAGAAGGACTGGTTGAAGAAA 792
Query 777 GATGGTCCCAAGTTAGGTCTTTACGCGT-GGATTGCTCGTGCTGATGATTATAACGGTAA 835
|| |||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 793 GACGGTCCCAAGTTAGGTCTTTACG-GTTGGATTGCTCGTGCTGATGATTATAACGGTAA 851
Query 836 TAATATTATTGGAGAAAACCTGAGGAAGACAGGTGATCTCAAAACTATAGCTGAGCTTAC 895
||||||||||||||||||| |||||||||| |||||||| ||||||||||||||||||||
Sbjct 852 TAATATTATTGGAGAAAACTTGAGGAAGACGGGTGATCTGAAAACTATAGCTGAGCTTAC 911
Query 896 GGAAGAAGAGGCGAGGAAACAGCAAAAGCTAGTGCAGAATCTGACACAACTTGTAGAAGA 955
|||||||||||||||||||||| || ||| |||||||| |||| |||||||||||||||
Sbjct 912 GGAAGAAGAGGCGAGGAAACAGGAATTGCTTGTGCAGAACCTGAGACAACTTGTAGAAGA 971
Query 956 AAAGAAGAAAGACATGAAGCAGATTGAGGAGCTTTGTTCAGTGAAGTCAAAGGAACTTAA 1015
||||| |||||||||||| |||||||||||||||||||||| |||||| ||||||||||
Sbjct 972 GAAGAAAAAAGACATGAAGGAGATTGAGGAGCTTTGTTCAGTTAAGTCAGAGGAACTTAA 1031
Query 1016 TCAGTTGATGGAAGAGAAGGAGAAGAATGAACAAAAGCATTACCGAGAGCTGAATGCTAT 1075
|||||||||||||||||||||||||||| | |||||||||||||| ||||||||||||||
Sbjct 1032 TCAGTTGATGGAAGAGAAGGAGAAGAATCAGCAAAAGCATTACCGTGAGCTGAATGCTAT 1091
Query 1076 ACAAGAGAGAACAATGAGTCACATTCAAAAGATAGTTGATGATCATGAGAAATTGAAGAG 1135
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1092 ACAAGAAAGAACAATGAGTCACATTCAAAAGATAGTTGATGATCATGAGAAATTGAAGAG 1151
Query 1136 GCTGTTGGAGTCAGAGAAGAAGAAACTCGAAATCAAAGGTAATGAGTTGGCAAAGCGCGA 1195
||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1152 GCTGTTGGAGTCAGAGAGGAAGAAACTCGAAATCAAATGTAATGAGTTGGCAAAGCGCGA 1211
Query 1196 AGTGCACAATGGAACCGAGAGAATGAAATTGTCTGAAGATCTTGAACAGAACGCATCTAA 1255
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1212 AGTGCACAATGGAACCGAGAGAATGAAATTGTCTGAAGATCTTGAACAGAATGCATCTAA 1271
Query 1256 GAATAGTTCTCTTGAACTAGCAGCCATGGAACAACAAAAGGCAGACGAGGAAGTTAAAAA 1315
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1272 GAATAGCTCTCTTGAACTAGCTGCCATGGAACAACAAAAGGCAGACGAGGAAGTTAAAAA 1331
Query 1316 ACTTGCGGAAGACCAAAGGAGGCAAAAGGAGGAGCTTCATGAGAAAATCATAAGACTAGA 1375
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1332 ACTTGCTGAAGACCAAAGGAGGCAAAAGGAGGAGCTTCATGAGAAAATCATAAGACTAGA 1391
Query 1376 AAGACAAAGAGATCAGAAACAAGCGATTGAGCTAGAGGTTGAGCAGTTGAAAGGACAGCT 1435
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1392 AAGACAGAGAGATCAGAAACAAGCGATTGAGCTAGAAGTTGAGCAGTTGAAAGGACAGCT 1451
Query 1436 TAATGTGATGAAGCACATGGCATCAGACGGCGATGCTGAAATTGTGAAAAAGGTGGAAAT 1495
|||||||||||||||||||||||||| |||||||||||| |||||||| ||||||| ||
Sbjct 1452 CAATGTGATGAAGCACATGGCATCAGATGGCGATGCTGAAGTTGTGAAAGAGGTGGACAT 1511
Query 1496 CATCTTTAAAGATTTAGGTGAGAAGGAAGGAGAACTCGAAGACCTCGATAAATTTAACCA 1555
|||||| |||||||||||||||||||||| | |||||| ||| |||||||||||||||||
Sbjct 1512 CATCTTCAAAGATTTAGGTGAGAAGGAAGCACAACTCGCAGATCTCGATAAATTTAACCA 1571
Query 1556 AACTCTTATCCTTAGAGAGCGCAGGACTAACGATGAGCTTCAAGAAGCTCGTAAAGAATT 1615
||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct 1572 AACTCTTATCCTTAGAGAGCGCAGGACCAACGATGAGCTTCAAGAAGCTCATAAAGAATT 1631
Query 1616 GGTAAACATTATGAAAGAGTGGAAAACAACTATCGGTGTTAAGAGAATGGGAGAGCTCGT 1675
|||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||
Sbjct 1632 GGTAAACATTATGAAAGAATGGAACACAAATATCGGTGTTAAGAGAATGGGAGAGCTCGT 1691
Query 1676 GACGCAACCGTTCGTGGATGCAATGCAGCAGAAGTATTGTCAGCAAGATGTGGAGGACAG 1735
|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1692 GACGAAACCATTCGTGGATGCAATGCAGCAGAAGTATTGTCAGCAAGATGTGGAGGACCG 1751
Query 1736 AGCAGTTGAAGTTCTCCAACTTTGGGAAGGCTATCTCAGAGATCCAGATTGGCATCCATA 1795
|||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||
Sbjct 1752 AGCAGTTGAAGTTCTCCAACTTTGGGAACACTATCTCAAAGATTCAGATTGGCATCCAT- 1810
Query 1796 T-AAGCGGATCAAGCTCGAAAATCAAGATAGAGAAGTGGCAGTGATAGATGATAGAGACG 1854
| |||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 1811 TCAAGCGGGTCAAGCTCGAAAATGAAGATAGAGAAGTGGAAGTGATAGATGATAGAGACG 1870
Query 1855 AAAAGCTGAGGGAGCTAAAGGCAGATTTGGGAGACGGTCCTTACAATGCGGTCGCAAAAG 1914
|||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||
Sbjct 1871 AAAAGCTGAGGGAGCTAAAGGCAGATTTGGGAGATGGTCCTTACAATGCGGTCACGAAAG 1930
Query 1915 CTTTGTTGGAGATAAACGAGTATAACCCGAGTGGAAGTTATATTACAACAGAGCTATGGA 1974
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1931 CTTTGTTGGAGATAAACGAGTATAACCCGAGTGGAAGGTATATTACAACAGAGCTATGGA 1990
Query 1975 ACTTAAAAGAAGATAAGAGGGCTACACTTGAAGAAGGTGTCACTTGTTTACTTGATCAAT 2034
|||| |||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1991 ACTTCAAAGCAGATAAGAAGGCTACACTTGAAGAAGGTGTCACTTGTTTACTTGATCAAT 2050
Query 2035 GGGAAAAGGCTAAACGCAAGCGTGGAATGGCTTAAAGCTGCAAGAAGATGGACATGAGAC 2094
|||||||||| ||||||||||||||||||||||| |||||||||| |||||||||| |||
Sbjct 2051 GGGAAAAGGCGAAACGCAAGCGTGGAATGGCTTAGAGCTGCAAGATGATGGACATGGGAC 2110
Query 2095 TGAATAAAAAGCCGATGCGGTTTTTAGTTGCAGAGAAATGTGTTTGGTTTGATTAAACTT 2154
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2111 TGAATAAAAAGCCGATGCGGTTTTTAGTTGCAGAGAAATGTGTTTGGTTTGACCAAACTT 2170
Query 2155 TGGTGGATTCTGTTTGTTTTTCTTCTCAGAACTTAGGTGAATAATGGACACAACTTTGAT 2214
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 2171 TGGTGGATTCTGTTTGTTTTTCTTCTCAGAACTTAG-TGAATAATTGACACAACTTTGAT 2229
Query 2215 GTCTTGCATCGTTTC 2229
||||||||||| |||
Sbjct 2230 GTCTTGCATCGGTTC 2244
> AT4G01780.1 | Symbols: | XH/XS domain-containing protein | chr4:767310-769246
FORWARD LENGTH=1419
Length=1419
Score = 616 bits (333), Expect = 4e-175
Identities = 384/409 (94%), Gaps = 2/409 (0%)
Strand=Plus/Plus
Query 1662 ATGGGAGAGCTCGTGACGCAACCGTTCGTGGATGCAATGCAGCAGAAGTATTGTCAGCAA 1721
|||||||||||||| | | |||| ||||||||||||||||||||||||||||||||| ||
Sbjct 1012 ATGGGAGAGCTCGTAAGGAAACCATTCGTGGATGCAATGCAGCAGAAGTATTGTCAGGAA 1071
Query 1722 GATGTGGAGGACAGAGCAGTTGAAGTTCTCCAACTTTGGGAAGGCTATCTCAGA-GATCC 1780
|||||||||||| ||||||||||||||||||||||||||||| |||| ||| | |||||
Sbjct 1072 GATGTGGAGGACCGAGCAGTTGAAGTTCTCCAACTTTGGGAACACTATATCA-ACGATCC 1130
Query 1781 AGATTGGCATCCATATAAGCGGATCAAGCTCGAAAATCAAGATAGAGAAGTGGCAGTGAT 1840
||||||||||||||| |||||| |||||||||||||||||||||||||||||| ||||||
Sbjct 1131 AGATTGGCATCCATACAAGCGGGTCAAGCTCGAAAATCAAGATAGAGAAGTGGAAGTGAT 1190
Query 1841 AGATGATAGAGACGAAAAGCTGAGGGAGCTAAAGGCAGATTTGGGAGACGGTCCTTACAA 1900
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1191 AGATGATAGAGACGAAAAGCTGAGGGAGCTAAAGGCAGATTTGGGAGATGGTCCTTACAA 1250
Query 1901 TGCGGTCGCAAAAGCTTTGTTGGAGATAAACGAGTATAACCCGAGTGGAAGTTATATTAC 1960
||||||| | ||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1251 TGCGGTCACGAAAGCTTTGTTGGAGATAAACGAGTATAACCCGAGTGGAAGGTACATTAC 1310
Query 1961 AACAGAGCTATGGAACTTAAAAGAAGATAAGAGGGCTACACTTGAAGAAGGTGTCACTTG 2020
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1311 AACAGAGCTATGGAACTTCAAAGAAGATAAGAGGGCTACACTTGAAGAAGGTGTCACTTG 1370
Query 2021 TTTACTTGATCAATGGGAAAAGGCTAAACGCAAGCGTGGAATGGCTTAA 2069
||||||||||||||||||||| || ||||| ||||| |||||||| |||
Sbjct 1371 TTTACTTGATCAATGGGAAAAAGCGAAACGTAAGCGCGGAATGGCGTAA 1419
Score = 433 bits (234), Expect = 4e-120
Identities = 270/288 (94%), Gaps = 0/288 (0%)
Strand=Plus/Plus
Query 1334 GAGGCAAAAGGAGGAGCTTCATGAGAAAATCATAAGACTAGAAAGACAAAGAGATCAGAA 1393
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 720 GAGGCAAAAGGAGGAGCTTCATGAGAAAATCATAAGACTAGAAAGACAGATAGATCAGGT 779
Query 1394 ACAAGCGATTGAGCTAGAGGTTGAGCAGTTGAAAGGACAGCTTAATGTGATGAAGCACAT 1453
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 780 ACAAGCGATTGAGCTAGAGGTTGAGCAGTTGAAAGGACAGCTCAATGTGATGAAGCACAT 839
Query 1454 GGCATCAGACGGCGATGCTGAAATTGTGAAAAAGGTGGAAATCATCTTTAAAGATTTAGG 1513
||||||||| ||||||||| || |||||||| ||||||| |||||||| ||||| ||||
Sbjct 840 GGCATCAGATGGCGATGCTCAAGTTGTGAAAGAGGTGGACATCATCTTCAAAGACTTAGT 899
Query 1514 TGAGAAGGAAGGAGAACTCGAAGACCTCGATAAATTTAACCAAACTCTTATCCTTAGAGA 1573
||||||||||| |||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 900 TGAGAAGGAAGCAGAACTCGCAGACCTCAATAAATTTAACCAAACTCTTATCCTTAGAGA 959
Query 1574 GCGCAGGACTAACGATGAGCTTCAAGAAGCTCGTAAAGAATTGGTAAA 1621
||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 960 GCGCAGGACCAATGATGAGCTTCAAGAAGCTCGTAAAGAATTGGTAAA 1007
Score = 217 bits (117), Expect = 5e-55
Identities = 129/135 (96%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 1111 TTGATGATCATGAGAAATTGAAGAGGCTGTTGGAGTCAGAGAAGAAGAAACTCGAAATCA 1170
||||||| ||||||| ||||| || |||||||||||||||||||||||||||||||||||
Sbjct 587 TTGATGACCATGAGAGATTGACGAAGCTGTTGGAGTCAGAGAAGAAGAAACTCGAAATCA 646
Query 1171 AAGGTAATGAGTTGGCAAAGCGCGAAGTGCACAATGGAACCGAGAGAATGAAATTGTCTG 1230
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 647 AAGGTAATGAGTTGGCAAAGCCCCAAGTGCACAATGGAACCGAGAGAATGAAATTGTCTG 706
Query 1231 AAGATCTTGAACAGA 1245
|||||||||||||||
Sbjct 707 AAGATCTTGAACAGA 721
Score = 183 bits (99), Expect = 5e-45
Identities = 115/123 (93%), Gaps = 0/123 (0%)
Strand=Plus/Plus
Query 709 ACAATGGTCTTTTGTTTGACAAGGCTTATCGAGTAGACGGTCATGGAAAGAAGGATTGGT 768
||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |||
Sbjct 338 ACAATGGTCTTTTGTTTGACAAGGCTTATAGAGTAGATGGTCATGGAAAGAAGGACTGGA 397
Query 769 TGAAAAAAGATGGTCCCAAGTTAGGTCTTTACGCGTGGATTGCTCGTGCTGATGATTATA 828
|||||||||| |||||||||||||||||||||| |||||| ||| |||||||||||||||
Sbjct 398 TGAAAAAAGACGGTCCCAAGTTAGGTCTTTACGGGTGGATAGCTGGTGCTGATGATTATA 457
Query 829 ACG 831
|||
Sbjct 458 ACG 460
Score = 152 bits (82), Expect = 1e-35
Identities = 96/103 (93%), Gaps = 0/103 (0%)
Strand=Plus/Plus
Query 521 AGGTATTGTGGTTAATATTCCAACTACAAAGGCACAAGATGGTCGATCTGCGGGTGAGAG 580
||| ||||| |||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 237 AGGCATTGTTGTTAATATTCCAACTACAAAGGCACAAGATGGTCGACCCGCGGGTGAGAG 296
Query 581 TGGATCGAAGCTAAGGGATGAGTACATTCTAAGAGGATTTAAC 623
|||||||||||||||||||||||| ||||| |||||||| |||
Sbjct 297 TGGATCGAAGCTAAGGGATGAGTATATTCTCAGAGGATTAAAC 339
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 110591800635
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5