BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485223
Length=1109
Score E
Sequences producing significant alignments: (Bits) Value
AT3G48680.1 | Symbols: GAMMA CAL2 | gamma carbonic anhydrase-li... 1626 0.0
> AT3G48680.1 | Symbols: GAMMA CAL2 | gamma carbonic anhydrase-like
2 | chr3:18035011-18037041 FORWARD LENGTH=1135
Length=1135
Score = 1626 bits (880), Expect = 0.0
Identities = 1045/1122 (93%), Gaps = 22/1122 (2%)
Strand=Plus/Plus
Query 1 CTCCCGACGActcctctgtgtctcctcctccgggaa-------g-ctctctctatctctc 52
||||||||||||||||| |||||||||||||||||| | |||||||| ||||||
Sbjct 1 CTCCCGACGACTCCTCTCTGTCTCCTCCTCCGGGAAGCTTTCTGTCTCTCTCTCTCTCTC 60
Query 53 tcGACA-AA-TCCTTGAAGAATCCGATTCCATAGCAATGGCGACTTCGCTAGCTCGAATC 110
|| ||| || |||||||||||||||||||||| |||||||||||||| |||| ||||||
Sbjct 61 TCTACACAAGACCTTGAAGAATCCGATTCCATAACAATGGCGACTTCGTTAGCACGAATC 120
Query 111 TATAAAAGAAGCGTGACAACGGCAGTGACTTCGAATCTGATTCGGCGTTACTTCGCCGCC 170
| |||||||||| | ||| |||| || | |||||||||||||||||||||||||||||
Sbjct 121 TCTAAAAGAAGCATAACATCGGCTGTTTCATCGAATCTGATTCGGCGTTACTTCGCCGCG 180
Query 171 GAAGCAGTTGCGGTGGCGACGACGGAAACACCTAAACCGAAATCGCAAATCACGCCGTCG 230
|||||||| |||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 181 GAAGCAGTAGCGGTGGCGACGACGGAAACACCTAAACCGAAATCGCAGGTGACGCCGTCG 240
Query 231 CCGGATCGGGTTAAGTGGGACTACAGAGGCCAAAGACAGATCATTCCTCTGGGACAGTGG 290
||||||||||| || ||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 241 CCGGATCGGGTAAAATGGGACTACAGAGGCCAGAGACAGATAATTCCTCTGGGACAGTGG 300
Query 291 CTACCGAAGGTAGCTGTAGATGCCTACGTGGCACCTAACGTTGTGTTGGCTGGTCAGGTC 350
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 301 CTACCGAAGGTAGCTGTAGATGCTTACGTGGCACCTAACGTTGTGTTGGCTGGTCAGGTC 360
Query 351 ACCGTCTGGGACGGCTCCTCTGTATGGAACGGGGCCGTTTTGAGAGGAGATCTTAACAAG 410
||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||
Sbjct 361 ACCGTCTGGGACGGCTCGTCTGTATGGAACGGTGCCGTTTTGAGAGGAGATCTTAATAAG 420
Query 411 ATCACTGTTGGATTCTGCTCAAATGTCCAGGAACGGTGTGTTGTTCATGCTGCGTGGTCG 470
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 ATCACCGTTGGATTCTGCTCAAATGTCCAGGAACGGTGTGTTGTTCATGCTGCGTGGTCG 480
Query 471 TCCCCAACAGGATTGCCAGCACAGACATTGATCGATAGGTACGTGACAGTTGGTGCATAC 530
|| || |||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 481 TCGCCTACAGGATTACCAGCACAAACATTGATCGATAGGTACGTGACAGTTGGTGCATAC 540
Query 531 AGTCTTTTAAGATCATGCACTATCGAACCCGAATGCATCATCGGGCAACACTCAATCCTA 590
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 541 AGTCTTTTAAGATCATGCACTATCGAACCAGAATGCATCATCGGGCAACACTCAATCCTA 600
Query 591 ATGGAAGGTTCACTGGTCGAGACCCGCTCAATCTTGGAAGCTGGTTCTGTTTTGCCACCT 650
|||||||||||||||||||| |||||||||||| | ||||||||||||||||| ||||||
Sbjct 601 ATGGAAGGTTCACTGGTCGAAACCCGCTCAATCCTAGAAGCTGGTTCTGTTTTACCACCT 660
Query 651 GGCAGAAGAATCCCATCTGGTGAACTCTGGGGAGGCAATCCAGCAAGGTTTATTCGAACA 710
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 661 GGCAGAAGAATCCCATCTGGTGAACTATGGGGAGGCAATCCAGCAAGGTTTATTCGAACA 720
Query 711 CTCACCAATGAAGAAACCTTAGAGATCCCAAAACTCGCTGTTGCCATTAACCACCTAAGT 770
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 721 CTCACCAATGAAGAAACCTTAGAGATCCCGAAACTTGCTGTTGCCATTAACCACCTAAGT 780
Query 771 GGAGATTACTTCTCAGAGTTCTTACCTTACTCAACTATCTATCTAGAGGTTGAGAAGTTC 830
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 781 GGAGATTACTTCTCAGAGTTCTTGCCTTACTCAACTATCTATCTAGAGGTTGAGAAGTTC 840
Query 831 AAGAAATCCCTTGGAATCGCCGTCTAGAAAGCTTTCCTTTTCCAGGTTTCTGGCTACTTC 890
||||||||||||||||||||| |||||||||||| | || |||||||||||||||||||
Sbjct 841 AAGAAATCCCTTGGAATCGCCATCTAGAAAGCTT-C-TT--CCAGGTTTCTGGCTACTTC 896
Query 891 CTTCACTTA-GAAAGCTTCTTCGtttttttGGAATTTGATCTGAATAAGTAGCTG-GAGA 948
| ||| ||| ||||||||||||||||| ||||||||||||||||||||||||| | ||
Sbjct 897 CCTCA-TTAAGAAAGCTTCTTCGTTTTC--GGAATTTGATCTGAATAAGTAGCTGCG-GA 952
Query 949 ACAACAGCAAA-AGCAGAGCTGTGTTTCAAATGTTGTCTTCTCTGTTTGTTTTGTTTAAA 1007
|||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 953 ACAAGAA-AAAGAGCAGAGCTGTGTTTCAAATGTTGTCTTCTCTGTTTGTTTTGTTTAAG 1011
Query 1008 TTCATATCCTTGTGTTCAAACTTTCTATGAAGATGATAATGGTGAAAACTGAAAAGTGAA 1067
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 1012 TTCATATCCTTGTGTTCAAACTTTCTATGAAGATGATAATGGTGAAAACTGGAAAGTGTA 1071
Query 1068 AAACTTCTTTTGTGTCCTCTAACAATTGGAAAAGTTAATAAT 1109
|||||||||| || ||| || ||||||||||||| |||||||
Sbjct 1072 AAACTTCTTTCGTCTCCCCTCACAATTGGAAAAGCTAATAAT 1113
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54367190235
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5