BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485225
Length=1698
Score E
Sequences producing significant alignments: (Bits) Value
AT3G48710.1 | Symbols: | DEK domain-containing chromatin assoc... 2230 0.0
AT5G63550.2 | Symbols: | DEK domain-containing chromatin assoc... 630 1e-179
> AT3G48710.1 | Symbols: | DEK domain-containing chromatin associated
protein | chr3:18040937-18044226 FORWARD LENGTH=1707
Length=1707
Score = 2230 bits (1207), Expect = 0.0
Identities = 1542/1691 (91%), Gaps = 73/1691 (4%)
Strand=Plus/Plus
Query 26 CTTTCTCCTTTATTCACCACTGTTTTAGTCTAGTAGTCGACTCCACATGGCGACTGAAAC 85
||||||||||||||||||||||||| ||| |||| |||| ||||||||||||||||||||
Sbjct 43 CTTTCTCCTTTATTCACCACTGTTTCAGT-TAGTCGTCGTCTCCACATGGCGACTGAAAC 101
Query 86 CCTAGAATTGAAAACACCACAATTAGCAGATACTGTTGCTGTTAGCGagaaggacacaga 145
|||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 102 CCTAGAATTGAAAACACCACAACTAGCAGATACTGTTGCTGTTACCGAGAAGGACACAGA 161
Query 146 gaagaaggaagctccagtaactgaagacacagagaagaagaagaaggatgaagtagcgaa 205
|| |||| ||| || | ||||| | ||||| | || ||| | || |
Sbjct 162 GACGAAG-AAGA---AGGA--TGAAGT-A--GAGAA-A-GA-------TGA-G--GCCAT 200
Query 206 agatgaggccatgaaggagaagggagaagaaaatgatgGAGAAAGAGTTAAATCGCCGGT 265
| |||| | ||| || | |||||||| ||||||||||| |||||||||||||||
Sbjct 201 -G--GAGG--A-GAA--AG--G--AGAAGAAATTGATGGAGAAAAAGTTAAATCGCCGGT 248
Query 266 GACTCCAGTCAGTGAGAGGCCTATAAGGGAGAGAAAGAGGACTGGCCGTTACATTATAGA 325
|||||||||||||||||| |||||||||||||| |||||||||||||||||| |||||||
Sbjct 249 GACTCCAGTCAGTGAGAGACCTATAAGGGAGAGGAAGAGGACTGGCCGTTACGTTATAGA 308
Query 326 CACTCCTTCTCCATCCTCTGTGAACAAGCCTGTGTCAATTG-AGCAGGGTCGTGGAACAC 384
|||||| ||| |||||| | |||||||||| |||||||| | ||||||||||||||||
Sbjct 309 TACTCCTCCTCGATCCTCCGGGAACAAGCCTCTGTCAATTACA-CAGGGTCGTGGAACAC 367
Query 385 GGCTTAGGGAAATTCCAAATGTTGCTTATAAACTGTCCAAGAGAAAACCTGACGACAACC 444
|||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 368 GGCTTAAGGAAATTCCAAATGTTGCTTATAAACTGTCCAAGAGAAAACCTGATGACAACC 427
Query 445 TCTTCTTACTTCACACCATTCTTTACGGCAAAAAGGGAAAGGCACAGATGCTGAAGAAAA 504
|||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||
Sbjct 428 TCTTCTTACTTCACACCATTCTTTACGGCAAAAAAGCAAAGGCACAGATGCTAAAGAAAA 487
Query 505 ACATTGGCCAGTTTTCGGGTTTTGTATGGTCAGAGCAAGAGGAGGAGAAGCAAAGAGCAA 564
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 488 ACATTGGTCAGTTTTCGGGTTTTGTATGGTCAGAGCAAGAGGAGGAGAAGCAAAGAGCAA 547
Query 565 GAGCTAAGGAGAAGCTTGAGAAATGTATCAAAGAAAAGTTGATTGATTTCTGTGATGTGC 624
|||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 548 AAGCTAAAGAGAAGCTTGATAAATGTATCAAAGAAAAGTTGATTGATTTCTGTGATGTGC 607
Query 625 TTGATATACCAATAAACAAAAGTACTGTGAAAAAGGAAGAACTGGCTGTAAGAGTGCTTG 684
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 608 TTGATATACCAGTAAACAAAAGTACTGTGAAAAAGGAAGAACTGGCTGTAAGAGTGCTTG 667
Query 685 AATTTTTGGTATGCCCCAAAGCAACAAGGGATATTCTACTTGCTGATAGTGAAAAGGAAA 744
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 668 AATTTTTGGTATGTCCCAAAGCAACAAGGGATATTCTACTTGCTGATAGTGAAAAGGAAA 727
Query 745 CTAAAAAGCGCAAGAAGAGCACACCGAAGAACGTGACCTCTGGAGAATCATCAGATCTCC 804
||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||
Sbjct 728 CTAAAAAGCGCAAGAAGAGCACATCGAAGAACGTGACCTCTGGAGAATCATCACATGTCC 787
Query 805 CTGCCAAGAGGAGAAGGCAGGCGAAGAATTCTGGAAAGAAACAAGAACAGCCAACTGAGA 864
| || ||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 788 CAGCTAAGAGGAGAAGGCAGGCGAAGAA------A------CAAGAACAGCCAACTGAGA 835
Query 865 CTGAAGGAAACGGTGAGGCTGATGTTGGTTCCGAAGGAACAAATGACTCTCATGGAGAAG 924
|||||||||| |||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 836 CTGAAGGAAATGGTGAGTCTGATGTTGGTTCCGAAGGAACAAATGACTCTAATGGAGAAG 895
Query 925 ATGATGTAGCTCCAGAGGAAGAAAACAACAAAAATGAAGATACCGAAACTGAAGATGAGA 984
||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 896 ATGATGTAGCTCCAGAGGAAGAAAACAACAAAAGTGAAGATACTGAAACTGAAGATGAGA 955
Query 985 AAGATAAAGCCAAGGAGAAGACTAAGTCAACCAATAAGAAAAGCTTGTCAAAAAGGACTA 1044
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 956 AAGATAAAGCCAAGGAGAAGACTAAGTCAACCGATAAGAAACGCTTGTCAAAAAGGACTA 1015
Query 1045 AGAAGGAGAAACCAGCAGCTGAAGAGGAGAAATCTATTAAAGGTTCTGCAAAATCTAGTC 1104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 AGAAGGAGAAACCAGCAGCTGAAGAGGAGAAATCTATTAAAGGTTCTGCAAAATCTAGTC 1075
Query 1105 GAAAGTCCTCCAGACAAATCGATAAATCAACTTCATCATCAAGCAAGAAGCAAAAGGTTG 1164
||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 1076 GAAAGTCCTTCAGACAAGTCGATAAATCAACTACATCATCAAGCAAGAAGCAAAAGGTTG 1135
Query 1165 ATAAAGACGATTCCTCTAAAGAGAAAGGCAAGACACAGACAAGTAAACCACAGGcaaagg 1224
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1136 ATAAAGACGATTCCTCTAAAGAGAAAGGCAAGACACAGACAAGTAAACCACAGGCAAAAG 1195
Query 1225 gatccaaagatcaaggaaaatcccgtaagaaaggtaaaaaagaacccacaaaaaaaGAAC 1284
||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 1196 GATCCAAAGATCAAGGACAATCCCGAAAGAAAGGTAAAAAAGAACCCACAAGAAAAGAAC 1255
Query 1285 TGCATGTGGTGGTGGCCAAAATTCTGAAGGAAGTAGACTTCAATACGGCAACTCTATCTG 1344
||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1256 TGCATGTAGTGGTGACCAAAATTCTGAAGGAAGTAGACTTCAATACGGCAACTCTATCTG 1315
Query 1345 ATATTTTGCGGAAGCTTGGGAGCCATTTTGGAGTTGATCTTATGCATAGAAAAGCAGAGG 1404
||||| | |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1316 ATATTCTACGGAAGCTTGGGAGCCATTTTGGAATTGATCTTATGCATAGAAAAGCAGAGG 1375
Query 1405 TGAAGGATATCATTACAGATGCCATTAACGAAATGAGTGATGATGATGA-GA-ATGG-GG 1461
||||||||||||||||||||||||||||||||||||||||||||||||| || | | ||
Sbjct 1376 TGAAGGATATCATTACAGATGCCATTAACGAAATGAGTGATGATGATGATGAGAAAGAGG 1435
Query 1462 AAAACACAGAGGATGAAGGTGAGAAAGAGAGAAAGGACTAGTTTTATCTTTCTTCTCTTT 1521
|| |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 1436 AAGACACAGAGGATGAAGGTGAGAAAGAGGGAAAGGACTAGTTTTGTCTTTCTTCTCTTT 1495
Query 1522 TCTGCAATAAGAAAAA-A---CATAACCCGAACAGACGGTTTAACTTAACCTTG-ATGTG 1576
|| |||||||||||| | ||||||| ||| |||||||||||||||||||| |||||
Sbjct 1496 CCTACAATAAGAAAAAGAAAACATAACC-GAAGAGACGGTTTAACTTAACCTTCCATGTG 1554
Query 1577 TGAATCGAATCATAGGATTGTTTGTATGTT-GGTGTATTGTGTAATCTGTTAGGCTCATC 1635
|||||| | | | |||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 1555 TGAATC-A-T-A--GGATTGTTTGTATGTTTGGTGTAATGTGTAATCTGTTAGGCTCATG 1609
Query 1636 TAGTATCAGGTTA-GTC-TTG--TA-TTT--GGAT-ACTTTGTGGATTTGAGCTGTATTT 1687
||||||||||| | || ||| || ||| |||| | | | ||||||| |||||||
Sbjct 1610 TAGTATCAGGTAATGTGGTTGGATACTTTCTGGATTAGAAT-TA-ATTTGAGATGTATTT 1667
Query 1688 GTAAGGACTTG 1698
|||||||||||
Sbjct 1668 GTAAGGACTTG 1678
> AT5G63550.2 | Symbols: | DEK domain-containing chromatin associated
protein | chr5:25444672-25448172 FORWARD LENGTH=1967
Length=1967
Score = 630 bits (341), Expect = 1e-179
Identities = 893/1148 (78%), Gaps = 84/1148 (7%)
Strand=Plus/Plus
Query 350 CAAG-CCTGTGTCAATTGAGCAGGGTCGTGGAACACGGCTTAGGGAAATTCCAAATGTTG 408
|||| || || |||||||| ||||||||||||||| || || |||||||||||||| |
Sbjct 499 CAAGTCC-GTTTCAATTGAAAAGGGTCGTGGAACACCTCTCAGAGAAATTCCAAATGTGG 557
Query 409 CTTATAAACTGTCCAAGAGAAAACCTGACGACAACCTCTTCTTACTTCACACCATTCTTT 468
|| ||||||| || ||||||||| |||| |||||||| | ||||| |||||||||||||
Sbjct 558 CTCATAAACTATCGAAGAGAAAAGCTGATGACAACCTGATGTTACTACACACCATTCTTT 617
Query 469 ACGGCAA-AAAGGGAAAGGCACAGATGCTGAAGAAAAACATTGGCCAGTTTTCGGGTTTT 527
|| || ||| | ||||||||||||| | |||| ||||||||| || ||||| || |||
Sbjct 618 TTGGGAAGAAA-GCAAAGGCACAGATGGTTAAGAGAAACATTGGTCAATTTTCTGGCTTT 676
Query 528 GTATGGTCAGAGCAAGAGGAGGAGAAGCAAAGAGCAAGAGCT-AAGGAGAAGCTTGAGAA 586
| ||||||||| |||||||||||||||| |||||| || | || |||||| |||| ||
Sbjct 677 GCCTGGTCAGAGAAAGAGGAGGAGAAGCAGAGAGCACGA-ATAAAAGAGAAGATTGACAA 735
Query 587 ATGTATCAAAGAAAAGTTGATTGATTTCTGTGATGTGCTTGATATACCAATAAACAAAAG 646
||| | |||||||| ||||||| ||| ||||||||||||||||| || |||| || |||
Sbjct 736 ATGCGTAAAAGAAAAATTGATTGTTTTTTGTGATGTGCTTGATATCCCTATAAGCAGAAG 795
Query 647 T-ACTGTGAAAAAGGAAGAACTGGCTGT-AAGAGTGCTTGAATTTTTGGTATGC-CCCAA 703
| || |||||||| |||||||| ||||| || ||||||||||||||||| || | |||||
Sbjct 796 TAAC-GTGAAAAAAGAAGAACTAGCTGTCAA-AGTGCTTGAATTTTTGGAAT-CTCCCAA 852
Query 704 AGCAACAAGGGATATTCTACTTGCTGAT-AGTGAAAAGGAAACTAAAAAGCGCAAGAAGA 762
| ||| || ||| || || |||||||| | |||||| | | ||||||||| ||||
Sbjct 853 GGAAACTAGAGATGTTATAATTGCTGATCA-AGAAAAGCAGGCGAAAAAGCGC---AAGA 908
Query 763 GCACACCGAAGAA-CGTGACCTCTGGAGAATCATCAGATC-TCCCTGCCAAGAGGAGAAG 820
| ||||| || || | || ||||||||||| || || | |||||||||||||| ||
Sbjct 909 GTACACC-AAAAAGGGGGAAATCTGGAGAATCTTCGGA-CACCCCTGCCAAGAGGA-AA- 964
Query 821 GCAGGCGAAGAATTCTGGAAAGAAACAAGAACAGCCAACTGAGAC---TGAAGGAAACGG 877
|||| | || || ||| || | ||| | ||| |||| || ||||| || ||
Sbjct 965 --AGGC--A-AA--CT--AAA-AAGCGAGATCTTCCATCTGACACGGAAGAAGGCAA-GG 1013
Query 878 -TGAGGCTGATGTTGGTTCCGAAGGAACAAATGACT-CTCATGGAGAAGATGATGTAGCT 935
||||| |||| || || |||||||| ||||| | |||||| ||||||||||| |||
Sbjct 1014 ATGAGGGAGATGCTGACTCTGAAGGAACTAATGA-TCCTCATGAAGAAGATGATGCAGCG 1072
Query 936 CCAGAGGAAGAAAACAACAAAAATGAAGATACCGAAACTGAAGATGAGAAAGATAAAGCC 995
||||||||||||| || ||||| | || || ||||| |||||||||||| |||
Sbjct 1073 CCAGAGGAAGAAAGTGAC---CATGAAAAGACTGACACTGACGATGAGAAAGATGAAG-T 1128
Query 996 A-AGG-AGAAGACTAAGTCAACCAATAAGAAAAGCTTGTC-AAAAAGGACT-AAGAAGGA 1051
| ||| | ||| || || |||| |||||||||| || ||||| |||| || ||||
Sbjct 1129 AGAGGTTG-AGA--AA-CCATCCAAGAAGAAAAGCTCATCGAAAAA-GACTGTAG-AGGA 1182
Query 1052 GAAACCA--G--C--AGCTGAA-GAGGAG-AA--ATCTATTAAAGGTTCTGCAAAATCTA 1101
|| || | | || | || || || || ||| ||||||||||||| ||||
Sbjct 1183 GAGTTCAGGGTCCAAAGGT-AAGGATAAGCAACCTTCTGCCAAAGGTTCTGCAAGATCT- 1240
Query 1102 GTCG-AAAGTCCTCCAGACAAATCGATAAATCAACTTCATCATCAAGC-AAGAAGCAAAA 1159
| | ||||||||||| |||||| | ||| ||||||||||| | ||| |||||||||||
Sbjct 1241 GGGGAAAAGTCCTCCAAACAAATTGCTAAGTCAACTTCATC-CCCAGCTAAGAAGCAAAA 1299
Query 1160 GGTTGATAAAGACGATTCCTCTAAAGAGAAAGGCAAGACACAGACAAGTAAACCACAGGc 1219
|||||| | | || || |||||||||||| |||||| |||| | ||||| ||||||||
Sbjct 1300 AGTTGATCACGTTGAGTCTTCTAAAGAGAAAAGCAAGAAACAGCCGAGTAAGCCACAGGC 1359
Query 1220 aaagggatccaaagatcaaggaaaatcc-cgtaagaaaggtaaa---aaag-a-a-ccca 1272
|||||||| ||||| |||||||| || | ||||||||| ||| |||| | | ||||
Sbjct 1360 TAAGGGATCTAAAGAGAAAGGAAAAGCCAC-TAAGAAAGGCAAAGCCAAAGCAGAGCCCA 1418
Query 1273 caaaaaaaGA-ACTGCATGTGGTGGTGGCCAAAATTCTGAAGGAAGTAGACTTCAATACG 1331
| | |||||| | ||| || |||||| ||||||||||||||||||||||||||||||||
Sbjct 1419 CCAGAAAAGAGA-TGCTTGAAGTGGTGTCCAAAATTCTGAAGGAAGTAGACTTCAATACG 1477
Query 1332 GCAACTCTATCTGATATTTTGCGGAAGCTTGG-GAGCCATTTTGGAGTTGATCT-TATGC 1389
||||| ||||| |||||| ||| |||||| | || ||||||||| || || || | ||
Sbjct 1478 GCAACACTATCAGATATTCTGCAGAAGCTAAGTGA-CCATTTTGGTGTCGAGCTGTC-GC 1535
Query 1390 ATAGAAAAGCAGAGGTGAAGGATATCATTACAGATGCCATTAACGAAATGAGTGATGATG 1449
|||||||| |||||||||||||| | || ||||| ||||| || | ||||| ||||||||
Sbjct 1536 ATAGAAAACCAGAGGTGAAGGATGTTATCACAGAGGCCATAAATGCAATGACTGATGATG 1595
Query 1450 ATGA-GAA 1456
| || |||
Sbjct 1596 AAGAAGAA 1603
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83935311240
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5