BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485226
Length=1615
Score E
Sequences producing significant alignments: (Bits) Value
AT3G48720.1 | Symbols: | HXXXD-type acyl-transferase family pr... 2331 0.0
> AT3G48720.1 | Symbols: | HXXXD-type acyl-transferase family
protein | chr3:18046323-18049463 FORWARD LENGTH=1665
Length=1665
Score = 2331 bits (1262), Expect = 0.0
Identities = 1525/1646 (93%), Gaps = 42/1646 (3%)
Strand=Plus/Plus
Query 1 TACCTTATCTCTCCAGCTATACACTTGCTACTCAAGATACCACTAACCCTAATCTCCACT 60
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 31 TACCTTATCTCTCCAGCTATACACTTGCTACTCAAGATACCGCTAACCCTAATCTCTACT 90
Query 61 AGACCCCCTTTAATTAGAAGTTAAAACCCTATATATCAAGATCGATTCTCTG-TTTCTCA 119
|||||||| |||| | |||||||||||||||||||| || | |||||| ||||||
Sbjct 91 AGACCCCC-----TTAGGACTTAAAACCCTATATATCAAGGTCTACTCTCTGTTTTCTCG 145
Query 120 CTTTCTTCATTCCAGCCATTCCACAAGTTTTTCGATTTCTTTCATTGAAAA-CACTTGAA 178
||||||| |||| |||||||||| | ||||||||||||||||||||||||| || |||||
Sbjct 146 CTTTCTTTATTCGAGCCATTCCATACGTTTTTCGATTTCTTTCATTGAAAACCA-TTGAA 204
Query 179 ATGGTGGCCTCATTTGAGATCTTCGTCACAAGGAAAAACCCTGAACTCATCCCTCCTGTG 238
||||| ||||||| |||| || |||||||||||||||||||||||||||||||||| |||
Sbjct 205 ATGGTCGCCTCATCTGAGTTCATCGTCACAAGGAAAAACCCTGAACTCATCCCTCCCGTG 264
Query 239 TCCGAAACTCCAAAGGGTCATTACTATCTCTCGAATCTCGATCAAAACATCGCCATCATC 298
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 265 TCCGAAACTCCGAATGGTCATTACTATCTCTCGAATCTCGATCAAAACATCGCCATCATC 324
Query 299 GTGAAAACATTATATTACTACAAATCGGAGTCAAGAACCAACCAAGAATCCTACAATGTG 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 325 GTGAAAACATTATATTACTACAAATCGGAGTCAAGAACCAACCAAGAATCCTACAATGTG 384
Query 359 ATAAAGAAATCTCTCTCTGAGGTTCTTGTTCATTACTACCCTGTCGCCGGAAGGCTGACG 418
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 385 ATCAAGAAATCTCTCTCAGAGGTTCTTGTTCATTACTACCCTGTCGCCGGAAGGCTGACG 444
Query 419 ATCAGTCCGGAAGGAAAGATCGCCGTGAATTGCACAGGAGAAGGAGTAGTGGTTGTGGAA 478
|||||||||||||| ||||||||||| |||||||| |||||||| |||||||||||||||
Sbjct 445 ATCAGTCCGGAAGGGAAGATCGCCGTCAATTGCACCGGAGAAGGTGTAGTGGTTGTGGAA 504
Query 479 GCTGAGGCTAACTGTGGGATAGAGACGATCAAAGAGGCCATCTCTGTGAATAGAATGGAG 538
||||||||||||||||||||||| |||||||||||||||||||| | |||||||||||||
Sbjct 505 GCTGAGGCTAACTGTGGGATAGATACGATCAAAGAGGCCATCTCAGAGAATAGAATGGAG 564
Query 539 ACGCTCGAGAAACTTGTTTACGACGTTCCAGGTGCCCGGAATATTCTTGAGATTCCGCCG 598
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 565 ACGCTCGAGAAACTTGTTTACGACGTTCCAGGTGCCCGGAATATTCTTGAGATTCCACCG 624
Query 599 GTAGTAGCTCAGGTGACAAATTTCAAATGTGGGGGTTTTGTCCTAGGACTAGGCATGAGC 658
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 625 GTAGTAGTTCAGGTGACAAATTTCAAATGTGGGGGTTTTGTCCTAGGACTAGGCATGAGC 684
Query 659 CACAACATGTTCGATGGAGTCGCCGCTGCGGAGTTCCTCAACTCGTGGTGCGAGATGGCT 718
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 685 CACAACATGTTCGATGGAGTCGCCGCTGCGGAGTTCCTCAACTCGTGGTGCGAGATGGCC 744
Query 719 AAGGGCCTTCCTTTATCCGTCCCGCCTTTCTTGGACCGTACGATTCTCCGGCCACGAAAC 778
||||| ||||||||||||||||| || |||||||||||||||||||||||| ||||||||
Sbjct 745 AAGGGTCTTCCTTTATCCGTCCCACCATTCTTGGACCGTACGATTCTCCGGTCACGAAAC 804
Query 779 CCTCCCAAAATCGAGTTCCCACACAACGAATTCGACGAAATTGAAGACATCTCCGACACC 838
|||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||
Sbjct 805 CCTCCCAAAATCGAGTTCCCACACAATGAATTCGACGAAATTGAAGATATTTCCGACACC 864
Query 839 CGAAAACTCTACGATGAAGAAAAACTCGTCTACAAATCATTCCTCTTCGAACCCGAAAAG 898
||||| |||||||||||||||||||| ||||||||||||| || |||||||||||||||
Sbjct 865 GGAAAAATCTACGATGAAGAAAAACTCATCTACAAATCATTTCTTTTCGAACCCGAAAAG 924
Query 899 CTTGAGAAGCTCAAGACCATGGC-AGTTGAAGAAAGTAATAATAGTAAGGTATCAACATT 957
|||||||||||||||| |||||| | ||||||||| ||| |||| |||||||||||||||
Sbjct 925 CTTGAGAAGCTCAAGATCATGGCGA-TTGAAGAAAATAACAATAATAAGGTATCAACATT 983
Query 958 TCAAGCCTTAACCGGGTTTCTTTGGAAATCAAGATGTGAGGCTCTACGGTATAAACCAGA 1017
|||||||||||||||||||||||||||||||||||| || |||||||||| |||||| ||
Sbjct 984 TCAAGCCTTAACCGGGTTTCTTTGGAAATCAAGATGCGAAGCTCTACGGTTTAAACCGGA 1043
Query 1018 CCAACGGGTTAAACTTCTGTTCGCGGCTGATGGACGGTCTAGATTCATCCCACGTCTCCC 1077
|||||||||||| |||||||| ||||| ||||||||||| ||||||||||||||||||||
Sbjct 1044 CCAACGGGTTAAGCTTCTGTTTGCGGCGGATGGACGGTCAAGATTCATCCCACGTCTCCC 1103
Query 1078 ACAAGGATATTGCGGGAACGGGATTGTGTTAACCGGTTTGGTGACATCATCAGGAGAATT 1137
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1104 GCAAGGATATTGCGGGAACGGGATTGTGTTAACCGGTTTGGTGACATCATCGGGAGAATT 1163
Query 1138 AGTTGGGAACCCTCTTTCTCACTCGGTGGGTTTGGTCAAGAGACTGGTCGAGTTGGTTAC 1197
|||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 1164 AGTTGGGAACCCTCTTTCTCACTCGGTGGGTTTGGTCAAGAGACTGGTGGAGCTGGTTAC 1223
Query 1198 AGACGGTTTCATGAGGTCGGCTATGGATTACGTCGAGGTGAACCGGACCCGGCCGAGTAT 1257
||||| |||||| ||||||||||||| ||| |||||||||||||||| |||||||||||
Sbjct 1224 GGACGGCTTCATGCGGTCGGCTATGGACTACTTCGAGGTGAACCGGACACGGCCGAGTAT 1283
Query 1258 GAATGCGACGCTTTTGATTACATCCTGGTCAAAATTGACATTGCATAAACTGGATTTCGG 1317
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1284 GAACGCGACACTTTTGATTACATCCTGGTCAAAATTGACATTGCATAAACTGGATTTCGG 1343
Query 1318 TTGGGGAGAACCGGTTTTCTCTGGACCGGTTGGTTTACCAGGGAGGGAAGTGATTTTGTT 1377
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1344 TTGGGGAGAACCGGTTTTCTCTGGACCGGTTGGTTTACCAGGGAGGGAAGTGATCTTGTT 1403
Query 1378 CTTACCAAGTGGAAATGACATGAAGAGTATCAATGTGTTTCTTGGCCTTCCTGCTTCAGC 1437
|||||||||||| |||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 1404 CTTACCAAGTGGTGATGATATGAAGAGTATCAATGTGTTTCTTGGCCTTCCTACTTCAGC 1463
Query 1438 TATGGAAGTGTTTGAAGAGCTTATGAAGAAGATCTGAAAAAGAACATACATTTTCATAAT 1497
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1464 TATGGAAGTGTTTGAAGAGCTTATGAAGA---TCTGAAAAAGAACATACATTTTCATAAT 1520
Query 1498 CAAATTATGATTTATT-T------T-ATAATC---------T-A-A-TC-A-T--T-ATT 1532
||||||||||| |||| | | |||| | | | | || | | | |||
Sbjct 1521 CAAATTATGATATATTCTACCAAATTATAAGCAAAGGAAAATTATAATCTAGTCATTATT 1580
Query 1533 TATACATGT-A-AGTTTGAATTCTCGTTTGTATCAATTACAAAAAATTATGTAATTCGCA 1590
||||||||| | | ||||||||| |||||||||| |||||||||| ||||||||||||||
Sbjct 1581 TATACATGTTATA-TTTGAATTCACGTTTGTATCCATTACAAAAATTTATGTAATTCGCA 1639
Query 1591 TAAAA-ATATATATGTCAAAGTAAGT 1615
|||| |||||||||||||| |||||
Sbjct 1640 GAAAATATATATATGTCAAATTAAGT 1665
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79768666005
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5