BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485229
Length=1262
Score E
Sequences producing significant alignments: (Bits) Value
AT3G48750.1 | Symbols: CDKA;1, CDC2AAT, CDK2, CDC2, CDC2A, CDKA... 1701 0.0
> AT3G48750.1 | Symbols: CDKA;1, CDC2AAT, CDK2, CDC2, CDC2A, CDKA1
| cell division control 2 | chr3:18071536-18074641 FORWARD
LENGTH=1417
Length=1417
Score = 1701 bits (921), Expect = 0.0
Identities = 1064/1127 (94%), Gaps = 33/1127 (3%)
Strand=Plus/Plus
Query 1 CCTTCCCTAGTCCTCCTCTCTTCAAGCTTTTCACAG--AA--ACCACCCTTCTCTCTCTA 56
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1 CCTTCCCTAGTCCTCCTCTCTTCAAGCTTTTCACAGAAAACCACCACCCTTCTCTCTCTA 60
Query 57 CTGCC-TTTTACCACTgagaagagagagagagagagGATCCGTCGGTGTGTACTAATCTC 115
||||| ||||||||| ||||| |||||||||||||||||||||| ||| ||||
Sbjct 61 CTGCCTTTTTACCAC-------AGAGA-AGAGAGAGGATCCGTCGGTGTG--CTAGTCTC 110
Query 116 ACTGACACTACATCCGATCGTCGCCGGTGACATTTTACAAGTGTGGAG-----TT--GC- 167
||||||||||||||||||||||||||||||||||||| |||||||||| || ||
Sbjct 111 ACTGACACTACATCCGATCGTCGCCGGTGACATTTTATAAGTGTGGAGTTTACTTCAGCT 170
Query 168 ----T-TT-----ATTGATGGATCAGTACGAGAAAGTTGAGAAGATTGGTGAAGGAACTT 217
| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 171 TTATTATTCAGGAATTGATGGATCAGTACGAGAAAGTTGAGAAGATTGGTGAAGGAACTT 230
Query 218 ACGGTGTGGTTTATAAGGCACGAGACAAAGTCACTAATGAGACAATAGCTTTGAAGAAGA 277
|||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||
Sbjct 231 ACGGTGTGGTTTATAAGGCACGTGACAAAGTGACTAATGAGACAATTGCTTTGAAGAAGA 290
Query 278 TCCGGCTGGAGCAGGAGGATGAAGGTGTACCTAGTACAGCCATTAGAGAAATCTCCCTCT 337
|| |||| |||||||||||||||||||| ||||| ||||| || ||||||||||||||||
Sbjct 291 TCAGGCTAGAGCAGGAGGATGAAGGTGTTCCTAGCACAGCAATCAGAGAAATCTCCCTCT 350
Query 338 TGAAAGAAATGCAGCACAGTAACATTGTCAAATTGCAGGATGTGGTGCACAGCGAGAAAC 397
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 351 TGAAAGAAATGCAGCACAGCAACATTGTCAAATTGCAGGATGTGGTGCACAGCGAGAAAC 410
Query 398 GTTTGTATCTGGTATTTGAGTATCTTGACTTGGATCTCAAAAAGCACATGGATTCAACTC 457
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 411 GTTTGTATCTGGTTTTTGAGTATCTTGACTTGGATCTCAAAAAGCACATGGATTCTACTC 470
Query 458 CTGATTTCTCTAAGGATCTACATATGATCAAAACATATCTTTACCAGATTCTCCGTGGAA 517
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 471 CTGATTTCTCCAAGGATCTACATATGATCAAAACATATCTTTACCAGATTCTCCGTGGAA 530
Query 518 TTGCGTATTGCCACTCTCACAGGGTTCTCCATCGTGATTTAAAGCCACAGAATTTGTTGA 577
||||||||||||||||||| |||||||||||||||||| | |||||||||||||||||||
Sbjct 531 TTGCGTATTGCCACTCTCATAGGGTTCTCCATCGTGATCTGAAGCCACAGAATTTGTTGA 590
Query 578 TTGATCGCCGCACAAACTCACTAAAGCTTGCAGATTTTGGACTGGCCAGAGCATTCGGTA 637
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 591 TTGATCGCCGCACAAACTCACTGAAGCTTGCTGATTTTGGACTGGCCAGAGCATTCGGTA 650
Query 638 TCCCTGTCAGGACATTTACTCATGAGGTGGTTACTCTCTGGTACCGAGCACCAGAGATAC 697
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 651 TCCCTGTCAGGACATTTACTCATGAGGTTGTTACTCTCTGGTACCGAGCACCAGAGATAC 710
Query 698 TCCTAGGATCTCATCATTACTCTACACCTGTTGATATTTGGTCTGTGGGATGCATATTTG 757
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 711 TCCTAGGATCTCATCATTACTCTACACCTGTTGATATTTGGTCTGTGGGGTGCATATTTG 770
Query 758 CTGAGATGATCAGCCAAAAGCCCTTATTTCCTGGAGACTCTGAGATTGATCAACTCTTCA 817
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 771 CTGAGATGATCAGCCAAAAGCCCTTATTTCCTGGAGACTCCGAGATTGATCAACTCTTCA 830
Query 818 AGATTTTCAGAATCATGGGAACTCCGTACGAGGATACATGGCGTGGGGTAACTTCGCTGC 877
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 831 AGATTTTCAGAATCATGGGAACTCCGTACGAGGATACATGGCGTGGGGTAACTTCTCTAC 890
Query 878 CGGATTATAAATCTGCTTTCCCTAAATGGAAACCAACGGACCTAGAAAGTTTTGTCCCCA 937
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 891 CGGATTATAAATCTGCTTTCCCTAAATGGAAACCAACGGACCTAGAAACTTTTGTCCCCA 950
Query 938 ATCTAGATCCCGATGGAGTAGATCTCCTTTCTAAAATGCTGTTAATGGATCCGACCAAAA 997
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 951 ATCTAGATCCCGATGGAGTCGATCTCCTTTCTAAAATGCTGTTAATGGATCCGACCAAAA 1010
Query 998 GAATCAACGCAAGAGCTGCCCTGGAGCATGAATACTTCAAGGATCTTGGCGTCATGCCTT 1057
|||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||
Sbjct 1011 GAATCAACGCAAGAGCCGCCCTGGAGCATGAATACTTCAAGGATCTTGGAGGCATGCCTT 1070
Query 1058 AGAAAGGCATAAAACCAGTAATCTCCTTCATTCTATATATAATTATC 1104
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1071 AGAAAGGCATAAAACCAGTAATCTCCTTCATTCTATATATAATTATC 1117
Score = 193 bits (104), Expect = 4e-48
Identities = 118/124 (95%), Gaps = 3/124 (2%)
Strand=Plus/Plus
Query 1141 aaaaaaa-aaaGAAGAAGATTTCGAGTGTGtttttttttACTTCTAAGCTTTTGAGATCA 1199
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 AAAAAAAGAAAGAAGAAGATTTCGAGTGTGTTTTTTTTTACTTCTAAGCTTTTGAGATCA 1260
Query 1200 GTTTCTTGTATCTTCTTTTACGCAGAATATTA-TATTCCCCTATATGAAATATGGTTTTT 1258
|||||||||||||| |||||| |||||||| | |||| ||||||||||||||||||||||
Sbjct 1261 GTTTCTTGTATCTTATTTTACCCAGAATAT-AGTATTTCCCTATATGAAATATGGTTTTT 1319
Query 1259 GTTT 1262
||||
Sbjct 1320 GTTT 1323
Score = 62.1 bits (33), Expect = 1e-08
Identities = 35/36 (97%), Gaps = 0/36 (0%)
Strand=Plus/Plus
Query 1105 GAACAACAATATTAATGGGTTTTGTTTATTCTTTTT 1140
||| ||||||||||||||||||||||||||||||||
Sbjct 1132 GAAGAACAATATTAATGGGTTTTGTTTATTCTTTTT 1167
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62047873620
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5