BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485233
Length=1026
Score E
Sequences producing significant alignments: (Bits) Value
AT3G48790.1 | Symbols: | Pyridoxal phosphate (PLP)-dependent t... 665 0.0
AT3G48780.1 | Symbols: ATSPT1, SPT1 | serine palmitoyltransfera... 632 2e-180
AT5G23670.1 | Symbols: LCB2 | long chain base2 | chr5:7981641-7... 477 9e-134
> AT3G48790.1 | Symbols: | Pyridoxal phosphate (PLP)-dependent
transferases superfamily protein | chr3:18093404-18095181 FORWARD
LENGTH=1053
Length=1053
Score = 665 bits (360), Expect = 0.0
Identities = 566/663 (85%), Gaps = 23/663 (3%)
Strand=Plus/Plus
Query 1 ACTACATCTGTCCATGAAGAACTCGAGGAATGTGTTGCTAAATTTGTGGGACAGCCTGCT 60
|||||| |||| |||| |||||| ||||||||||||||||||||||||||| | ||||||
Sbjct 22 ACTACAGCTGTGCATGGAGAACTTGAGGAATGTGTTGCTAAATTTGTGGGAAAACCTGCT 81
Query 61 GCTGTTGTTTTTGGCATGGGCTACCTAACAAACTCGGCTATCATTCCTGTCTTGATTGGA 120
|||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 82 GCTGTTGTTTTTGGCATGGGCTACTTAACAAACTCGGCTATCATTTCTGTCTTGATTGGC 141
Query 121 AAGTTACAATT-AT-CT-ATTCA-TCAGTAT-AAAAAGA-TTaaaaaaaaTCAAATAATT 174
||| | || || | | | | || | | || | | || || ||| ||| |
Sbjct 142 AAGGGAGGGTTGATAATAAGTGATTC--TTTGAACCATACTT--CAATTATC-AAT-GGT 195
Query 175 AACCCGCGGTGTACCGCGGGTCA-TATCCTAGTTAATCCAATA-AA-AGTTTTGAAAGAA 231
| || ||| | | | | | || ||||| ||| ||||| | || | | |||||||||
Sbjct 196 -GCTCGAGGT-T-CAG-GAGCCACTATCCGCGTT-TTCCAACACAACA-TATTGAAAGAA 249
Query 232 CAAATCGCTGAGGGACAACCAAGGACACACAGACTGTGGAAGAAAATCATCGTTGTTGTT 291
|| ||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 250 CATATCATTGAGGGACAACCAAGGACACACAGACCGTGGAAGAAAATTATCGTTGTTGTT 309
Query 292 GAAGGTATTTACAGCATGGAAGGGGAAATCTGTCATCTGCCGGAGATTGTCTCAATATGC 351
||||||||||| ||||||||||||||||||||| |||| ||||||||||| ||| |||||
Sbjct 310 GAAGGTATTTATAGCATGGAAGGGGAAATCTGTGATCTACCGGAGATTGTTTCAGTATGC 369
Query 352 AAG-AAGTATAAGGCATATGTTTACTTGGATGAAGCTCACAGCATTGGAGCAATTGGCAA 410
|| ||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||
Sbjct 370 -AGTGAGTATAAGGCATATGTTTATTTGGACGAAGCTCATAGCATTGGAGCAATTGGCAA 428
Query 411 GACAGGAAGAGGTGTTTGTGAACTCCTGGGGGTTGACACTTGTGATGTGGACATAATGAT 470
|||||| ||||||||||||||||||| || ||||||||| ||| |||||||| |||||
Sbjct 429 AACAGGACGAGGTGTTTGTGAACTCCTAGGAGTTGACACTACTGAAGTGGACATTATGAT 488
Query 471 GGGAACTTTCACGAAATCTTTCGGGTCTTGTGGTGGCTATATTGCCGGATCCAAGGACCT 530
||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 489 GGGCACTTTCACGAAATCTCTCGGGTCTTGTGGTGGCTACATTGCCGGATCCAAGGACCT 548
Query 531 CATCCAATATTTGAAGTACCATTGCCCTGCTCACCTTTACGCAACATCAATTTCAACTCC 590
|||||||||||||| | |||| ||||||||||||||||||||||||||||||||||||
Sbjct 549 TGTCCAATATTTGAAGCAACATTACCCTGCTCACCTTTACGCAACATCAATTTCAACTCC 608
Query 591 TGCTGCACAACAAGTCATATCGGTTATAAAAGTTATCCTTGGAGAGGATGCTTCAAACAG 650
||||||||||||||||||||||| |||||||| ||| |||||| ||| | |||||||||
Sbjct 609 TGCTGCACAACAAGTCATATCGGCCATAAAAGTCATCTTTGGAGTGGACGGTTCAAACAG 668
Query 651 AGG 653
|||
Sbjct 669 AGG 671
Score = 427 bits (231), Expect = 9e-119
Identities = 270/288 (94%), Gaps = 6/288 (2%)
Strand=Plus/Plus
Query 741 TCATGCCAATAATGCTTTACAATCCAGC-AAAATCGCAGCCTTCTCAAGGGCATGGTTGC 799
|||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||
Sbjct 770 TCATGCCAATAATGCTTTACAATCCAGCAAAAATCGCAGCCTTCTCAAGGGAATGTTTGC 829
Query 800 AAGAAAACTTGGCAGTCGTGGTAGTCAGTTTCCCAGCTATACCTCTATTGCTAGCCAGGG 859
||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 830 GAGAAAACTTGGCAATCGTGGTAGTCAGTTTCCCACCTATACCTCTATTGCTAGCCAGGG 889
Query 860 CTCGTTTTTGC-ATATCCGTATCTCACTTGAGAGAAGATCTTATTAAAGCCCTGAAGGTT 918
||||| ||||| || |||| ||||||||| |||||||||||||||||||||||| |||||
Sbjct 890 CTCGTATTTGCAAT-TCCGCATCTCACTTAAGAGAAGATCTTATTAAAGCCCTGCAGGTT 948
Query 919 ATAAGCAGAGTAGGTGACCTTACAGGGATCATATATTTTACGGCAGCTCCAAAGAAGCAA 978
|||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 949 ATAAGCAGAGCAGGTGACCTTACCGGGATCAAATATTTTACGGCAGCTCCAAAGAAGCAA 1008
Query 979 GAAGACGAGAAAAATGGCAATACTTCAAAGTTCAAACTAAGAATATAG 1026
| | | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1009 G-A-A-GAGAAAAATGGCAATACTTCAAAGTTCAAACTAAGAATATAG 1053
> AT3G48780.1 | Symbols: ATSPT1, SPT1 | serine palmitoyltransferase
1 | chr3:18089061-18093088 FORWARD LENGTH=2420
Length=2420
Score = 632 bits (342), Expect = 2e-180
Identities = 407/439 (93%), Gaps = 2/439 (0%)
Strand=Plus/Plus
Query 216 AAAAGTTTTGAAAGAACAAATCGCTGAGGGACAACCAAGGACACACAGACTGTGGAAGAA 275
|||||| ||||||||||||||||| ||||||||||| ||||| || |||| |||||||||
Sbjct 948 AAAAGTATTGAAAGAACAAATCGCCGAGGGACAACCCAGGACGCATAGACCGTGGAAGAA 1007
Query 276 AATCATCGTTGTTGTTGAAGGTATTTACAGCATGGAAGGGGAAATCTGTCATCTGCCGGA 335
||| || ||||||||||| |||||||||||||||||||||||||| ||||||||||| ||
Sbjct 1008 AATTATTGTTGTTGTTGAGGGTATTTACAGCATGGAAGGGGAAATTTGTCATCTGCCCGA 1067
Query 336 GATTGTCTCAATATGCAAGAAGTATAAGGCATATGTTTACTTGGATGAAGCTCACAGCAT 395
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1068 GATTGTTTCAATATGCAAGAAGTATAAGGCATATGTTTACTTGGACGAAGCTCACAGCAT 1127
Query 396 TGGAGCAATTGGCAAGACAGGAAGAGGTGTTTGTGAACTCCTGGGGGTTGACACTTGTGA 455
|||||||||||||||||||||||||||||||||||||||||| || |||||||||| |||
Sbjct 1128 TGGAGCAATTGGCAAGACAGGAAGAGGTGTTTGTGAACTCCTTGGAGTTGACACTTCTGA 1187
Query 456 TGTGGACATAATGATGGGAACTTTCACGAAATCTTTCGGGTCTTGTGGTGGCTATATTGC 515
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1188 TGTGGACATAATGATGGGAACTTTCACGAAATCTTTTGGGTCTTGTGGTGGCTATATTGC 1247
Query 516 CGGATCCAAGGACCTCATCCAATATTTGAAGTACCATTGCCCTGCTCACCTTTACGCAAC 575
||||| |||||||||||||||||||||||| |||| ||||| |||||||||||||| ||
Sbjct 1248 GGGATCAAAGGACCTCATCCAATATTTGAAGCACCAATGCCCGGCTCACCTTTACGCCAC 1307
Query 576 ATCAATTTCAACTCCTGCTGC-ACAACAAGTCATATCGGTTATAAAAGTTATCCTTGGAG 634
|||||||||||||||| | || ||| ||| ||||||||| ||||| |||||||||||||
Sbjct 1308 ATCAATTTCAACTCCTTCCGCGACA-CAAATCATATCGGCGATAAAGGTTATCCTTGGAG 1366
Query 635 AGGATGCTTCAAACAGAGG 653
|||||| ||||||||||||
Sbjct 1367 AGGATGGTTCAAACAGAGG 1385
Score = 322 bits (174), Expect = 4e-87
Identities = 234/262 (89%), Gaps = 7/262 (3%)
Strand=Plus/Plus
Query 740 GTCATGCCAATAATGCTTTACAATCCAGC-AAAA-TCGCAGCCTTCTCAAGGGCATGGTT 797
||||||||||||||||||||||||||||| |||| || |||| |||||||||| ||| ||
Sbjct 1483 GTCATGCCAATAATGCTTTACAATCCAGCAAAAATTC-CAGCATTCTCAAGGGAATGTTT 1541
Query 798 GCAAGAAAACTTGGCAGTCGTGGTAGTCAGTTTCCCAGCTATACCTCTATTGCTAGCCAG 857
|| |||||||||||| || ||||| ||| |||||||||||| ||| ||||||||||||||
Sbjct 1542 GCGAGAAAACTTGGCGGTGGTGGTCGTCGGTTTCCCAGCTACACCCCTATTGCTAGCCAG 1601
Query 858 GGCTCGTTTTTGCATATCCGTATCTCACTTGAGAGAAGATCTTATTAAAGCCCTGA-AGG 916
||||||| |||||||||||| |||||||| |||||||||||||| |||||||| | |||
Sbjct 1602 GGCTCGTATTTGCATATCCGCATCTCACTCAAGAGAAGATCTTATAAAAGCCCT-ACAGG 1660
Query 917 TTATAAGCAGAGTAGGTGACCTTACAGGGATCATATATTTTACGGCAGCTCCAAAGAAGC 976
||||||||| || |||||||||||| ||||||| ||||||| ||||||||||||| ||||
Sbjct 1661 TTATAAGCAAAGCAGGTGACCTTACCGGGATCAAATATTTTCCGGCAGCTCCAAAAAAGC 1720
Query 977 AAGAAG-ACGAGAAAAATGGCA 997
|||||| | |||||||||||||
Sbjct 1721 AAGAAGTA-GAGAAAAATGGCA 1741
> AT5G23670.1 | Symbols: LCB2 | long chain base2 | chr5:7981641-7985391
FORWARD LENGTH=2072
Length=2072
Score = 477 bits (258), Expect = 9e-134
Identities = 376/433 (87%), Gaps = 8/433 (2%)
Strand=Plus/Plus
Query 219 AGTTTTGAAAGAACAAATCGCTGAGGGACAACCAAGGACACA-CAGACTGTGGAAGAAAA 277
|||||||| ||||||||| || || || ||||| |||||||| | ||| ||||||||||
Sbjct 914 AGTTTTGAGAGAACAAATTGCAGAAGGTCAACCTAGGACACATC-GACCATGGAAGAAAA 972
Query 278 TCATCGTTGTTGTTGAAGGTATTTACAGCATGGAAGGGGAAATCTGTCATCTGCCGGA-G 336
| || ||||||||||||||||||||||||||||||||||| || |||||||| ||||| |
Sbjct 973 TTATTGTTGTTGTTGAAGGTATTTACAGCATGGAAGGGGAGATTTGTCATCTACCGGAAG 1032
Query 337 ATTGTCTCAATATGCAAGAAGTATAAGGCATATGTTTACTTGGATGAAGCTCACAGCATT 396
|||| | ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1033 -TTGTGGCCATATGCAAGAAGTATAAGGCATATGTTTATTTGGATGAAGCTCACAGCATT 1091
Query 397 GGAGCAATTGGCAAGACAGGAAGAGG-TGTTTGTGAACTCCTGGGGGTTGACACTTG-TG 454
|| |||||||| || ||||||| ||| | |||||||||||||||| |||||||| | ||
Sbjct 1092 GGGGCAATTGGTAAAACAGGAA-AGGGTATTTGTGAACTCCTGGGAGTTGACACA-GCTG 1149
Query 455 ATGTGGACATAATGATGGGAACTTTCACGAAATCTTTCGGGTCTTGTGGTGGCTATATTG 514
|||||||| ||||||||||||| ||||| |||||||| ||||||||||||||||||||||
Sbjct 1150 ATGTGGACGTAATGATGGGAACCTTCACAAAATCTTTTGGGTCTTGTGGTGGCTATATTG 1209
Query 515 CCGGATCCAAGGACCTCATCCAATATTTGAAGTACCATTGCCCTGCTCACCTTTACGCAA 574
| ||||| ||||| |||||||||||||||||| | || ||||| ||||| ||||||||||
Sbjct 1210 CTGGATCTAAGGAGCTCATCCAATATTTGAAGCATCAATGCCCAGCTCATCTTTACGCAA 1269
Query 575 CATCAATTTCAACTCCTGCTGCACAACAAGTCATATCGGTTATAAAAGTTATCCTTGGAG 634
|||| || |||||||| | ||||||||| | ||||| | || |||||||| || ||||
Sbjct 1270 CATCCATACCAACTCCTTCCGCACAACAAATTATATCTGCCATTAAAGTTATTCTGGGAG 1329
Query 635 AGGATGCTTCAAA 647
|||||| ||||||
Sbjct 1330 AGGATGGTTCAAA 1342
Score = 156 bits (84), Expect = 5e-37
Identities = 111/124 (90%), Gaps = 2/124 (2%)
Strand=Plus/Plus
Query 1 ACTACATCTGTCCATGAAGAACTCGAGGAATGTGTTGCTAAATTTGTGGGACAGCCTGCT 60
|||||||| || |||| |||||| |||||||||||| ||| ||||||||| ||||||||
Sbjct 678 ACTACATCCGTGCATGCAGAACTTGAGGAATGTGTTACTAGGTTTGTGGGAAAGCCTGCT 737
Query 61 GCTGTTGTTTTTGGCATGGGCTAC-CTAACAAACTCGGCTATCATTCCTGTCTTGATTGG 119
||||||||||||||||||||||| | |||||| |||||||||||||| |||||||||||
Sbjct 738 GCTGTTGTTTTTGGCATGGGCTATGC-AACAAATTCGGCTATCATTCCAGTCTTGATTGG 796
Query 120 AAAG 123
||||
Sbjct 797 AAAG 800
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50284381147
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5