BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485234
Length=842
Score E
Sequences producing significant alignments: (Bits) Value
AT3G48800.1 | Symbols: | Sterile alpha motif (SAM) domain-cont... 1290 0.0
AT5G23680.1 | Symbols: | Sterile alpha motif (SAM) domain-cont... 289 4e-77
> AT3G48800.1 | Symbols: | Sterile alpha motif (SAM) domain-containing
protein | chr3:18095825-18096661 REVERSE LENGTH=837
Length=837
Score = 1290 bits (698), Expect = 0.0
Identities = 802/849 (94%), Gaps = 20/849 (2%)
Strand=Plus/Plus
Query 1 ATGGCGGAGTTGCAACCAGTGGATGGTCAGCAAACAAACGGCGGCGTTATTCCTACTCCG 60
|||||||| ||||||||||||||||||||||||||||||||||||||| || ||| |||
Sbjct 1 ATGGCGGAATTGCAACCAGTGGATGGTCAGCAAACAAACGGCGGCGTTGTTACTATTCCT 60
Query 61 GCGTCAACTTCAGCCGAAGCGACGGCGATTACACCCGCGGGATCGAAACGATTGAGAAGA 120
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 61 GCGTCAACTTCAGCCGAAGCGACGGCGATTGCAGCCGCGGGATCGAAACGATTGAGAAGA 120
Query 121 CCTAGTGTTCGATTAGGCGAAATCGGCGGAGACCAGTA-C--CAGCAGCATCATCACCA- 176
|| || ||| |||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 121 CCAAGCGTTAGATTAGGCGAAATCGGCGGAGACCAGTACCAGCAGCAGCATCATCACCAC 180
Query 177 -C-GCGGCGGCGGCGTATGATTCACAA-GGACGGAAATCGAAATGGACACCGACGACGAC 233
| |||||||||||||||||||||||| ||| ||||||||||||||||| | |||||||
Sbjct 181 GCGGCGGCGGCGGCGTATGATTCACAAGGGA-GGAAATCGAAATGGACA-C--CGACGAC 236
Query 234 GACGAGTGGTAATAGAAAAGATATGAGTAAATCGTCGAGGACTCGAACCCTAACGAATTT 293
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 237 GACGAGTGGTAATAGAAAAGATACGAGTAAATCGTCGAGGACTCGAACCCTAACGAATTT 296
Query 294 GAGTTCTGGGTATGAGAATATCGGAACCCTAGATGATGAAAGAGAAGCAAATGTGGATTC 353
||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 297 GAGTTCTGGGTATGAGAATATAGGAACCCTAGATGATGAAAGAGAAGGAAATGTGGATTC 356
Query 354 TTTTGGTGTTGGGAGTTGGCGGGTTAAGAAACGGGTCGGGTCATCGACAACAACAGCAGC 413
|||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 357 TTTTGGTGTTGGGAGTTGGCGGGTTAAGAAACGGGTCGGGTCAT---------CAGCAGC 407
Query 414 AGCGAAGAGAGTTAGATCTAATTGGGTATCGAAAATTGGGGATGGGGATGAGAAAATTAG 473
|||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||
Sbjct 408 AGCGAAGAGAGTTAGATCCAATTGGGTATCGAAAGTTGGTGATGGGGATGAGAAAATTAG 467
Query 474 TGGAGGGGAAGAATTGGAAGGTGGGTTTAGGGATTTTAGTAGAGAAGATTCAGAGAGTCC 533
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 468 TGGAGGGGAAGAATTGGAAGGTGGGTTTAGGGATTTTAGTAGAGAAGATTCTGAGAGTCC 527
Query 534 AATAAAGGAAGAGTCTTTGGATAGAGATGGTGGTGGGTTTTATGGTAGAAGAAGGTATGA 593
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 528 GATAAAGGAAGAGTCTTTGGATAGAGATGGTGGTGGGTTTTATGGTAGAAGAAGGTATGA 587
Query 594 GAGTAACAATAGTAGTGGAAACAGAGAATTTGAATCGAATATGGATGGAGGAGGAAGAGA 653
|||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||
Sbjct 588 GAGTAACAATAGTAGTGGCAACAGAGAATTCGAATCGAATATGGATGGAGGAGGAAAAGA 647
Query 654 AGGTGTGAAGATATGGTTACAAGAGTTAGGGTTAGGGAGATATTGGCCTATGTTTGAGAT 713
||| |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 648 AGGGGTGAAGATTTGGCTACAAGAGTTAGGGTTAGGGAGATATTGGCCTATGTTTGAGAT 707
Query 714 ACATGAGGTTGATGAAGAGGTTTTGCCATTGTTGACATTGGAAGATCTTAAAGATATGGG 773
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 708 ACATGAGGTTGATGAAGAGGTTTTACCATTGTTGACATTGGAAGATCTTAAAGATATGGG 767
Query 774 GATTAATGCTGTTGGGTCGAGGAGGAAGATGTTTTGTGCTATTCAGAAGCTTGGTAGGGA 833
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 768 GATTAATGCTGTTGGATCGAGGAGGAAGATGTTTTGTGCTATTCAAAAGCTTGGTAGGGA 827
Query 834 GTTCTCATG 842
|||||||||
Sbjct 828 GTTCTCATG 836
> AT5G23680.1 | Symbols: | Sterile alpha motif (SAM) domain-containing
protein | chr5:7985354-7986851 REVERSE LENGTH=1498
Length=1498
Score = 289 bits (156), Expect = 4e-77
Identities = 189/205 (92%), Gaps = 1/205 (0%)
Strand=Plus/Plus
Query 635 TGGATGGAGGAGGAAGAGAAGGTGTGAAGATATGGTTACAAGAGTTAGGGTTAGGGAGAT 694
|||| ||| |||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1072 TGGA-GGAAGAGGAAAAGAAGGAGTGAAGATATGGTTACAAGAGTTAGGGTTAGGGAGAT 1130
Query 695 ATTGGCCTATGTTTGAGATACATGAGGTTGATGAAGAGGTTTTGCCATTGTTGACATTGG 754
||||||| ||||||||||| ||||| ||||||||| | || || ||||||||||||||||
Sbjct 1131 ATTGGCCAATGTTTGAGATGCATGAAGTTGATGAACAAGTGTTACCATTGTTGACATTGG 1190
Query 755 AAGATCTTAAAGATATGGGGATTAATGCTGTTGGGTCGAGGAGGAAGATGTTTTGTGCTA 814
| ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |
Sbjct 1191 AGGATCTTAAAGATATGGGGATTAATGCTGTTGGGTCTAGGAGGAAGATGTATTGTGCAA 1250
Query 815 TTCAGAAGCTTGGTAGGGAGTTCTC 839
||||||||||||| |||||||||||
Sbjct 1251 TTCAGAAGCTTGGGAGGGAGTTCTC 1275
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41041298099
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5