BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg485239 Length=2050 Score E Sequences producing significant alignments: (Bits) Value AT3G48860.2 | Symbols: | unknown protein; INVOLVED IN: biologi... 3086 0.0 AT5G23700.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 802 0.0 > AT3G48860.2 | Symbols: | unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G23700.1); Has 12429 Blast hits to 9751 proteins in 897 species: Archae - 180; Bacteria - 1190; Metazoa - 6552; Fungi - 1361; Plants - 886; Viruses - 50; Other Eukaryotes - 2210 (source: NCBI BLink). | chr3:18117486-18122093 FORWARD LENGTH=2107 Length=2107 Score = 3086 bits (1671), Expect = 0.0 Identities = 1927/2047 (94%), Gaps = 31/2047 (2%) Strand=Plus/Plus Query 1 TTTTCCCTTCCGTTTTCGCGAGAAAATTTAGC-TTTTCCCCGAGAAAAATCCATTTTCTC 59 ||||||||||||||||| ||||||||| || | ||||||||||| ||| | ||||||||| Sbjct 2 TTTTCCCTTCCGTTTTCTCGAGAAAATCTACCTTTTTCCCCGAG-AAATTTCATTTTCTC 60 Query 60 TGGTTCATCTTCTTTTTGCTCGCTTAAATACAGCGATTGCATCCAGCTAATTAGTAACTT 119 ||||||| || ||| ||||||||||||||||||||||| |||||| | || |||| ||| Sbjct 61 TGGTTCACCTGCTTGTTGCTCGCTTAAATACAGCGATTTCATCCAACCAACAAGTACCTT 120 Query 120 CACGAACTCTCTGATGGATCGGAGGAGGGCGGGTAGCCCAGTGTATGGTCGCCAGTGGAG 179 ||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 CACCAACACACTGATGGATCGGAGGAGGGCGGGTAGCCCAGTGTATGGTCGCCAGTGGAG 180 Query 180 CGAATCATCGAACAGTACGGAAACGACATCGCCGGCGATGTCTCCTGCTCACCGGAAGCA 239 ||||||||||||||||||||| | ||||| |||||||||||||||||||||||||| || Sbjct 181 CGAATCATCGAACAGTACGGAGGCAACATCACCGGCGATGTCTCCTGCTCACCGGAAACA 240 Query 240 GCTCGGTGGTATCGGAGGTTTCTCCACCGTCAAACGGACTCAGAACGTAGCTGCAAAAGC 299 |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| Sbjct 241 GCTCGGTGGTATCGGAGGTTTCTCCACCGTTAAACGGACTCAGAACGTAGCTGCCAAAGC 300 Query 300 GGCGGCACAACGATTGGCTAAGGTTATGGCCTTGCAGAACAAAGACAACGGAGACGAAGA 359 |||||||| ||||| |||||||| |||||||| |||||||||||||||||||||||||| Sbjct 301 CGCGGCACAGCGATTAGCTAAGGTCATGGCCTTACAGAACAAAGACAACGGAGACGAAGA 360 Query 360 TGATGAAGATGAAGATGAAGATCTAAGTCTCAGATTCGCATCTCCTTCTTTGAAACCTGC 419 ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| Sbjct 361 TGATGAAGATGAAGATGAAGATCTAAGTCTCAGATTCGCATCTGCTTCTTTAAAACCTGC 420 Query 420 TCGTCATGCACCTTCTTCTCTTTCCTCTACTGGAAGTAATAGCAGCAACGGAAACAGTAA 479 ||||||||||||||||||| | ||||| || ||||| ||||||||||||||||| | ||| Sbjct 421 TCGTCATGCACCTTCTTCTATCTCCTCCACCGGAAGCAATAGCAGCAACGGAAATAATAA 480 Query 480 TTTGCCGGCTGTTTC-TTTCGCTCCCCGAACTAGATCGCCGTCTCCTGCGTTAGGCAGGA 538 ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| Sbjct 481 TTTGCCGGCTGTTTCATTT-GCTCCCCGAACTAGATCGCCGTCTCCTGCGTTAGGCAGGA 539 Query 539 ACTTCGCCGAGCAAGT-GC--CTTCAGTGCGTTCTGCTTCAGCCGGAAGGCCGTCAATGT 595 |||||||||||||||| | |||||||||| |||||||||||||||||||||||||||| Sbjct 540 ACTTCGCCGAGCAAGTACCTTCTTCAGTGCGGTCTGCTTCAGCCGGAAGGCCGTCAATGT 599 Query 596 CTGCTAGATCCACGACTCCGACTCCGATTCCTAATCTAATGCCGCCTAGTAGGGTGTCGG 655 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 600 CTGCTAGATCTACGACTCCGACTCCGATTCCTAATCTAATGCCGCCTAGTAGGGTGTCGG 659 Query 656 TGAAAACTCCGGTTTCTATTCCTCCACTTGATCCTCCAACTAGGAGCAGAGATAAAAGGT 715 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 660 TGAAAACTCCGGTTTCTATTCCTCCACTTGATCCTCCAACTCGGAGCAGAGATAAAAGGT 719 Query 716 TTTTTGCTGATGTACCATCAGTAAATTCAAAAGAAAAGGGTGATCAGCGGGAAGCTTCAG 775 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 720 TCTTTGCTGATGTACCATCAGTAAATTCAAAAGAAAAGGGTGATCAGCGGGAAGCTTCAG 779 Query 776 CTCTCCGTGATGAACTGGATATGCTACAAGAGGAGAATGAGAATGTACTGGAGAAGCTTC 835 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 780 CTCTTCGTGATGAACTGGATATGCTACAAGAGGAGAATGAGAATGTACTGGAGAAGCTTC 839 Query 836 GTCGTGCGGAAGAAAAAAGGGTGGAAGCAGAAGCTAGGGCTAAGGAGCTCGAAAAACAGG 895 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 840 GTCGTGCGGAAGAAAAAAGGGTGGAAGCAGAAGCTAGGGCTAAGGAGCTCGAGAAACAGG 899 Query 896 TTGCCTCTCTTGGAGAAGGAGTGTCCCTGGAGGCGAAATTGTTAAGCAGGAAAGAAGCAG 955 |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| Sbjct 900 TTGCCTCTCTTGGAGAAGGAGTTTCCTTGGAGGCGAAATTGTTAAGCAGGAAAGAAGCAG 959 Query 956 CGTTGCGTCAAAGAGAGGCTGCTCTAAATGCTGCTAAACAGAAAAAGAGTGGAAAGGATG 1015 | |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| Sbjct 960 CATTGCGTCAAAGAGAGGCTGCTCTAAATGTTGCTAAACAAAAAAAGAGTGGAAAGGATG 1019 Query 1016 ATGAAATTGTTTCCCTACGTTCGGAACTTGAGAACTTGAAAGACGAGGCTACAACTGCTG 1075 | ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| Sbjct 1020 AGGAAATTGTTTCCCTACGTTCGGAGCTTGAGAACTTGAAAGATGAGGCTACAACTGCTG 1079 Query 1076 CAGAACGGCTTCAAGAAGCAGAGTCTGAAGCAAAGTCTCTTCGCACAATGACTCAAAGGA 1135 ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| Sbjct 1080 CAGAACGGCTTCAAGAAGCAGAGTCTGAAGCGAAGTCTCTTCGCACAATGACTCAGAGGA 1139 Query 1136 TGATTTTAACACAGGACGAAATGGAAGAAGTAGTTCTGAAGAGATGCTGGCTTGCCCGGT 1195 |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| Sbjct 1140 TGATTTTAACACAGGATGAAATGGAAGAAGTAGTTCTGAAGAGATGCTGGCTTGCTCGGT 1199 Query 1196 ATTGGGGCTTGGCTGTGCAACATGGCATTTGTGCGGATATAGCACCATCCAGGCATGAGC 1255 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1200 ATTGGGGCTTGGCTGTGCAACATGGCATTTGTGCGGATATAGCACCATCCAGGCAAGAGC 1259 Query 1256 ACTGGTCAGCGTTGGCTCCTCTTCCATTTGAGCTCGTCACCTCTGCAGCACAGAAGGCGA 1315 |||||||| |||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct 1260 ACTGGTCAAAGTTGGCTCCTCTTCCATTTGAGCTCGTCACTTCAGCAGCACAGAAGGCGA 1319 Query 1316 AGGAGTTA-------A-AA-GGTGGGAATGATCGGAGTAAGGCCGCTAGAGATTTGAGTG 1366 |||||||| | || ||||||||||||||||||||||| |||||||||||||||| Sbjct 1320 AGGAGTTATCTTGGGATAAAGGTGGGAATGATCGGAGTAAGGCGGCTAGAGATTTGAGTG 1379 Query 1367 ATCTAACTGGAGAAGGAAATATTGAAAGTATGCTTTCAGTTGAGATGGGTTTGAGAGAGC 1426 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1380 ATCTAACTGGAGAAGGAAATATTGAAAGTATGCTTTCAGTTGAGATGGGTTTGAGAGAGC 1439 Query 1427 TAGCATCATTAAAGGTTGAGGATGCTGTTGTGCTTGTATTCGCCCAGCAGAGAAAACTGA 1486 |||||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||| Sbjct 1440 TAGCATCATTAAAGGTGGAGGATGCTGTTGTGCTTATATTCGCCCAGCAGAGAAAGTTGA 1499 Query 1487 GTTTGGTTCGTCAAACTGTTTCTGACTCCAAAGGTCATGGAGAATCCAGATTTATCGATG 1546 |||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1500 GTTTGGTTCGCCACACTGTTTCCGACTCCAAAGGTCATGGAGAATCCAGATTTATCGATG 1559 Query 1547 CCTATGAACTGGGTGAAGCGGAACAAGAAGATGTTGCCTTTAAGCAGGCATGGCTGATGT 1606 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1560 CATATGAACTGGGTGAAGCGGAACAAGAAGATGTTGCCTTTAAGCAGGCATGGCTGATGT 1619 Query 1607 ACTTTTGGGGAAGAGCTAAGTTGCACGGTGTGGAAGATGACATCGCAGAGGAACGTGTCC 1666 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1620 ACTTCTGGGGAAGAGCTAAGTTGCACGGTGTGGAAGATGACATCGCAGAGGAACGTGTCC 1679 Query 1667 AGTTATGGATCAGCCGTAGCAGTGGGAAATCTCAGACGACTTCTCATGATGCCTTGGATG 1726 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1680 AGTTATGGATCAGCCGTAGCAGTGGGAAATCTCAGACGACTTCTCATGATGCCTTGGATG 1739 Query 1727 TGGAAAGAGGGTTGATAGAGCTAAGGAAACTGGGAATAGAGCAACAGTTGTGGGAAGCTT 1786 ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| Sbjct 1740 TGGAAAGAGGGTTGATAGAGCTACGAAAACTGGGAATAGAGCAACAGTTGTGGGAAGCTT 1799 Query 1787 CTCGAAGAGAAATCGATCAGCTTCCATCGCCTACTTCTTCGAATCACGATCTCGATGCTG 1846 ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1800 CTCGACGAGAAATCGATCAGCTTCCCTCGCCTACTTCTTCGAATCACGATCTCGATGCTG 1859 Query 1847 ATTCATAGTAAAGTCTCTTCCTCT-CTTTGGGAGAAGAAATTTTCGTCCTGTATAT-T-T 1903 |||||||||||||||||||||| | ||||| ||||||||||||||| ||||||| | | Sbjct 1860 ATTCATAGTAAAGTCTCTTCCTTTTCTTTGATAGAAGAAATTTTCGTTTTGTATATCTCT 1919 Query 1904 CGTTTCATGTAAGTTTCACGAAGAATCTGT-GTGCCATTGTATTTTTCTTTCCCTTTTAG 1962 ||| ||||||||||||||||||||||||| ||| |||||||||||| | | |||| Sbjct 1920 CGT--CATGTAAGTTTCACGAAGAATCTGTTGTGTCATTGTATTTTT-TATG--TTTTCC 1974 Query 1963 -TTTTCACACTTGAGTGTGTAAGCA---G-TATTCTTATTTTTGCAATCAAGTCCAAAAA 2017 ||||||||||| ||||||||||| | ||||||||||||||||||||| |||||||| Sbjct 1975 CTTTTCACACTTAAGTGTGTAAGCTTTTGGTATTCTTATTTTTGCAATCAATTCCAAAAA 2034 Query 2018 -TTTTGG 2023 |||||| Sbjct 2035 GTTTTGG 2041 > AT5G23700.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G48860.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:7992788-7996420 FORWARD LENGTH=1785 Length=1785 Score = 802 bits (434), Expect = 0.0 Identities = 841/1030 (82%), Gaps = 57/1030 (6%) Strand=Plus/Plus Query 492 TTCTTTCGCTCCCCG-AACTAGATCGCCGTCTCCTGCGTTAGGCAGGAACTTCGCCGAGC 550 ||| ||||||| ||| || | |||||| || |||||| |||| |||||| || | |||| Sbjct 348 TTCCTTCGCTCGCCGTAA-TCGATCGCATTCACCTGCGATAGGTAGGAACATCACTGAGC 406 Query 551 AAGTGCCTTCAGTGCGTTCTG-CTTCAG-CCGGAAGGCCGTCAATGTCT-GCTAGATCCA 607 ||||| ||||||||||||| | | || | | |||||||| |||| || | | ||||| || Sbjct 407 AAGTGACTTCAGTGCGTTC-GTCGTC-GACAGGAAGGCCATCAACGTTTAG-TAGAT-CA 462 Query 608 -CGACTCCGACTCCGAT-TCCTAATCT-AATGCCGCCTAGTAGGGTGTCGGTGAAAACTC 664 | ||||||| | || | ||| | | ||||| |||| | || ||| ||||| ||| Sbjct 463 TCAACTCCGAATGCG-TCTCC-CCTTTGGATGCCACCTA--A-GGCATCGTTGAAACCTC 517 Query 665 CGGT-TTCTATTCCTCCACTTGATCCTCCAACT-AGGAGCAGAGATAAAAGGTTTTTTGC 722 |||| | |||||||||| |||||| | || | |||| |||||| |||| | |||| Sbjct 518 CGGTGAT-TATTCCTCCAATTGATCATTCATTTAAGGA-TAGAGATCAAAGATACTTTGG 575 Query 723 TGATGTACCA---TCAGTAAATTCAAAAGA-AAAGGGTGATCAGCGGGAAGCTTCAGCTC 778 |||||||||| | ||||||||| | ||| || |||| ||||||| ||||||||||||| Sbjct 576 TGATGTACCACGCTTAGTAAATTCGAGAGATAAGGGGT-ATCAGCGAGAAGCTTCAGCTC 634 Query 779 TCCGTGATGAACTGGATATGCTACAAGAGGAGAATGAGAATGTACTGGAGAAGCTTCGTC 838 | ||||||||| ||||||||||||||||||||||||||| |||| |||||||||||| | Sbjct 635 TTCGTGATGAAGTGGATATGCTACAAGAGGAGAATGAGATTGTATTGGAGAAGCTTCACC 694 Query 839 GTGCGGAAGAAAAAAGGGTGGAAGCAGAAGCTAGGGCTAAG-GAGCTCGAAAAACAGGTT 897 |||| ||||||| | | || ||||||||| |||||| | ||||| || ||||||||| Sbjct 695 GTGCAGAAGAAATGCGTGAGGCAGCAGAAGCCAGGGCT-CGAGAGCTGGAGAAACAGGTT 753 Query 898 GCCTCTCTTGGAGAAGGAGTGTCCCTGGAGGCGAAATTGTTAAGCAGGAAA-GAAGCAGC 956 || |||||||||||||||||||| |||||||| ||||||||||| | |||| ||||| || Sbjct 754 GCTTCTCTTGGAGAAGGAGTGTCTCTGGAGGCTAAATTGTTAAGTA-GAAAGGAAGCGGC 812 Query 957 GTTGCGTCAAAGAGAGGCTGCTCTAAATGCTGCTAAAC-AG-AAAAAGAGT-GGAAAGGA 1013 ||||| ||| | ||||||||||| || |||||| ||| || ||||||| | ||||| | Sbjct 813 ATTGCGCCAACGTGAGGCTGCTCTTAAGGCTGCT-AACGAGAAAAAAGA-TGGGAAA-AA 869 Query 1014 TGATGAAATTGTTTCCCTACGTTCGGAACTTGAGAACTTGAAAGACGAGGCTA-CAACTG 1072 || ||| |||||||||| ||||| ||| || ||| |||||| || ||||| | ||| | Sbjct 870 GGAGGAAGTTGTTTCCCTCCGTTCAGAAATTCAGATCTTGAAGGATGAGGC-AGAAACAG 928 Query 1073 CTGCAGAACGGCTTCAAGAAGCAGAGTCTGAAGCAAAGTCTCTTCGCACAATGACTCAAA 1132 |||| ||| | ||||||||||| || || ||||||||| ||||||| | ||||||||||| Sbjct 929 CTGCGGAATGCCTTCAAGAAGCGGAATCAGAAGCAAAGGCTCTTCGTATAATGACTCAAA 988 Query 1133 GGATGATTTTAACACAGGACGAAATGGAAGAAGTAGTTC-TGAAGAGATGCTGGCTTGCC 1191 | ||| |||||||||||||||||||||| ||||||| | |||||||||||||||||||| Sbjct 989 GAATGGTTTTAACACAGGACGAAATGGAGGAAGTAG-CCTTGAAGAGATGCTGGCTTGCC 1047 Query 1192 CGGTATTGGGGCTTGGCTGTGCAACATGGCATTTGTGCGGATATAGCACCATCCAGGCAT 1251 ||||||||||| ||||| ||||| |||||||||||||| || |||||||||||||||||| Sbjct 1048 CGGTATTGGGGTTTGGCAGTGCAGCATGGCATTTGTGCTGACATAGCACCATCCAGGCAT 1107 Query 1252 GAGCACTGGTCAGCGT-TGGCTCCTCTTCCATTTGAGCTCGTCACCTCTGCAGCACAGAA 1310 || | ||||| || | |||||||||||||||||||||| |||| ||||||||||| || Sbjct 1108 GAAAAATGGTCGGC-TCTGGCTCCTCTTCCATTTGAGCTGGTCATATCTGCAGCACA-AA 1165 Query 1311 GGCGAAGGAGTTAAAAGGTGGGAATGATCGGAGTAAGGCCGCTAGAGATTTGAGTGATCT 1370 | | | || || | ||||| ||| || | |||||| ||| |||||||| Sbjct 1166 ----A-G-ACC-AA--GG----A-TGATCAGAGCAAAACTGCTAGATTTTTAAGTGATCT 1211 Query 1371 AACTGGAGAAGGAAATATTGAAAGTATGCTTTCAGTTGAGATGGGTTTGAGAGAGCTAGC 1430 | |||||||||||||||| |||||||||||||||||||||||||||||||||||||| || Sbjct 1212 ACCTGGAGAAGGAAATATCGAAAGTATGCTTTCAGTTGAGATGGGTTTGAGAGAGCTGGC 1271 Query 1431 ATCATTAAAGGTTGAGGATGCTGTTGTGCTTGTATTCGCCCAGCAGAGAAAACTGAGTTT 1490 ||| ||||||||||||||||||||| |||||| |||||| ||| |||||| || |||||| Sbjct 1272 ATCCTTAAAGGTTGAGGATGCTGTTATGCTTGCATTCGCACAGAAGAGAACACCGAGTTT 1331 Query 1491 GGTTCGTCAA 1500 |||||||||| Sbjct 1332 GGTTCGTCAA 1341 Score = 243 bits (131), Expect = 7e-63 Identities = 215/254 (85%), Gaps = 11/254 (4%) Strand=Plus/Plus Query 1561 GAAGCGGAACAAGAAGATGTTGCCTTTAAGCAGGCATGGCTGATGTACTTTTGGGGAAGA 1620 |||| |||||||||||||||||||||||||||||||||||| |||||||| ||||| ||| Sbjct 1486 GAAGGGGAACAAGAAGATGTTGCCTTTAAGCAGGCATGGCTTATGTACTTCTGGGGTAGA 1545 Query 1621 GCTAAGTTGCACGGTGTGGAAGATGACATCGCAGAGGAACGTGTCCAGTTATGGATCAGC 1680 || |||||||| |||||||||| ||||| ||||| |||||| ||||||| |||| ||| Sbjct 1546 GCCAAGTTGCATAGTGTGGAAGAAGACATTGCAGATGAACGTTTCCAGTTTTGGACCAGT 1605 Query 1681 CGTAGCAGTGGGAAA-TCTCAGACGACTTCTCATGATGCC-TTGGATGTGGAAAGAGGGT 1738 ||||| | ||||| |||| ||||||| || |||||| ||| | |||||| |||| | Sbjct 1606 CGTAGT-GAAGGAAAATCTC---CGACTTCACAAGATGCCGTTG-ACGTGGAACGAGGTT 1660 Query 1739 TGATAGAGCTAAGGAAACTGGGAATAGAGCAACAGTTGTGGGAAGCTTCTCG-AAGAGAA 1797 || |||||||||||||||| ||| |||||||||| || |||||||||| ||| || |||| Sbjct 1661 TGTTAGAGCTAAGGAAACTAGGAGTAGAGCAACAATTATGGGAAGCTTGTCGCAA-AGAA 1719 Query 1798 ATC-GATCAGCTTC 1810 | | |||||||||| Sbjct 1720 A-CAGATCAGCTTC 1732 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 101605903080 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5