BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485242
Length=1098
Score E
Sequences producing significant alignments: (Bits) Value
AT3G48880.1 | Symbols: | RNI-like superfamily protein | chr3:1... 1530 0.0
AT2G37560.1 | Symbols: ORC2, ATORC2 | origin recognition comple... 73.1 5e-12
> AT3G48880.1 | Symbols: | RNI-like superfamily protein | chr3:18126962-18129189
FORWARD LENGTH=1392
Length=1392
Score = 1530 bits (828), Expect = 0.0
Identities = 901/937 (96%), Gaps = 2/937 (0%)
Strand=Plus/Plus
Query 57 AAGAATGGAAGAAGAGTATGAGAGTCGTCGAGTT-AGGAGATGGGAAGAGTTGGACACTG 115
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 278 AAGAATGGAAGAAGAGTATGAGAGTCGTCGA-TTGAGGAGATGGGAAGAGTTGGACACTG 336
Query 116 ACATCTTAGTAAGAATTTTCCAGAAGTTTAGCGTCTTTGAGTTGACTTCAGGATTAGCTC 175
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 337 ACATCTTAGTAAGAATTTTCCAGAAGTTTAGCGTCTTTGAGTTGACTTCGGGATTAGCTC 396
Query 176 ATGTTTGTAGAGGATGGAGAGCTGCTTGTTGCGATCCGATTCTATGGAAGACTCTTGATT 235
||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||
Sbjct 397 ATGTTTGTAGAGGATGGAGAGCTGCTTGTTGCGATCCGATTCTTTGGAAGACGGTGGATT 456
Query 236 TGTCTCACATGAGATCTAGTTTCATCAAGATCCCATTAGAGCCTTATGTCTATGTGGAAC 295
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 457 TGTCAAACATGAGATCTAGTTTCATCAAGATCCCATTAGAGCCTTATGTCTATGTGGAAC 516
Query 296 GCCGATCTGATGAGGCCCTGACCAGGATCCTGAAACTCTCCATGAATCTTAGTGGAGGAA 355
||||||||||||||||||| ||| | |||||||||||||||||||| ||||| |||||||
Sbjct 517 GCCGATCTGATGAGGCCCTAACCCGCATCCTGAAACTCTCCATGAACCTTAGCGGAGGAA 576
Query 356 ACACGAGGACCTTGATTTTTCATTTCAACTTGTTCTTGAGTGATGATCAGCTTACTTACA 415
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 577 GCACGAGGACCTTGATTTTTCATTTCAACTTGTTCTTGAGTGATGATCAGCTTACTTACA 636
Query 416 CCGCAGAAAGGTGTCCAGGGTTGAGACGGGTGGTCCTACCGGCTTGGAACAGAATAAAGA 475
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 637 CCGCAGAAAGGTGTCCAGGGTTGAGACGGGTCGTCCTACCGGCTTGGAACAGAATAAAGA 696
Query 476 AGACTGGTATATGCAAAGCGATAAGAATCTGGAAAGATCTCGAGTCACTAACAATGCCGA 535
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 697 AGACTGGTATATGCAAAGCGATAAGAATCTGGAAAGATCTAGAGTCACTAACAATGCCAA 756
Query 536 GCATCGCAAACCCGCCTTATCTCTTAACAGAAATCGCCAAGAACTGCAAGAATTTCAAAG 595
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 757 GCATCGCAAACCCGCCTTATCTCTTAACAGAAATTGCCAAGAACTGCAAGAATTTTAAAG 816
Query 596 AGCTGAAGATCATGGGTCCATTTGAGGTCTTCTTTGCAAACACGCTCATCACTTGCCTCC 655
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 817 AGCTGAAGATCATGGGTCCATTCGAGGTCTTCTTTGCAAACACGCTCATCACTTGCCTCC 876
Query 656 CAAACATCAAAACCCTCAGCATCAGATGCTCGGCGATAAAGCGGGAAGCACTCATGAAGA 715
||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 877 CAAACATCAAAACACTCAGCATCAGATGCTCGGCGATAAAGCGGGAAGCACTGATGAAAA 936
Query 716 TCCTTGACGGATTACCAAGCCTTGAAGTGCTCAACATATCACACTCTCACCTAGTGGAGT 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 937 TCCTTGACGGATTACCAAGCCTTGAAGTGCTCAACATATCACACTCTCACCTAGTGGAGT 996
Query 776 ACAGCGGTTGGCAACCGCAGCAGAAAGTGATTGTTAGAGAGCTGGATAAGACGATAATGG 835
||||||||||||| || |||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 997 ACAGCGGTTGGCAGCCTCAGCAGAAGGTGATTGTTAGAGAGCTCGATAAGACGATAATGG 1056
Query 836 AGAAAACAGCGAGGCTAAAGAAGTTCTTGACATGCATGGAGCACAAGACGTGTGTGATGT 895
|||||||||| ||||||||||| |||||||| |||||||| |||||||||||||||||||
Sbjct 1057 AGAAAACAGCAAGGCTAAAGAAATTCTTGACTTGCATGGATCACAAGACGTGTGTGATGT 1116
Query 896 GTCAGAGGACTGAGAGTGATGAAGGGATTGTGAGATGGTATAAGTATGAGGAAGGAGACT 955
||||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1117 GTCAGAGGACTGAAAACGATGAAGGGATTGTGAGATGGTACAAGTATGAGGAAGGAGACT 1176
Query 956 GGAAGGTTGATGAAGTGAGTTCTCTTCATCTTTGATG 992
|||||||||||||||||||||||||||||||||||||
Sbjct 1177 GGAAGGTTGATGAAGTGAGTTCTCTTCATCTTTGATG 1213
Score = 108 bits (58), Expect = 1e-22
Identities = 80/90 (89%), Gaps = 3/90 (3%)
Strand=Plus/Plus
Query 1011 TTCTTCT-TGTT-CTTGTTTTGATTTGAATCGTATTATGTGTATATATGTGTAGGCAATG 1068
||||| | |||| |||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 1287 TTCTT-TGTGTTGTTTGTTTTGATTTGAATCGTATTATGTGTATATATCTGTAGGCTATG 1345
Query 1069 CCAATGTTTGTATGTTGTGATCAACTTTTG 1098
|||||| ||| ||| ||||||||||||||
Sbjct 1346 CCAATGAATGTCTGTAGTGATCAACTTTTG 1375
> AT2G37560.1 | Symbols: ORC2, ATORC2 | origin recognition complex
second largest subunit 2 | chr2:15758645-15761262 FORWARD
LENGTH=1507
Length=1507
Score = 73.1 bits (39), Expect = 5e-12
Identities = 39/39 (100%), Gaps = 0/39 (0%)
Strand=Plus/Plus
Query 3 ATTGTAACGGTGTCGTCGTCGCCAAACGATTTGCCTCTT 41
|||||||||||||||||||||||||||||||||||||||
Sbjct 156 ATTGTAACGGTGTCGTCGTCGCCAAACGATTTGCCTCTT 194
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53814984240
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5