BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485244
Length=950
Score E
Sequences producing significant alignments: (Bits) Value
AT3G48890.1 | Symbols: ATMP2, ATMAPR3, MSBP2, MAPR3 | membrane-... 1482 0.0
> AT3G48890.1 | Symbols: ATMP2, ATMAPR3, MSBP2, MAPR3 | membrane-associated
progesterone binding protein 3 | chr3:18129601-18131573
FORWARD LENGTH=990
Length=990
Score = 1482 bits (802), Expect = 0.0
Identities = 905/953 (95%), Gaps = 13/953 (1%)
Strand=Plus/Plus
Query 1 GAAAATTAAAACACAAAACGTTActcttctctctctcgctctcttctctttcgcttctcg 60
||||||||||||||||||||||| | ||| ||||| ||| |||||||||||||||||
Sbjct 1 GAAAATTAAAACACAAAACGTTA--C-TCT-TCTCT--CTC-ATTCTCTTTCGCTTCTCG 53
Query 61 atagc-tctcAAATCATGGTTGTGCAAATATGGGAGACGTTGAAGGAAACCATCACAGCT 119
||||| ||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 54 ATAGCTTCTCAAATCATGGTTCAGCAAATATGGGAGACGTTGAAGGAAACAATCACAGCT 113
Query 120 TACACTGGACTTTCTCCAGCTGCGTTTTTCACCGTACTAGCTCTCGCTTTCGCCGTTTAC 179
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 114 TACACTGGACTTTCTCCAGCTGCGTTTTTCACCGTACTTGCTCTCGCTTTCGCCGTTTAC 173
Query 180 CAAGTCGTCTCCGGTTTCTTCGTTTCTCCTGAAGTTCACCGACCTCGTTCTTTGGAGGTT 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 174 CAAGTCGTCTCCGGTTTCTTCGTTTCTCCTGAAGTTCACCGACCTCGTTCTTTGGAGGTT 233
Query 240 CAGCCTCAATCGGAGCCTCTTCCGCCGCCGGTTCAGCTGGGAGAAATCACTGAGGAGGAG 299
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 234 CAGCCTCAATCGGAGCCTCTTCCACCGCCGGTTCAGCTCGGAGAAATCACTGAGGAGGAG 293
Query 300 CTTAAGCTGTATGATGGCTCCGATTCTAAAAAGCCCCTTCTTATGGCGATCAAGGGTCAG 359
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 294 CTTAAGCTTTATGATGGCTCCGATTCTAAAAAGCCCCTTCTTATGGCGATCAAGGGCCAG 353
Query 360 ATCTATGATGTTTCCCAGAGCAGGATGTTTTATGGACCAGGTGGGCCATATGCTCTGTTT 419
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 354 ATCTATGATGTTTCTCAGAGCAGGATGTTTTATGGACCAGGTGGGCCATATGCTCTGTTT 413
Query 420 GCAGGGAAAGATGCAAGCCGAGCTCTGGCAAAGATGTCATTTGAGGACCAAGACTTGACT 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 414 GCAGGGAAAGATGCAAGCCGAGCTCTGGCAAAGATGTCATTTGAGGACCAAGACTTGACT 473
Query 480 GGAGATATCTCAGGTCTCGGTGCATTTGAGCTAGAGGCGTTACAAGACTGGGAATACAAG 539
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 474 GGAGACATCTCAGGTCTCGGTGCATTTGAGCTAGAGGCGTTACAAGACTGGGAGTACAAG 533
Query 540 TTCATGAGCAAGTATGTCAAAGTCGGCACCATTCAAAAGAAGGATGAAGAAGGCAAAGAA 599
|||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct 534 TTCATGAGCAAGTATGTCAAAGTCGGAACCATTCAAAAGAAGGATGGAGAAGGCAAAGAA 593
Query 600 AGTTCAGAACCTTCTGAAACAAAGGCTACCTCTGCGGAAGGTCTGTCTACAAACACTGGA 659
|||||||||||||| ||| ||||| || |||||||||||||||| |||||||||||||||
Sbjct 594 AGTTCAGAACCTTCCGAAGCAAAGACTGCCTCTGCGGAAGGTCTTTCTACAAACACTGGA 653
Query 660 GAAGAAGCTTCCGCGGTTACCCATGATGAAACTTCTAGAAGCATAGACGAGAAAATCGCG 719
||||||||||| || ||||||||||||||||||||||||||| || |||||||||||||
Sbjct 654 GAAGAAGCTTCAGCAATTACCCATGATGAAACTTCTAGAAGCACAGGCGAGAAAATCGCG 713
Query 720 GAAACCACGGAGAAGAAGGATGTCGCAA---ATGATGATGCTGCTGCGAAGGAGTAAAGT 776
||||||||||||||||| ||||| |||| ||||||||| |||||| ||||||||||||
Sbjct 714 GAAACCACGGAGAAGAAAGATGTTGCAACTGATGATGATGATGCTGCAAAGGAGTAAAGT 773
Query 777 CAATGTAATCAGAGGCACACTTTCTCTTGAGATATTAGTGAGATTTTTCAGGGTTTAAGT 836
||||||||| ||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 774 CAATGTAATGAGAGGCACAGTTTCTCTTGAGAAATTAGTGAGATTTTTCAGGGTTTAAGT 833
Query 837 ATGAGTCGTATATAGCTCAATAAAAATGGTGACTTTGTTTGTACTTTTTGGATCTT--AT 894
||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||
Sbjct 834 ATGAGTCGTATATAGCTCAATAAAAATGGTGACCTTGTGTGTACTTTTTGGATCTTGTAT 893
Query 895 AATGACTTCTAATTCTGGTTATGGAAGCTTCAAATTACATTATTTCTACAGTA 947
|||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 894 AATGACATCTAATTCTGGTTATGGAAGCTTCAAAATACATTATTTCTACAGTA 946
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46466585975
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5