BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg485255

Length=546
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G48970.1 | Symbols:  | Heavy metal transport/detoxification ...   813    0.0  


> AT3G48970.1 | Symbols:  | Heavy metal transport/detoxification 
superfamily protein  | chr3:18152288-18153375 REVERSE LENGTH=622
Length=622

 Score =  813 bits (440),  Expect = 0.0
 Identities = 513/548 (94%), Gaps = 5/548 (1%)
 Strand=Plus/Plus

Query  1    ATTGAGTTTTTAAGATCATGTCTATGTCAGTGGAGATAAGAGTTCCAAACTTGGATTGTG  60
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  63   ATTGAGTTTTTAAGATCATGTCTATGACAGTGGAGATAAGAGTTCCAAACTTGGATTGTG  122

Query  61   AAGGATGTGCTTCTAAGCTTAAGAAGACTCTACTCAAGCTAAAAGGAGTGGAAGAAGTGG  120
            ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct  123  AAGGATGTGCTTCTAAGCTTAGGAAGACTCTACTCAAGCTTAAAGGAGTGGAAGAAGTGG  182

Query  121  AAGTAGAGATGGAAACCCAAAAAGTGACGGCTCGAGGATACCGGTTAGAGGAGAAGAAGG  180
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  183  AAGTAGAGATGGAAACCCAAAAAGTGACGGCTCGAGGATACCGGTTAGAGGAAAAGAAGG  242

Query  181  TATTGAAAGCGGTACGACGGGCCGGTAAGGCAGCTGAATTGTGGCCATACCGGTTAGGCA  240
            ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |
Sbjct  243  TATTGAAAGCGGTACGACGTGCCGGTAAGGCAGCTGAACTGTGGCCATACCGGTTAGGTA  302

Query  241  ATAGCCATTTTGCCTCTTTCTATAAGTATCCTTCTTATGTGACCAACCACTATTACTCTG  300
            ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct  303  ATAGCCATTTTGCCTCTTTCTATAAATATCCTTCTTACGTGACCAACCACTATTACTCTG  362

Query  301  ATGCACACCGTACGGATCCCACTGGTGGTGTCCACACTTTTTTCCACACTCCCGCGGTTT  360
            |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||
Sbjct  363  ATGCACACCGTACGGATCCCACCGGTGGTGTCCACACTTTCTTCCACACTCCCGCGGATT  422

Query  361  ACTCCGTTGCGGTGGCCGGGGATGAGATCGCGGCTTCGATGTTTAGTGATGATAATCCCC  420
            |||| ||||| ||||| || |||||||||||||||||||||||||| |||||||||||||
Sbjct  423  ACTCGGTTGCTGTGGCTGGAGATGAGATCGCGGCTTCGATGTTTAGCGATGATAATCCCC  482

Query  421  ATGCTTGTACCATTATGTAAtttttttttCTAACAAAA-TATTTTTTCTGTTTATCTTTC  479
            |||||||||| |||||||| | ||||  | || ||||| ||| ||||| ||| ||||| |
Sbjct  483  ATGCTTGTACTATTATGTAGTCTTTTAGTATA-CAAAAATATGTTTTCAGTTCATCTT-C  540

Query  480  CTT-GTCCAAATTTGATGTGATGTGAttttttttGTATAACCAATGTTGGAATGAGAAAG  538
             || ||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||
Sbjct  541  -TTCGTCCAAATTTGATTTGATGTGATTTTTTTTGTACAACTAATGTTGGAATGAGAAAG  599

Query  539  TAAACTAT  546
            |||| |||
Sbjct  600  TAAAATAT  607



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26171990587


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5