BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485256
Length=1782
Score E
Sequences producing significant alignments: (Bits) Value
AT3G48980.1 | Symbols: | Arabidopsis thaliana protein of unkno... 2699 0.0
AT5G23850.1 | Symbols: | Arabidopsis thaliana protein of unkno... 1000 0.0
> AT3G48980.1 | Symbols: | Arabidopsis thaliana protein of unknown
function (DUF821) | chr3:18155416-18158417 FORWARD LENGTH=1815
Length=1815
Score = 2699 bits (1461), Expect = 0.0
Identities = 1679/1786 (94%), Gaps = 7/1786 (0%)
Strand=Plus/Plus
Query 1 ATGATGAGGAACTCGCCGTCATATAGCTCTG-GAGGACATTCTCGTAATTTCGATACCAT 59
||||||||||||||||||||||||| ||||| | | || |||||||||||||| |||||
Sbjct 1 ATGATGAGGAACTCGCCGTCATATACCTCTGCAACG-CACTCTCGTAATTTCGACACCAT 59
Query 60 TTGGTCTCCACTCGTAAAAACCGGCACCGGTGCTTCCAACCGAtcctacgctttcttctc 119
|| |||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 60 TTTGTCTCCACTCGTCAAAACCGGCACCGGTGCTTCTAACCGATCCTACGCCTTCTTCTC 119
Query 120 cctcttcctcttcctcctcctcggcgcgttcctctccacgcgcctcctcctcga-ccctt 178
| |||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||| |
Sbjct 120 CATCTTTCTCTTCCTCCTCCTCGGCGCGTTTCTCTCCACGCGCCTCCTCCTCGATCCC-T 178
Query 179 ccGTTTTGATAGAGAAAGAAACGGTGTCCGTGACTGAGAGAGGAACGAC-CGAATCCCCA 237
|||||||||||||||||||| ||||||||||||||||||||| ||| || | ||||||||
Sbjct 179 CCGTTTTGATAGAGAAAGAAGCGGTGTCCGTGACTGAGAGAGAAACCACTC-AATCCCCA 237
Query 238 AAATACCCTCAGTCGAGTAAGCTAATTACGGAAAAACCAAAAGAGTTCACGCTAAACTGC 297
||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 238 GAATACCCTCAGTCGACTAAGCTAATTACGGAAAAACCAAAAGAGTTTACGCTAAACTGC 297
Query 298 GCCGGTTTCGCCGGTAACGACACTGTAACTTGCCCAAAGAACAACTATCCGACGAGTTTC 357
|| | |||| |||| |||||||||| ||||||||||||| |||| |||||||||||||||
Sbjct 298 GCTGCTTTCTCCGGCAACGACACTGGAACTTGCCCAAAGGACAATTATCCGACGAGTTTC 357
Query 358 CGGTCCAGCGCCGGGGAAGGCGAATCAGACCGTTCTCCATCCGCCACGTGTCCTGACTAT 417
|| || |||||||| ||||| ||||| ||||||||||||||||||||||| || || ||
Sbjct 358 CGATCTAGCGCCGGAGAAGGAGAATCTGACCGTTCTCCATCCGCCACGTGCCCAGATTAC 417
Query 418 TTCCGATGGATTCACGAGGATCTACGGCCATGGGAGAAGACAGGGATCACGAGGGAAGCC 477
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 418 TTCCGATGGATTCACGAGGATCTACGGCCATGGGAGAAGACCGGGATCACGAGGGAAGCC 477
Query 478 TTGGAGCGCGCCAATGCGACGGCGAATTTCCGGCTGGCAATTATCAACGGGAGGATCTAC 537
|||||||| |||||||||||||||| |||||| ||||| |||||||||||||| ||||||
Sbjct 478 TTGGAGCGAGCCAATGCGACGGCGATTTTCCGCCTGGCGATTATCAACGGGAGAATCTAC 537
Query 538 GTCGAGAAGTTTCGTGAGGCTTTTCAGACGAGAGATGTTTTCACGATCTGGGGATTCGTA 597
|||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 538 GTCGAGAAATTTCGTGAGGCTTTTCAGACAAGAGATGTGTTCACGATCTGGGGATTCGTA 597
Query 598 CAGCTGTTACGGAGATATCCGGGAAAGATTCCGGATCTCGAGCTCATGTTTGACTGCGTT 657
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 CAGCTCCTACGGAGATATCCGGGAAAGATTCCGGATCTCGAGCTCATGTTTGACTGCGTT 657
Query 658 GACTGGCCGGTAGTGAAGGCGGCTGAATTCGCCGGAGTTGATCAACCTCCGCCGCCGCCA 717
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 658 GACTGGCCGGTAGTGAAGGCGGCTGAATTCGCCGGAGTTGATCAACCTCCACCGCCGCCA 717
Query 718 TTGTTCCGTTATTGTGCTAACGACGAGACGCTCGACATTGTATTTCCTGATTGGTCCTAT 777
|||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 718 TTGTTCCGTTATTGCGCGAACGACGAGACGCTCGACATTGTATTTCCCGATTGGTCCTAT 777
Query 778 TGGGGATGGGCTGAGGTGAATATAAAGCCATGGGAGAGTCTATTGAAAGAACTTAGAGAA 837
||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||
Sbjct 778 TGGGGATGGGCTGAGGTGAATATAAAGCCATGGGAAAGTCTGTTGAAAGAACTAAGAGAA 837
Query 838 GGGAACCAGAGGACTAAATGGATAGACAGAGAACCTTATGCTTACTGGAAAGGGAATCCG 897
|| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 838 GGAAACCAGAGGACTAAATGGATAGATAGAGAGCCTTATGCTTACTGGAAAGGGAATCCA 897
Query 898 ACGGTTGCTGAGACGAGACTTGATCTCATGAAATGTAATCTCTCCGAGGAGTATGACTGG 957
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 898 ACGGTTGCTGAGACGAGACTTGATCTCATGAAATGTAATCTCTCCGAGGTGTATGACTGG 957
Query 958 AAAGCTCGTTTGTACAAGCAGGACTGGGTCAAGGAATCAAAGGAAGGTTACAAGCAGTCA 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 AAAGCTCGTTTGTACAAGCAGGACTGGGTCAAGGAATCAAAGGAAGGTTACAAGCAGTCA 1017
Query 1018 GACTTGGCGAGCCAATGCCATCACAGGTACAAGATTTACATAGAAGGGTCTGCATGGTCG 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1018 GACTTGGCGAGCCAATGCCATCACAGGTACAAGATTTACATAGAAGGGTCTGCGTGGTCG 1077
Query 1078 GTGAGTGAGAAGTACATTCTGGCATGTGACTCGGTGACATTGCTGGTCAAACCACATTAC 1137
||||||||||||||||||||||| ||||||||||||||||| |||| ||||| ||||||
Sbjct 1078 GTGAGTGAGAAGTACATTCTGGCTTGTGACTCGGTGACATTAATGGTGAAACCTCATTAC 1137
Query 1138 TACGATTTCTTCACACGAGGTATGTTTCCAGGACACCATTATTGGCCCGTCATGGAAGAC 1197
||||||||||||||| |||||||||||||||| |||||||| ||||| |||| ||| |||
Sbjct 1138 TACGATTTCTTCACAAGAGGTATGTTTCCAGGTCACCATTACTGGCCTGTCAAGGAGGAC 1197
Query 1198 GACAAATGCCGCTCCATCAAATTCGCCGTTGATTGGGGCAACTTGCATATGCAAAAGGCA 1257
||||||||||| |||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 1198 GACAAATGCCGTTCCATCAAATTCGCTGTTGATTGGGGCAACTTGCATATGCGAAAGGCA 1257
Query 1258 CAAGACATCGGGAAGAAGGCAAGTGAGTTTGTGCAACAAGAACTTAAAATGGACTATGTG 1317
|||||||| || |||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1258 CAAGACATAGGTAAGAAGGCAAGTGAGTTTGTGCAACAAGAACTCAAGATGGACTATGTG 1317
Query 1318 TACGATTACATGTTCCATCTCTTAATCCAATACTCTAAACTCCTCCGGTTTAAACCCGAG 1377
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1318 TACGATTACATGTTTCATCTCTTAATCCAATACTCTAAACTCCTCCGGTTTAAACCCGAG 1377
Query 1378 ATCCCTCAGAACTCCACCGAGCTCTGCTCAGAGGCAATGGCGTGCCCGAGGGATGGAAAT 1437
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1378 ATCCCTCAGAACTCCACTGAGCTCTGCTCAGAGGCAATGGCATGCCCGAGGGATGGAAAT 1437
Query 1438 GAGCGGAAGTTTATGATGGAATCACTTGTGAAACGCCCAGCTGAGACCGGTCCCTGCGCC 1497
|| || |||||||||||||||||||| || ||||||||||||||||| ||||||||||||
Sbjct 1438 GAACGAAAGTTTATGATGGAATCACTCGTAAAACGCCCAGCTGAGACAGGTCCCTGCGCC 1497
Query 1498 ATGCCGCCTCCGTATGATCCAGCATCGTTTTACTCGGTTTTGAAAAGGAGACAGAGTACG 1557
|||||||||||||||||||| ||||| ||||| || ||||||||||||||||||||||||
Sbjct 1498 ATGCCGCCTCCGTATGATCCGGCATCATTTTATTCAGTTTTGAAAAGGAGACAGAGTACG 1557
Query 1558 ACTAGTAGAATCGAACAGTGGGAGAGTAAGTACTGGAGGAAGCAGAACAAGACCGGTTCG 1617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1558 ACTAGTAGAATCGAACAGTGGGAGAGTAAGTACTGGAGGAAGCAGAACAAGACCGGTTCG 1617
Query 1618 TAAAATTAGATTGGCGTATAAAGTTTTGTTGTGTAGAGTAAAACCACTTGTCAGAATTGT 1677
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 1618 TAAAATTAGATTGGCGTATAAAGTTTTGGTGTGTAGAGTAAAAGCACTTGTCAGAATTGT 1677
Query 1678 ATCGAGTAGTATAACCTAGAAAACTTGCGATCATTATTTTATTTTCCGCCTTTT-GGTAG 1736
|||||||||||||| |||||||| ||||||| ||||||| || |||| |||| |||||
Sbjct 1678 ATCGAGTAGTATAAATTAGAAAACATGCGATCTTTATTTTCTTCTCCGTTTTTTTGGTAG 1737
Query 1737 AATTCTAACTAATCCATTATGTCTAGTGAATTCGACGATACAAAGT 1782
|||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 1738 AATTTTAACTAATCCATTCTGTCTAGTGAATTCGACGATACAAAGT 1783
> AT5G23850.1 | Symbols: | Arabidopsis thaliana protein of unknown
function (DUF821) | chr5:8038052-8040938 FORWARD LENGTH=1900
Length=1900
Score = 1000 bits (541), Expect = 0.0
Identities = 1012/1237 (82%), Gaps = 42/1237 (3%)
Strand=Plus/Plus
Query 398 CCGCCACGTGTCCTGACTATTTCCGATGGATTCACGAGGATCTACGGCCATGGGAGAAGA 457
|||||||||||||||| || ||||| ||||||||||||||||| || |||||| || ||
Sbjct 481 CCGCCACGTGTCCTGATTACTTCCGTTGGATTCACGAGGATCTCCGTCCATGGTCGAGGA 540
Query 458 CAGGG-ATCACGAGGGAAGCCTTGGAGCGCGCCAATGCGACGGCGAATTTCCGGCTGGCA 516
| ||| |||||||||||||| |||||||| || || |||||||| ||||||||| ||
Sbjct 541 C-GGGAATCACGAGGGAAGCATTGGAGCGAGCTAAAAAGACGGCGACTTTCCGGCTAGCG 599
Query 517 ATTATCAACGGGAGGATCTACGTCGAGAAGTTTCGTGAGGCTTTTCAGACGAGAGATGTT 576
|| || ||||| || ||||||||||| |||| || || |||||||| ||||| ||
Sbjct 600 ATCGTCGGCGGGAAAATTTACGTCGAGAAATTTCAAGATGCATTTCAGACAAGAGACGTG 659
Query 577 TTCACGATCTGGGGATTCGTACAGCTGTTACGG-AGATATCC-GGGAAAGATTCCGGATC 634
||||| |||||||| ||| ||||||| |||||| || || || ||| |||||||| ||||
Sbjct 660 TTCACAATCTGGGGTTTCTTACAGCTTTTACGGAAG-TACCCTGGG-AAGATTCCAGATC 717
Query 635 TCGAGCTCATGTTTGACTGCGTTGACTGGCCGGTAGTGAAG-GCGGCTGAATTCGCCGGA 693
||||||| |||||||||||||||||||||||||| || || || | ||||||||||||
Sbjct 718 TCGAGCTTATGTTTGACTGCGTTGACTGGCCGGTCGT-TAGAGCTACGGAATTCGCCGGA 776
Query 694 GTTGATC-AACC-TCCGCCGCCGCCATTGTTCCGTTATTGTGCTAACGACGAGACGCTCG 751
| | | | || | |||| ||||| |||| ||||| |||| || || |||||||| |
Sbjct 777 GCT-AACGCGCCGT-CGCCTCCGCCGCTGTTTCGTTACTGTGGGAATGAGGAGACGCTTG 834
Query 752 ACATTGTATTTCCTGATTGGTCCTAT-TGGGGATGGGCTGAGGTGAATATAAAGCCATGG 810
| || || |||||||||||||||| | ||||||||||| |||||||||||||||||||||
Sbjct 835 ATATCGTGTTTCCTGATTGGTCCT-TCTGGGGATGGGCGGAGGTGAATATAAAGCCATGG 893
Query 811 GAGAGTCTATTGAAAGAACTTAGAGAAGGGAACCAGAGGACTAAATGGA-TAGACAGAGA 869
|||||| | ||||| ||||| ||||||||||| ||||||||||||||| || |||||||
Sbjct 894 GAGAGTTTGTTGAAGGAACTAAGAGAAGGGAATGAGAGGACTAAATGGATTA-ACAGAGA 952
Query 870 ACCTTATGCTTACTGGAAAGGGAATCCGACGGTTGCTGAGACGA-GACTTGATCTCATGA 928
|| |||||||| |||||||| ||||| | ||| || ||||| | ||| ||||| ||||
Sbjct 953 GCCGTATGCTTATTGGAAAGGTAATCCAATGGTCGCAGAGAC-ACGACAAGATCTTATGA 1011
Query 929 AATGTAATCTCTCCGAGGAGTATGACTGGAAAGCTCGTTTGTACAAGCAGGACTGGGTCA 988
|||||||| |||| ||||| | || ||||| ||||||||||| ||||| ||| |||
Sbjct 1012 AATGTAATGTCTCTGAGGAACACGAGTGGAACGCTCGTTTGTATGCTCAGGATTGGATCA 1071
Query 989 AGGAATCAAAGGAAGGTTACAAGCAGTCAGACTTGGCGAGCCAATGCCATCACAGGTACA 1048
| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||
Sbjct 1072 AAGAATCAAAGGAAGGTTACAAGCAATCAGACTTGGCAAGCCAATGCCATCACAGATACA 1131
Query 1049 AGATTTACATAGAAGGGTCTGCATGGTCGGTGAGTGAGAAGTACATTCTGGCATGTGACT 1108
|||| || |||||||||||||||||||| || || |||||||||||| |||| |||||||
Sbjct 1132 AGATATATATAGAAGGGTCTGCATGGTCCGTTAGCGAGAAGTACATTTTGGCGTGTGACT 1191
Query 1109 CGGTGACAT-TGCTGGTCAAACCACATTACTACGATTTCTTCAC-ACGAGGTATGTTTCC 1166
| ||||| | |||| || ||||| |||||||| |||||||| || | ||||| || ||||
Sbjct 1192 CTGTGAC-TCTGCTAGTGAAACCTCATTACTATGATTTCTTTACTA-GAGGTTTGCTTCC 1249
Query 1167 AGGACACCATTATTGGCCCGTCATGGA-AG-ACGACAAATGCCGCTCCATCAAATTCGCC 1224
|| ||||||||||||||||| | || || |||| || |||||||||||||||||||||
Sbjct 1250 AGCTCACCATTATTGGCCCGT--TAGAGAGCACGATAAGTGCCGCTCCATCAAATTCGCC 1307
Query 1225 GTTGATTGGGGCAACT-TGCATATGCAAAAGGCACAAGACATCGGGAAGAAGGCAAGTGA 1283
||||||||||| |||| | || || ||||||||||| || || || ||| ||| || ||
Sbjct 1308 GTTGATTGGGGTAACTCT-CACATTCAAAAGGCACAGGATATTGGAAAGGCGGCCAGCGA 1366
Query 1284 GTTTGTGCAACAAGAACTTAAAATGGACTATGTGTACGATTACATGTTCCATCTCTTAAT 1343
||| | |||||||| || || |||||||||||||| || ||||||| |||||| ||||
Sbjct 1367 TTTTATCCAACAAGACCTCAAGATGGACTATGTGTATGACTACATGTACCATCTTTTAA- 1425
Query 1344 CC-AATACTCTAAACTCCTCCGGTTTAAACCCGAGATCCCTCAGAACT-CCACCGAGCTC 1401
|| ||||||| |||||||||| ||||||||||||||| || | ||| | || ||| |
Sbjct 1426 CCGAATACTCGAAACTCCTCCAGTTTAAACCCGAGATTCCGCGGAA-TGCCGTGGAGATT 1484
Query 1402 TGCTCAGAGGCAATGGCGTGCCCGAGG-GATGGAAATGAGCGGAAGTTTATGATGGAATC 1460
||||| || ||||||| || | |||| | ||| |||||||||||||| |||| |||||
Sbjct 1485 TGCTCGGAAACAATGGCATGTCTGAGGAG-TGGGAATGAGCGGAAGTTCATGACAGAATC 1543
Query 1461 ACTTGTGAAACGCCCAGCTGAGACCGGTCCCTGCGCCATGCCGCCTCCGTATGATCCAGC 1520
||| ||||| | || || || | ||||| || |||||||| ||||| |||||||| ||
Sbjct 1544 ACTCGTGAAGCAACCTGCGGATTCTGGTCCGTGTGCCATGCCTCCTCCTTATGATCCGGC 1603
Query 1521 -ATCGTTTTACTCGGTTTTGAAAAGGAGACAGAGTACGACTA-GTAGAATCGAACAGTGG 1578
| ||| |||| |||| |||| |||| ||||||||| | || | |||||| |||||||
Sbjct 1604 TA-CGTATTACGAGGTTGTGAAGAGGAAACAGAGTACTAATATG-AGAATCCTACAGTGG 1661
Query 1579 GAGA-GTAAGTACTGGAGGAAGCAGAA-CAAGACCGG 1613
|| | | ||||||||||| |||||||| ||| |||||
Sbjct 1662 GAAATG-AAGTACTGGAGTAAGCAGAATCAA-ACCGG 1696
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88152157020
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5