BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485258
Length=1627
Score E
Sequences producing significant alignments: (Bits) Value
AT3G49000.1 | Symbols: | RNA polymerase III subunit RPC82 fami... 2477 0.0
> AT3G49000.1 | Symbols: | RNA polymerase III subunit RPC82 family
protein | chr3:18162701-18165986 FORWARD LENGTH=1914
Length=1914
Score = 2477 bits (1341), Expect = 0.0
Identities = 1537/1631 (94%), Gaps = 15/1631 (1%)
Strand=Plus/Plus
Query 1 ATGGCTATGTCTGAGTTTGGCATTGTCTACGCCGTCCATATCATCACCGTCCAATTCGGC 60
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 203 ATGTCTATGTCTGAGTTTGGCATTGTCTACGCCATCCATATCATCACCGTCCAATTCGGC 262
Query 61 TCCGTCGTATCGAAAGTTTGCGAATGTCTTCTACGTAAAGGACCTCTTTCCTCACGAGAC 120
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 263 TCCGTCGTCTCGAAAGTTTGTGAATGTCTTCTACGTAAAGGACCTCTTTCCTCACGAGAC 322
Query 121 ATCTCTCGTTTAGCTGAATCAGACATCAATCATAACCAAGTTAAAGCTATTCTCTATCTC 180
||||||||||||||||||||||| ||||| |||||| ||||||||| |||||||||||||
Sbjct 323 ATCTCTCGTTTAGCTGAATCAGATATCAACCATAACAAAGTTAAAGATATTCTCTATCTC 382
Query 181 TTGATTCAGCACAATTGTGTTCAAGCTTTCTCTATTGAACCTCCTGATGGTTCCGAGAGC 240
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 383 TTGATTCAGCACAATTGTGTTCAAGCTTTCTCCATTGAACCTCCTGATGGTTCTGAGAGC 442
Query 241 AAAGCAATTGTACAGTATATTGTGCTGTTTAACAACATTTTGCATCGTGTGAGGTATAAC 300
||||| |||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 443 AAAGCTATTGTACAGTATATTGTGTTGTTTAACAACATTCTGCATCGTGTGAGGTATAAC 502
Query 301 AAGTTTTCGAGGCTTGTAAACGAAGAACTTGGCTCTGAGTGCGGTGCAGTTCTTGATGGT 360
|||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 503 AAGTTTTCGAGGATTGTAAACGAAGAACTTGACTCCAAGTGCGGTGCAGTTCTTGATGGT 562
Query 361 TTACTTAGTAACGGTAGGCTTACCTTGGGACAGCTGATTGAAAGAGACAGAGGTTCAGGA 420
||||||||||||||||||||||||||||||||| | ||||||||||| |||| |||||||
Sbjct 563 TTACTTAGTAACGGTAGGCTTACCTTGGGACAGTTTATTGAAAGAGATAGAGATTCAGGA 622
Query 421 AAAACGATAGGTTCTGAAGCAATTAGAGATTCTCTTCAGAAATTGGTTGCTGCCCGTTTT 480
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 623 AATACGATAGGTTCTGAAGCAATCAGAGATTCTCTTCAGAAATTGGTTGCTGCCCGTTTT 682
Query 481 GTTGAGCGCATTCCTTCTCCCGAACCTGTGCTTGGAAACAAAGAACAAGAGCCGGCAAAG 540
||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 683 GTTGAGCGCATTCCTTCTCCCGAACCTGTTCTTGGAAACAAAGAAAAAGAGCCGGCAAAG 742
Query 541 AAAAGAGGCGCTAAAGCTGCCAAGATTCTCAAAGAACCGGAAACCTTGGAGGAACGTGTT 600
| ||||||||||||||||||||||||||| |||||||| |||||||||||||||| |||
Sbjct 743 AGAAGAGGCGCTAAAGCTGCCAAGATTCTTAAAGAACCAGAAACCTTGGAGGAACAAGTT 802
Query 601 GTTGAAGCAGCAACTCCAGTTGACGCAATAAGGTTTCCACTTATATTCGAAGAAGATGCC 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 803 GTTGAAGCAGCAACTCCAGTTGACGCAATAAGGTTTCCACTTATATTCGAAGAAGATTCC 862
Query 661 AATTCATCTTTAGCAGATGACGATAGCAACATCACTGAGGGGAAGCGTAAACAACGTGAT 720
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 863 AATTCATCTTTAGCAGATGACAATAGCAACATCACTGAGGGGAAGCGTAAACAACGTGAT 922
Query 721 GTGGACTCATCAGATCCGAGCAGTGGAGTAATTTGGCGTCCTAATTTTGAGGAGTTCATC 780
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 923 GTGGACACATCAGATTCGAGCAGTGGAGTAATTTGGCGTCCTAATTTTGAGGAGTTCATC 982
Query 781 CACCGCCTTAGACATAAGGCGTGTGTGGAGATTGTGAAAGAGCGCAGGGATGAAGGATGT 840
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 983 CACCGCCTTAGACATAAGGCGTGTGTGGAGATAGTGAAAGAGCGCCGGGATGAAGGATGT 1042
Query 841 GCCATTGTCTTGAGGGCAATGTTAGAAGTAGGAAGATCACAGGAGAAGAAGGTGAAAACA 900
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1043 GCCATTGTCTTGAGGGCAATGTTAGAAGTAGGAAGATCGCAAGAGAAGAAGGTGAAAACA 1102
Query 901 GACAATTCGGCTCCAATGTCAATCGGTTCCATTTATGAAGAGGTTATAAAGACAGAAGCA 960
||||||||||||||||||||| | ||||||||||||||||| ||||| ||||||||||||
Sbjct 1103 GACAATTCGGCTCCAATGTCAGTTGGTTCCATTTATGAAGAAGTTATTAAGACAGAAGCA 1162
Query 961 GGTCGCACTATGTTACAAGAGCGAGTTGAAGCATGCCTTGACCAATTGAGTGCTACGTCT 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1163 GGTCGCACTATGTTACAAGAGCGAGTTGAAGCATGCCTTGACCAATTGAGTGCTACGTCT 1222
Query 1021 TCTTATCTACCAGCATTTGTG-ACAGAAATGAATGATTCATACATAGTTGATTTTAAATC 1079
||||||||||||||||||||| || ||| |||||||||||||||||||||||| ||||||
Sbjct 1223 TCTTATCTACCAGCATTTGTGAAC-GAAGTGAATGATTCATACATAGTTGATTATAAATC 1281
Query 1080 CATTATCAGCGTAGCACAGAAAGATGAGATAGAAGCAGTAGTTATGAGAAGATATGGGAA 1139
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 1282 CATTATCAGCGTAGCACAGAAAGATGAGATAGAGGCAGTAGTGATGAGAAGATATGGGAA 1341
Query 1140 AGAAGCTTTCAGAATGTTCAGATACTTATCACAGGAAGGGCGTTTTGTTGAGACCGATAA 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1342 AGAAGCTTTCAGAATGTTCAGATACTTATCACAGGAAGGGCGTTTTGTTGAGACCGATAA 1401
Query 1200 GATTGCTGATGCCGCGCTGACTGAAAAGAAAGACACACCGCAATTCCTTTTGAAGATGTG 1259
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1402 GATTGCTGATGCCGCGCTGACTGAAAAGAAAGATACACCGCAATTCCTTTTAAAGATGTG 1461
Query 1260 GAAAGACGGATACTTACATATGCAGAAATTGGCGATCACGGGTACG--TATGTA--C-C- 1313
|||||||||||||||||||||||||||||||||| |||| | | || |||||| | |
Sbjct 1462 GAAAGACGGATACTTACATATGCAGAAATTGGCGGTCACAGCTCCGGGTATGTATACACC 1521
Query 1314 GTTTCTGTTGTGGAAGGTAAACAAGTTGATTGTGACTAGGCAAATGTTAGATGAAATGTA 1373
|||||||||||||||||||||||||||||||||||| | |||||||| ||||| |||||
Sbjct 1522 GTTTCTGTTGTGGAAGGTAAACAAGTTGATTGTGACAACTCAAATGTTGGATGAGATGTA 1581
Query 1374 TCATGCTTCACTTAACTTGAATCTCAGGTTGGCTCATGAGTTAGAATCCGAAAAAGAGTT 1433
||||| || |||||||||| ||| |||||||| |||||||||||| |||||||||||||
Sbjct 1582 CCATGCGTCCCTTAACTTGAGTCTTAGGTTGGCCCATGAGTTAGAAGCCGAAAAAGAGTT 1641
Query 1434 GCTGATGTTGCCATCAGATAAACTGGAAGGACCATTAAAGGAGAGAGTGATCAAGGTCAG 1493
|||| ||||||||| ||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 1642 GCTGTTGTTGCCATTAGATAAACTGGAAGGACCATTAAAGGAGAGACTGAAAAAGGTCAA 1701
Query 1494 AGCCAAGAGGCTGTTACTCTCTTCCACTATGTTTAAACTTGATGATGCGATTATGCTATT 1553
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1702 AGCCAAGAGGCTGTTACTCTCTTCCACTATGTTTAAACTTGATGATGCCATTATGCTTTT 1761
Query 1554 TCACGACTTTTAAACTCTTAAATTGAAAATCATTTCTTTATTTTGTTTTAGTCGATTTAG 1613
||| ||||||||||||| || ||| |||| | || |||| |||| ||||||||||
Sbjct 1762 TCATGACTTTTAAACTCATACATTCAAAA--A---CTA-ATTTC-TTTTGGTCGATTTAG 1814
Query 1614 TTCACATTGTC 1624
|||||||||||
Sbjct 1815 TTCACATTGTC 1825
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80371072545
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5