BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485259
Length=2074
Score E
Sequences producing significant alignments: (Bits) Value
AT3G49050.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 3153 0.0
> AT3G49050.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr3:18180968-18183752 FORWARD LENGTH=2103
Length=2103
Score = 3153 bits (1707), Expect = 0.0
Identities = 1987/2114 (94%), Gaps = 51/2114 (2%)
Strand=Plus/Plus
Query 1 CAAAGTAGCTCTGCAACTGCAAATTTAACCCCAAAGTCACTGCCACAAATAAAGAAAGCA 60
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1 CAAAGTAGCTCTGCAACTGCAAGTTTAACCCCAAAGTCACTGCCACAAATAAAGAAAGCA 60
Query 61 AAGCTAACACGAGTCCGGCGAGTTTTGAATCCTCCTTCTATGGCATGATTTCCATTTCTT 120
|||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |
Sbjct 61 AAGCTAACACGAGTCCAGCGAGTTTTGAATCTTCCTTCTATGGCATGATTTCCATTTCCT 120
Query 121 CTTCCGTTTTCCACGGGAATACACTTCCCTTCTCTTCTTTATCTTCTCTCAAATTCTTCA 180
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CTTCCGTTTTCCACGGGAAGACACTTCCCTTCTCTTCTTTATCTTCTCTCAAATTCTTCA 180
Query 181 GTTCCTTCTCGAAATCATTGATCTTGATTTGAGCTTAAGAGAAGAGAAG-AGAAAA---A 236
|||||||||||||||||||||||||||||||||||| |||||||||||| | |||| |
Sbjct 181 GTTCCTTCTCGAAATCATTGATCTTGATTTGAGCTTTAGAGAAGAGAAGAACAAAATTCA 240
Query 237 T--TAG----T-GTTTCAGTAGTGAGATCTAATTCTCTTCCCATGTTTTTCTCTATAGAG 289
| || | | | |||||||||||||||| |||||||||||||||| |||||| ||
Sbjct 241 TAAGAGAACATAGAATAAGTAGTGAGATCTAATCCTCTTCCCATGTTTTTGTCTATAAAG 300
Query 290 TAGCAATTAGGACTTCAATCTTCAATTTCATTACCATT-ACATTGTTTCCGATTCACAAA 348
|||||||||| ||||||||||||||||||||| ||||| ||||||||||| |||||||||
Sbjct 301 TAGCAATTAGAACTTCAATCTTCAATTTCATTTCCATTAACATTGTTTCCCATTCACAAA 360
Query 349 GTTGACttttttttCTTTGGTTTTAGCTTCAGTCCAAGATTCTTCAGTTGGGTGTACTAA 408
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 361 GTTGACTTTTTTTTCTTTGGTTTTAGCTTCAGTTCAAGATTCTTCAGTTGGGTGTACTAA 420
Query 409 AGTCTTGAAATTTCTTTGTTTAAACATTAAAAGTTTATGTTTTGATCGTTA-G-GTG-TG 465
||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||
Sbjct 421 AGTTTTGAAATTTCTTTGTTTAAACATTAAAAGTTTATGTTTTGATCGTTAGGTGTGCTG 480
Query 466 CTTCATTGGTCTATGATGATGAA--TG-TGTTATAATTCTGTATCTATTCATGTCGATTC 522
||||||||||||||||||||||| || |||||||| ||||||||| |||||||||||||
Sbjct 481 CTTCATTGGTCTATGATGATGAATGTGTTGTTATAACTCTGTATCTGTTCATGTCGATTC 540
Query 523 TATGTGGTTGTTGCCCTCTTTTAGAATGTGTTTACTGTCTTGGTTGTGCTCGTTGGGGTT 582
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 541 TATGTGGTTGTTGCCCTCTTTTAGAATGTGTTTACTGTCTTGGTTGTGCACGTTGGGGTT 600
Query 583 ATAAACGTTGCCTTTACACGGCTGGTCACGACAGTGAAGATTGGGGGCTTGCAACAACTG 642
|||||||||| ||||| || |||||||||||||||||||||||||| |||||||||||||
Sbjct 601 ATAAACGTTGTCTTTATACTGCTGGTCACGACAGTGAAGATTGGGGACTTGCAACAACTG 660
Query 643 ATGAATTCGAACCAGTTCCTCGGTTTTGTCGTTATATTTTAGCTGTTTACGAGGATGATA 702
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 ATGAATTCGAACCGGTTCCTCGGTTTTGTCGTTATATTTTAGCTGTTTACGAGGATGATA 720
Query 703 TTCGAAATCCTTTATGGGAGCCTCCAGAAGGATATGGGATTAACCCTGATTGGTTGCTTC 762
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TTCGAAATCCTTTGTGGGAGCCTCCAGAAGGATATGGGATTAACCCTGATTGGTTGCTTC 780
Query 763 TAAAGAAGACTTATGAAGATACTCAGGGTCGTGCTCCAGCTTATATATTGTATCTTGATC 822
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 781 TAAAGAAGACTTATGAAGACACTCAGGGTCGTGCTCCAGCTTATATATTGTATCTTGATC 840
Query 823 ATGTTCATCAAGATATAGTTGTTGCGATCCGTGGGCTGAATTTGGCGAAAGAGAGTGATT 882
||||||||||||||||||||||||| ||||| ||| |||||||||| || ||||||||||
Sbjct 841 ATGTTCATCAAGATATAGTTGTTGCAATCCGGGGGTTGAATTTGGCTAAGGAGAGTGATT 900
Query 883 ATGCAATGCTTTTGGATAATAAGCTTGGTGAAAGGAAATTTGATGGTGGTTATGTGCACA 942
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 901 ATGCAATGCTTTTGGATAATAAGCTTGGTGAAAGGAAGTTTGATGGTGGTTATGTGCACA 960
Query 943 ACGGGCTGGTGAAGTCTGCGGGTTATGTGTTAGATGAGGAATGTAAAGTTTTGAAAGAAT 1002
||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 961 ACGGGCTTGTGAAGTCTGCTGGTTATGTGTTAGATGAGGAATGTAAAGTTTTGAAAGAGT 1020
Query 1003 TGGTGAAAAAGTATCCGAGTTATACTCTGACTTTTGCTGGACATTCACTTGGGTCTGGTG 1062
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 TGGTGAAAAAGTATCCGAGTTATACTCTGACTTTTGCTGGACATTCACTTGGGTCTGGTG 1080
Query 1063 TAGCTACAATGTTGGCTTTGTTAGTGGTTCGGCATCCGGAAAGATTGGGGAACATTGATA 1122
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 1081 TAGCTACAATGTTGGCTTTGTTAGTGGTTCGACATCCGGAAAGATTGGGGAATATTGATA 1140
Query 1123 GAAAGAGAGTTAGGTGTTTCGCTATTGCGCCTGCTAGGTGTATATCATTGAATTTGGCTG 1182
|||||||||||||||||||||||||||||||||| |||||||| || |||||||||||||
Sbjct 1141 GAAAGAGAGTTAGGTGTTTCGCTATTGCGCCTGCGAGGTGTATGTCGTTGAATTTGGCTG 1200
Query 1183 TTAGATATGCAGATGTGATCAACTCTGTCATACTTCAGGATGATTTCTTGCCCAGGACAG 1242
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 1201 TTAGATATGCAGATGTGATTAACTCTGTCATACTTCAGGATGATTTCTTGCCTAGGACAG 1260
Query 1243 CTACGCCTTTAGAAGACATATTCAAGTCTGTGTTCTGTTTGCCATGTCTGCTATGCATAA 1302
|||| ||| |||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 1261 CTACACCTCTAGAAGACATATTCAAGTCTGTATTCTGTTTGCCATGTTTGCTATGCATAA 1320
Query 1303 GGTGCATGAAGGATACATGTGTTCCAGAGCAAAAGATGCTCAAAGATCCTAGACGGCTTT 1362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 GGTGCATGAAGGATACATGTGTTCCAGAGCAAAAGATGCTCAAAGATCCTAGACGGCTTT 1380
Query 1363 ATGCACCTGGTCGCATGTATCACATCGTCGAAAGAAAGCCTTGCAGATTAGGAAGATATC 1422
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1381 ATGCTCCTGGTCGCATGTATCACATCGTCGAAAGAAAGCCTTGCAGATTAGGAAGATATC 1440
Query 1423 CTCCGGTGGTGAAGACAGCAGTGCCAGTAGACGGAAGGTTCGAACACATTGTTCTTTCTT 1482
||||||| ||||||||||||||||| ||||| ||||| ||||||||||||||||||||||
Sbjct 1441 CTCCGGTTGTGAAGACAGCAGTGCCGGTAGATGGAAGATTCGAACACATTGTTCTTTCTT 1500
Query 1483 GTAACGCAACTTCAGACCACGCCATCATCTGGATCGAACGAGAAGCTCAGAGAGCTCTCA 1542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1501 GTAACGCAACTTCAGACCACGCCATCATCTGGATCGAACGAGAAGCTCAGAGAGCTCTCA 1560
Query 1543 AACTAATGATGGAGAAGGAAAAGAAAATGGAGATTCCAGAGAAGCAAAGGATGGAGAGGC 1602
| |||||||||||||| || |||||||||||||| || ||||||||||||||||||||||
Sbjct 1561 ACCTAATGATGGAGAATGAGAAGAAAATGGAGATCCCGGAGAAGCAAAGGATGGAGAGGC 1620
Query 1603 AAGAATCATTAGCCAGAGAGCACAACTTGGAGTATAGAGCAGCGTTAAGACGAGCAGTAA 1662
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1621 AAGAATCATTAGCCAGAGAGCACAACTTGGAGTACAGAGCAGCGTTAAGACGAGCAGTAA 1680
Query 1663 CGTTAGATGTTCCTCACGCGGAGTCAATGGCCTCTGAGTACGGAACATTCAACAAAACTC 1722
|||||||||| |||||||| ||||||||||||| |||||||||||||||| |||||||||
Sbjct 1681 CGTTAGATGTACCTCACGCAGAGTCAATGGCCTATGAGTACGGAACATTCGACAAAACTC 1740
Query 1723 aagaagacgaaaccgaagaagaagaagaaacagaggaagaagaagaagaagaaaaagaag 1782
||||||||||||||||||||||||||| | || || | || ||||||||| ||||
Sbjct 1741 AAGAAGACGAAACCGAAGAAGAAGAAGTA---GA--AACA-GAGGAAGAAGAA---GAAG 1791
Query 1783 aaaCAGACTTGATTGCACCAATGGTGGGTGAATCATCATCATCATCTTCTGTTCGACCAA 1842
| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1792 ACACAGACTCGATTGCACCAATGGTGGGTGAATCATCATCATCATCTTCTGTTAAACCAA 1851
Query 1843 CTTACAGGAAGAA-ACGGAACCGTAGAGTTAGTTGGGACGAACTAATCGAACATCTCTTT 1901
||||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1852 CTTACAGGAT-AAGACGAAACCGTAGAGTTAGTTGGGACGAACTAATCGAACATCTCTTT 1910
Query 1902 GAACGAGACGAGTCTGGTAACTTGACATTCGAGAAATCAGATTTGCCTCAATGATCAAGA 1961
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1911 GAACGAGACGAGTCTGGTAACTTGACATTCGAGAAATCAGATTTACCTCAATGATCAAGA 1970
Query 1962 TTCAAGTTCT-TA-T------------GTGAATGATATTGTATTGTGTAAAAA---CAGT 2004
|||| ||||| || | |||||||||||||||||||||||||| ||||
Sbjct 1971 TTCATGTTCTCTACTCAATCCATATATGTGAATGATATTGTATTGTGTAAAAAAAACAGT 2030
Query 2005 T---CATTACAATCATCATA-ATACAGACCACATTGGTCTGAGTTTTATTACAGAGGATT 2060
| |||||||||||||||| | ||||||||||||||||||||||||||||||||||| |
Sbjct 2031 TGTTCATTACAATCATCATACA-ACAGACCACATTGGTCTGAGTTTTATTACAGAGGAAT 2089
Query 2061 TCTCATAAACTTCC 2074
||||||||||||||
Sbjct 2090 TCTCATAAACTTCC 2103
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102810716160
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5