BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485260
Length=2562
Score E
Sequences producing significant alignments: (Bits) Value
AT3G49060.1 | Symbols: | U-box domain-containing protein kinas... 4002 0.0
> AT3G49060.1 | Symbols: | U-box domain-containing protein kinase
family protein | chr3:18187214-18191935 REVERSE LENGTH=2647
Length=2647
Score = 4002 bits (2167), Expect = 0.0
Identities = 2436/2568 (95%), Gaps = 10/2568 (0%)
Strand=Plus/Plus
Query 1 AAAGTTATCAAATCTAGAGATAGAGAGAGTGAGAAAAGGCGAAAAATATGGGAGAAATCG 60
|||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||
Sbjct 12 AAAGTTATCAAATCTAGAGATAGAGAGAGTGA-AGAGGGCGAAAAATATGGGAGAAATCG 70
Query 61 GTGGAGAAGAACTGGTCTTAGATGTGGATGAGACGATCTTCGTCGCGGTTGCGGAAGATG 120
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 71 GTGGAGAAGAACTGGTCTTAGATGTGGATGAGACGATTTTCGTCGCGGTGGCGGAAGATG 130
Query 121 TGGAGAGAAGCAAAACCACGGTGTTATGGGCGGCGCGTAACTTTTCCGGCAAGAAGATTT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 131 TGGAGAGAAGCAAAACCACGGTGTTATGGGCGGCGCGTAACTTTTCCGGCAAGAAGATTT 190
Query 181 GCTTGCTTTATGTTCATCGAACTGCTCGCGCTGCCTCCTGGACGCACAAGAAACTTGTCG 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 191 GCTTGCTTTATGTTCATCGAACTGCTCGCGCTGCCTCCTGGACGCACAAGAAACTTGTTG 250
Query 241 GTGGTAGCTTTAAAAAACATGATGTCAAGGTGATTGAGCGAGTTGAGAAACCCAAAGTGG 300
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 251 GTGGTAGCTTTAAAAAGCATGATGTCAAGGTGATTGAGCGAGTTGAGAAACCCAAAGTGG 310
Query 301 ATGAGCTGATGAATTCTTATCTTCATCTTTTATCTGAAACTGAGGTTCAAACAGATAAAC 360
|||| ||||||||||||||||| || |||||||||||||||||| |||||||||||||||
Sbjct 311 ATGAACTGATGAATTCTTATCTCCAACTTTTATCTGAAACTGAGATTCAAACAGATAAAC 370
Query 361 TTTGCATTGCGGGGCAAAATATTGAGGAAGGTATCTTAGAACTAATTGCTCGCCACAAAA 420
|||||||||||||||||||||| |||||| ||||| |||||||||||||||| |||||||
Sbjct 371 TTTGCATTGCGGGGCAAAATATCGAGGAATGTATCGTAGAACTAATTGCTCGGCACAAAA 430
Query 421 TTAAGTGGTTAGTCATGGGAGCTGCATCAGATAAGCATTACTCATGGAAAATGACGGATC 480
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 431 TTAAGTGGTTAGTAATGGGAGCTGCATCAGATAAGCATTACTCATGGAAAATGACGGATC 490
Query 481 TAAAGTCCAAGAAAGCCATATTCGTTTGCAAAAAAGCTCCTGATTCCTGCCATATCTGGT 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 491 TAAAGTCCAAGAAAGCCATATTCGTTTGCAAAAAAGCTCCTGATTCCTGCCATATTTGGT 550
Query 541 TTCTGTGTAAAGGTTACCTTATCTTTACAAGGGCGTCAAATGAGGATAGTAATAACAGAC 600
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 551 TTCTCTGTAAAGGTTACCTTATCTTTACAAGGGCGTCAAATGACGATAGTAATAACAGAC 610
Query 601 AAACGATGCCGCCCCTAGTACAGCTGGATTCAGATAATGAGACAAGGAAATCAGAAAAAT 660
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 611 AAACAATGCCGCCCCTAGTACAGCTGGATTCAGATAACGAGACAAGGAAATCAGAAAAAT 670
Query 661 TGGAATCGTCTTATATGAGGAGAAGATTAAGATATTGGCGCAGCCTCCTTGAACAAGATG 720
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 671 TGGAATCTTCTTATATGAGGAGAAGATTAAGATATTGGCGCAGCCTCCTTGAACAAGATG 730
Query 721 GTGAGAAAGACACAGGTCAATTGGAGAGAGAAAAGGTAGAACCAAGAGCAACTCCACATT 780
|||||||||| ||||||||| ||||||||||||||||||||||||||||| |||| | ||
Sbjct 731 GTGAGAAAGATACAGGTCAACTGGAGAGAGAAAAGGTAGAACCAAGAGCACCTCCTCTTT 790
Query 781 TTTCTTCAGGTTCGAGTTCTTCCTTTGGTGAGCCGGTTGGTCCAGAGCCTATTAGCCCAG 840
|||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 791 TTTCATCAGGTTCGAGTTCTTCCTTTGGAGAGCCGGTTGGTCCAGAGCCGGTTAGCCCAG 850
Query 841 AATTGGTTGACTCGGATACACTAACTACCTCAAATGTTAAGGAAAAAGAGCGTGAAGGAG 900
||||||||||||| |||||||||| ||||||||||||| ||||||||||||||||||| |
Sbjct 851 AATTGGTTGACTCAGATACACTAAATACCTCAAATGTTGAGGAAAAAGAGCGTGAAGGGG 910
Query 901 ATGTTGCACGCAAAGTCCATAGGTATGATAAAGCCATGCATGATATTGGCCAATCAGAGA 960
|||| || |||||||| |||||||||||||||||||||||||||||||| |||||||| |
Sbjct 911 ATGTAGCGCGCAAAGTTCATAGGTATGATAAAGCCATGCATGATATTGGACAATCAGATA 970
Query 961 GAACGGTATATGGGGAAACTGGGAAAAATTGGAAAGAGGATGCCAGTACCACAGAGGCTT 1020
||||||| |||||||| |||||||||| ||| |||||||||||||||| ||||||||||
Sbjct 971 GAACGGTTTATGGGGAGGCTGGGAAAAAATGGGAAGAGGATGCCAGTACAACAGAGGCTT 1030
Query 1021 TATGCAAGGCTAGAGCTTTGGAAGGCTTATGCATTAAGGAGTCGAGCCAAAGAAAGAGAT 1080
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1031 TATGCAAGGCTAAAGCTTTGGAAGGCTTATGCATTAAGGAGTCGAGCCAAAGAAAGAGAT 1090
Query 1081 TGGAGGAGTTGCTGGAAAAGGAAAAGCATGAAGTAAAAATGGTAATAGAGCAGAACAACG 1140
||||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||| |
Sbjct 1091 TGGAGGAATTGCTGGAAAAGGAAAAGCTTGAAGTAAAAATGGTAATAGAGCAAAACAATG 1150
Query 1141 GATTCATGAAAGAACTTCAAATGGTTCAGGGTCAGAATCTTAAGTTGGAGAGCCAGATAA 1200
||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |
Sbjct 1151 GATTCATGAAAGAACTTCAGATGGTTCAGGGTCGGAATCTTAAGTTGGAGAGCCAGATGA 1210
Query 1201 GGAAACTGCAAGACTTGGAAAAAGAACATGGTGAGAAATTCGATACGGCTATGGAGCTCT 1260
||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 1211 GGAAACTACAAGACTTGGAAAAAGAACATGGTGAGAAATTTGATACAGCTATGGAGCTCT 1270
Query 1261 TGAAAAGTTTTAGGCAGAAAAGGGATGAGATCCGGATCGATCATGAGAACGCAGTAAAGG 1320
|||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1271 TGAAAAGTTTCAGACAGAAAAGGGATGAGATCCGGATCGATCACGAGAACGCAGTAAAGG 1330
Query 1321 AAGTAAACGCACTGAGAAGGCTGATTAAAGGAGAGACTGGAGAGTTTTCTGGGTCAGAAA 1380
|||| |||||||||||||| ||| ||||||||||||| ||||||| ||||||||| ||||
Sbjct 1331 AAGTGAACGCACTGAGAAGACTGGTTAAAGGAGAGACCGGAGAGTCTTCTGGGTCGGAAA 1390
Query 1381 TGCTCGAGTACTCTTTTATGGAAATCAATGAGGCTACTAATGAATTTGATCCATCATGGA 1440
|||| || |||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 1391 TGCTTGACTACTCTTTTATGGAAATCAATGAGGCTACTAACGAATTTGATCCATCTTGGA 1450
Query 1441 AACTTGGAGAAGGCAAATACGGAAGTGTCTACAAAGGGAATCTTCAACATCTTCAAGTTG 1500
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1451 AACTTGGAGAAGGCAAATACGGAAGTGTCTATAAAGGGAATCTTCAACATCTTCAAGTTG 1510
Query 1501 CAGTAAAGATGTTGCCCTCATATGGATCCCTGAATCACTTTGAGTTTGAGCGTCGGGTGG 1560
| ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1511 CTGTAAAGATGTTACCCTCATATGGATCCTTGAATCACTTTGAGTTTGAGCGTCGGGTGG 1570
Query 1561 AAATTTTAAGCAGGGTGAGGCATCCAAATCTGGTAACACTGATGGGTGCTTGTCCAGAGT 1620
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1571 AGATTTTAAGCAGGGTAAGGCATCCAAATCTGGTAACACTGATGGGTGCTTGTCCAGAGT 1630
Query 1621 CTCGGTCTCTCATTTATCAATATATTCCTAACGGAAGCCTTGAAGACTGCTTTTCATCTG 1680
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1631 CTCGGTCTCTCATTTATCAATATATTCCTAACGGAAGCCTCGAAGACTGCTTTTCATCTG 1690
Query 1681 AGAACAACGTGCCTGCACTTTCATGGGAATCTCGGATCAGGATTGCCTCTGAGATATGCT 1740
| |||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1691 AAAACAACGTTCCTGCTCTTTCATGGGAATCTCGGATAAGGATTGCCTCTGAGATATGCT 1750
Query 1741 CTGCTCTCCTGTTTCTTCATACAAACATTCCTTGCATCATTCATGGAAACCTAAAACCGT 1800
|||| || |||||||||||| |||||||||| ||||||||||||||||||||||| ||||
Sbjct 1751 CTGCCCTTCTGTTTCTTCATTCAAACATTCCGTGCATCATTCATGGAAACCTAAAGCCGT 1810
Query 1801 CTAAGATTCTCCTGGATTCCAATCTCGTCACCAAAGTCAACGACTACGGGATCTCTCAGC 1860
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1811 CTAAGATTCTCCTGGATTCCAATCTCGTCACCAAAATCAACGACTACGGGATCTCTCAGC 1870
Query 1861 TGATCCCGATTGACGGATTCGACAAATCTGATCCTCACGTAGATCCACATTACTTTGTTT 1920
||||||||||||||||||| |||||||| |||||||| ||||||||||||||||| ||||
Sbjct 1871 TGATCCCGATTGACGGATTAGACAAATCAGATCCTCATGTAGATCCACATTACTTCGTTT 1930
Query 1921 CCAGGGAAATGACGCTGGAATCAGATATATACGCGTTTGGGATCATTCTCCTTCAGCTTC 1980
| || ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1931 CAAGAGAAATGACGCTAGAATCAGATATATACGCGTTTGGGATCATTCTCCTGCAGCTTC 1990
Query 1981 TCACCAGAAGACCTGTATCTGGCATACTGAGAGACGTCAAATGCGCTCTGGAGAACGATA 2040
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1991 TCACCAGAAGGCCTGTATCTGGCATACTGAGAGATGTCAAATGCGCTCTGGAGAACGATA 2050
Query 2041 ACATCAGTGCGGTTTTGGATAATTCAGCAGGAGACTGGCCAATTGCACGAGGCAAAAAGC 2100
|||||||||||||| |||||||||||||||||||||||||| | |||||||| |||||||
Sbjct 2051 ACATCAGTGCGGTTCTGGATAATTCAGCAGGAGACTGGCCAGTCGCACGAGGTAAAAAGC 2110
Query 2101 TAGCTAATGTAGCCATCCGTTGTTGTAAGAAAAACCCAATGAATCGACCAGACTTAGCAG 2160
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 2111 TAGCTAATGTAGCCATCCGTTGCTGTAAGAAAAACCCGATGAATCGACCAGACTTAGCAG 2170
Query 2161 TGGTTCTACGGTTTATAGATCGAATGAAAGCCCCAGAAGTGCCTTCATCAGA-A-A-CAT 2217
||||||||||||||||||||||||||||||| |||||||| ||||||||||| | | |||
Sbjct 2171 TGGTTCTACGGTTTATAGATCGAATGAAAGCACCAGAAGTTCCTTCATCAGAGACATCAT 2230
Query 2218 CATACTC-AGACCAAAAAGTTCCACGCCGCCCTCCTTCTCATTACCTCTGCCCTATTTTT 2276
||||| | | ||||||| ||||||||||| ||||||||||||||||||||||| |||||
Sbjct 2231 CATACGCCA-ACCAAAACGTTCCACGCCGGCCTCCTTCTCATTACCTCTGCCCCATTTTC 2289
Query 2277 CAGGAAGTGATGAAAGATCCTTTGATAGCAGCAGATGGGTTCACTTACGAAGCAGAAGCG 2336
||||||||||||||||||||| ||||||||||||| || |||||||||||||||||||||
Sbjct 2290 CAGGAAGTGATGAAAGATCCTCTGATAGCAGCAGACGGATTCACTTACGAAGCAGAAGCG 2349
Query 2337 ATTAGAGAATGGTTAGCAAATGGACACGATACGTCGCCAATGACAAACTTGAAGATGGAA 2396
|||||||| |||||||| |||||||||||||||||||||||||||||| |||| ||||||
Sbjct 2350 ATTAGAGAGTGGTTAGCGAATGGACACGATACGTCGCCAATGACAAACCTGAAAATGGAA 2409
Query 2397 GATTGCAATCTCATACCTAATCACGCTCTTCATCTAGCTATCCAAGATTGGCAAAACCAA 2456
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2410 GATTGCAACCTCATACCTAATCACGCTCTTCATCTAGCTATCCAAGATTGGCAAAACCAA 2469
Query 2457 TGGTGATTTACTTTTGCCTTTCTATTCA--GACAACAATATTGCTATTTTTAACTCCCAA 2514
|||||||||||||||||||| || || | ||||||||||||||||||||||||||||||
Sbjct 2470 TGGTGATTTACTTTTGCCTT-CT-TTGAAAGACAACAATATTGCTATTTTTAACTCCCAA 2527
Query 2515 tttttttAGATTGTCACTTTGTAAATTGACCCCTAAACGTATGGAAAA 2562
|| |||||||||||||||||||||||| ||||||||| ||||| ||||
Sbjct 2528 TTATTTTAGATTGTCACTTTGTAAATTTACCCCTAAAGGTATGAAAAA 2575
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 127173200505
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5