BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485272
Length=3784
Score E
Sequences producing significant alignments: (Bits) Value
AT3G49142.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 3151 0.0
AT3G49140.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 1648 0.0
AT5G24060.2 | Symbols: | Pentatricopeptide repeat (PPR) superf... 475 1e-132
> AT3G49142.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:18215788-18217848 REVERSE LENGTH=2061
Length=2061
Score = 3151 bits (1706), Expect = 0.0
Identities = 1937/2050 (94%), Gaps = 9/2050 (0%)
Strand=Plus/Plus
Query 1 ATGAAACGCATCAATGTCGATCTCCGTCTTCTCCATTTTCCGGAATTCAGACAATTTCAA 60
||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||||
Sbjct 1 ATGAAACGCATCAATGTCGATCTCCATCTTCTCCATTTTCCGAAATTCAGAAAATTTCAA 60
Query 61 ACTCGAAAAGTAACTTCTTCCGTACCCAACCTGGAACTTGATCaaaaaaaTTCACCAAAG 120
| ||||||||| |||| ||| ||||||| ||||||| |||| | ||| |||||| ||
Sbjct 61 TCACGAAAAGTATCTTCGTCCCTACCCAAATTGGAACTCGATC--AGAAA-TCACCACAG 117
Query 121 GAGACAGCTTTCATGCTTGGTCAGGTACTTGACACTTACCCAGATCTCAAAACGCTTAGA 180
||||||| |||| | |||||||||||||||||||||||||||||| ||| ||| ||||||
Sbjct 118 GAGACAGTTTTCTTACTTGGTCAGGTACTTGACACTTACCCAGATATCAGAACACTTAGA 177
Query 181 ACAGTCCACTCCAGAATCATTTCAGAAGATCTACGCTACAATTCTTCTCTAGGCGTTAAA 240
||||||||||| |||||||||| ||||||||||| | ||||||||| | || ||||||
Sbjct 178 ACAGTCCACTCAAGAATCATTTTGGAAGATCTACGTTGTAATTCTTCTTTGGGTGTTAAA 237
Query 241 CTTATGAGAGCTTATGCTTCTCTAAAAGATGTGGCAACAGCACGCAAGGTGTTCGACGAA 300
|||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 238 CTTATGAGAGCTTATGCTTCTCTAAAAGATGTAGCGTCAGCACGCAAGGTGTTCGACGAA 297
Query 301 ATTCCTGAGAGAAACGTAATTATCATTAATGTTATGATCAGAAGCTATGTTAATAATGGG 360
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 298 ATTCCTGAGAGAAACGTAATTATCATTAATGTTATGATTAGAAGCTATGTGAATAATGGG 357
Query 361 TTTTACCGTGAAGGTATTCAAGTGTTTGGGACGATGTGTAGTTGTCATGTTAAACCTGAT 420
|||||| |||||||| || |||||||||||||||||||| ||||| |||||| |||||||
Sbjct 358 TTTTACGGTGAAGGTGTTAAAGTGTTTGGGACGATGTGTGGTTGTAATGTTAGACCTGAT 417
Query 421 CATTACACTTTCCCGTGTGTTCTAAAGGCATGTTCTTGCTCTGGGAATATTGTCATTGGG 480
||||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct 418 CATTATACTTTCCCGTGTGTTCTAAAGGCGTGTTCTTGCTCTGGGACTATTGTCATTGGG 477
Query 481 AAGAAAATTCATGGGTCTGCTACAAAAGTTGGGCTCTCTTCGACTTTGTTTGTTGGGAAT 540
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 AGGAAAATTCATGGGTCTGCTACAAAAGTTGGGCTCTCTTCGACTTTGTTTGTTGGGAAT 537
Query 541 GGTTTAGTTTCTATGTATGGAAAGTGTGGATTTTTATCTGAAGCAAGGCTTGTACTTGAT 600
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 GGTTTAGTTTCTATGTATGGAAAGTGTGGATTTTTATCTGAAGCAAGGCTTGTACTTGAC 597
Query 601 GAGATGTCTAGGAGAGATGTGGTCTCTTGGAACTCGTTAGTTGCTGGGTATGCGCAAAAT 660
||||||||||||||||||||||| |||||||||||||| |||| ||||||||||||||||
Sbjct 598 GAGATGTCTAGGAGAGATGTGGTGTCTTGGAACTCGTTGGTTGTTGGGTATGCGCAAAAT 657
Query 661 CAGAGATTTGATGATGCTTTGGAAGTTTGTAGGGAAATGGAATCTGTGAAGATAAGCCAC 720
||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 658 CAGAGATTTGATGATGCTTTGGAGGTTTGTAGGGAAATGGAGTCTGTGAAGATAAGCCAT 717
Query 721 GATGCTGGCACCATGGCTAGTCTGTTACCAGCAGTGAGTAACACTACAACTGAAAACGTT 780
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 GATGCTGGTACGATGGCTAGTCTGTTACCAGCAGTGAGTAACACTACAACTGAAAACGTT 777
Query 781 ATGTATGTTAAAGATATGTTTTTTAAAATGGGGAAAAAGAGTTTGGTTTCATGGAATGTG 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 ATGTATGTTAAAGATATGTTTTTTAAAATGGGGAAAAAGAGTTTGGTTTCATGGAATGTG 837
Query 841 ATGATCGGTGTGTATATGAAAAACGCGATGCCTGTTGAAGCCGTGGAGTTGTATTCCGGA 900
||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||| ||
Sbjct 838 ATGATCGGTGTGTATATGAAAAATGCGATGCCTGTTGAAGCTGTGGAATTGTATTCCCGA 897
Query 901 ATGGAGGCTGATGGGTTCGAACCTGATGCAGTCTCGATCACAAGTGTGTTACCTGCTTGT 960
||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 898 ATGGAGGCTGATGGGTTTGAACCTGATGCAGTCTCAATCACAAGTGTATTACCTGCTTGT 957
Query 961 GGAGATACATCTGCTCTGTCTCTTGGTAAGAAAATCCATGGATACATTGAGAGAAAGAAG 1020
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 958 GGAGATACCTCTGCTCTGTCTCTTGGTAAGAAAATCCATGGATACATTGAGAGGAAGAAG 1017
Query 1021 CTGATACCGAATCTGTTGTTAGAGAATGCACTGATTGATATGTATGCGAAATGCGGATGT 1080
|||||||| |||||||||||||||||||||||||| || |||||||| ||||||||||||
Sbjct 1018 CTGATACCAAATCTGTTGTTAGAGAATGCACTGATCGACATGTATGCAAAATGCGGATGT 1077
Query 1081 TTAGACAGAGCGAGAGATGTGTTTGAGAACATGAAGTCACGTGATGTTGTGTCTTGGACA 1140
||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 TTAGAGAAAGCTAGAGATGTGTTTGAGAACATGAAGTCACGTGATGTTGTGTCTTGGACA 1137
Query 1141 GCTATGATTTCAGCTTATGGATTCAGCGGAAGAGGCTGTGACGCAGTGGCATTGTTTTCG 1200
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1138 GCTATGATTTCAGCTTATGGATTCAGCGGACGAGGCTGTGACGCAGTGGCATTGTTTTCG 1197
Query 1201 AAAATGCAAGATTCGGGTCTCGTCCCTGATTCAATTGCGTTTGTCACAACGCTCGCTGCT 1260
||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1198 AAATTGCAAGATTCGGGTCTCGTCCCTGATTCAATTGCGTTTGTCACAACGCTTGCTGCT 1257
Query 1261 TGTAGCCACGCAGGATTACTAGAAGAAGGTAGGAGTTGTTTCAAACTCATGACAGATCAT 1320
|||||||| || || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 TGTAGCCATGCGGGGTTACTAGAAGAAGGTAGGAGTTGTTTCAAACTCATGACAGATCAT 1317
Query 1321 TACAAGATCACTCCTAGGTTAGAGCATTTGGCTTGTATGGTGGATCTTCTTGGCCGAGCC 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1318 TACAAGATCACTCCTAGGTTAGAGCATTTGGCTTGTATGGTGGATCTTCTTGGCCGAGCC 1377
Query 1381 GGGAAAGTGAAAGAAGCCTACAAATTCATACAAGAAATGCCAATGGAACCAAACGAGAGA 1440
||||||||||||||||| |||| ||| |||||||| ||| ||||||||||||||||||||
Sbjct 1378 GGGAAAGTGAAAGAAGCTTACAGATTTATACAAGATATGTCAATGGAACCAAACGAGAGA 1437
Query 1441 GTTTGGGGAGCGTTATTAGGAGCTTGCAGAGTGCATTCCAATACAGATATCGGTCTACTA 1500
||||||||||| ||||||||||||||||| |||||||| ||||||| ||||||||||||
Sbjct 1438 GTTTGGGGAGCATTATTAGGAGCTTGCAGGGTGCATTCTGATACAGACATCGGTCTACTA 1497
Query 1501 GCAGCTGATAAACTTTTCCAGTTAGCACCAGAGCAATCGGGTTACTACGTATTGCTTTCT 1560
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1498 GCAGCTGATAAACTTTTCCAGTTAGCACCCGAGCAATCGGGTTACTACGTATTGCTTTCT 1557
Query 1561 AACATTTACGCAAAGGCTGGAAGATGGGAAGAAGTGACTAACATCAGAAACATAATGAAG 1620
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1558 AACATATACGCAAAGGCTGGAAGATGGGAAGAAGTGACTAACATCAGAAACATAATGAAG 1617
Query 1621 AGCAAAGGGTTAAAGAAGAATCCCGGAGCAAGCAATGTTGAGGTGAACAGAATAATTCAT 1680
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1618 AGCAAAGGGTTAAAGAAGAATCCCGGAGCAAGCAATGTTGAGGTCAACAGAATAATTCAT 1677
Query 1681 ACATTCTTAGTAGGCGACAGGTCACACCCGCAATCCGCTGAGATCTACAGAGAGCTGGAT 1740
||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 1678 ACATTCTTAGTAGGCGACAGGTCACACCCGCAATCCGATGAGATATACAGAGAGCTGGAT 1737
Query 1741 GTTCTAGTAAAGAAAATGAAAGAGTTAGGTTATGTTCCTGATTCAGAATCAGCACTTCAC 1800
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1738 GTTCTAGTAAAGAAAATGAAAGAGTTAGGTTATGTTCCTGATTCAGAGTCAGCGCTTCAC 1797
Query 1801 GATGTAGAAGAAGAAGATAAAGAGACGCATTTAGCTGTTCACAGTGAGAAATTAGCCATA 1860
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1798 GATGTGGAAGAGGAAGATAAAGAGACGCATTTAGCTGTTCACAGTGAGAAATTAGCCATT 1857
Query 1861 GTGTTTGCCCTGATGAACAC-A-G-A--A-GAAGAAGATAGTAATAATGCGATAAGAATA 1914
|||||||| ||||||||||| | | | | |||||||| ||||||||| | |||||||||
Sbjct 1858 GTGTTTGCTCTGATGAACACTAAGGAGGAAGAAGAAGACAGTAATAATACCATAAGAATA 1917
Query 1915 ACGAAGAATCTTAGGATATGTGGAGATTGTCATGTTGCAGCTAAGCTTATCTCACAGATA 1974
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1918 ACGAAGAATCTTAGGATATGTGGAGACTGTCATGTTGCAGCTAAGCTTATCTCACAGATA 1977
Query 1975 ACTTCTCGAGAGATCATTATCAGGGACACTAATAGATTTCATGTGTTTCGGTTTGGTGTT 2034
|||||||||||||| || ||||| ||||||||||||||||||||||| ||||| ||||||
Sbjct 1978 ACTTCTCGAGAGATAATCATCAGAGACACTAATAGATTTCATGTGTTCCGGTTCGGTGTT 2037
Query 2035 TGCTCTTGTG 2044
||||||||||
Sbjct 2038 TGCTCTTGTG 2047
> AT3G49140.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr3:18211863-18215619 REVERSE LENGTH=1886
Length=1886
Score = 1648 bits (892), Expect = 0.0
Identities = 1027/1090 (94%), Gaps = 18/1090 (2%)
Strand=Plus/Plus
Query 2697 GCAAGTTATAGTTGGTTTTGATACGATGGAGATGATCAAGGAAATGGAGCTGATGGGTCT 2756
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 614 GCAAGTTATAGTTGGTTTTGATACGATGGAGATGATCAAGGAAATGGAGCTGATGGGACT 673
Query 2757 TTCTGATAGTGACTTTGAAACTGAAGATGATGAAAGTGGAGAGGATGACAGTGAGGATAC 2816
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 674 TTCTGATAGTGACTTTGAAACTGAAGATGATGAAAGTGGAGATGATGACAGTGAGGATAC 733
Query 2817 AGGAGAAGACGAAGATGAGGAGGAATGGGTTGCTGTTCTAGAGgatgaagatgaagacga 2876
|||||||||||||||||||||||||||||||||| || ||||||||||||||| | | ||
Sbjct 734 AGGAGAAGACGAAGATGAGGAGGAATGGGTTGCTATTTTAGAGGATGAAGATG-A-A-GA 790
Query 2877 cgatgatgatgaggatgatgatgatgatgatgatgatgatgatTCTGATTCCGATGAATC 2936
|||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 791 CGATGATGAT---GATGATGATGATGATGAGGATGATGATGATTCTGATTCTGATGAATC 847
Query 2937 GCTGGGAGACTGGGCAAATTTGGAAACAATGAGGAGTTGCCATCCCATGTTTTTTGCAAA 2996
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 848 GCTGGGAGACTGGGCAAATTTGGAAACAATGAGGAGTTGTCATCCCATGTTTTTTGCAAA 907
Query 2997 GAGAATGACTGAGGTTGCTTCAAATGATCCTGTTGATTGGATGGATCAGCCGTCTGCTGG 3056
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 908 GAGAATGACTGAGGTTGCTTCAAATGATCCTGTTGATTGGATGGATCAGCCGTCTGCTGG 967
Query 3057 CCTTGCTATCCAGGGACTTCTGAGTCATATCTTAGTGGAAGATTATTCAGATATCCAAAA 3116
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 968 CCTTGCTATCCAGGGACTTTTGAGTCATATCTTAGTGGAAGATTATTCAGATATCCAAAA 1027
Query 3117 GAAACTTGCTGATAGTAATTCTACAACCACGAACAGAAACAAGGATGCAGAAAACTTAGA 3176
||||||||||||||| ||||||||||| | | | ||||||||||||||||||||||||
Sbjct 1028 GAAACTTGCTGATAGCAATTCTACAACTA--A-CGGAAACAAGGATGCAGAAAACTTAGT 1084
Query 3177 AGAAAAGCTTGCAGACATTAGTAAGGCTGGTGCTGAAGAATCTGACATAGATTCGTCGCA 3236
|| ||||||| ||||| ||||||||| |||| ||| |||||||| |||||||| || ||
Sbjct 1085 GGACAAGCTTGAAGACAATAGTAAGGCAGGTGGTGACGAATCTGAGATAGATTCATCACA 1144
Query 3237 GGGTGAAAAAGAAAGAACTGTGGTGGCATTTTACAAGCTGGAGATGATAAGAATTCAGCT 3296
|| |||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1145 GGATGAAAAAGCAAGAAATGTGGTGGCGTTTTACAAGCTGGAGATGATAAGAATTCAGCT 1204
Query 3297 TATTACAGCACAAGGGGATCAGACTGAAGTTGAGGTGGAAGATGTCAGAAAAGCACAACC 3356
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1205 TATCACAGCACAAGGGGATCAGACTGAAGTTGAGGTGGAAGATGTCAGAAAAGCACAACC 1264
Query 3357 TGATGCTATTGCTCATGCATCAGCTCAAATCATAAGCCGTTTAGAAGAATCTGGTGATAA 3416
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1265 TGATGCTATTGCTCATGCATCAGCTGAAATCATAAGCCGTTTAGAAGAATCTGGTGATAA 1324
Query 3417 ACTAACTGAAGCCCTCAAATCTCTGTGTTGGAGACATAACGGTATTCTAGCAGAGGAAGT 3476
| |||||||||| ||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 1325 AATAACTGAAGCACTCAAATCTCTGTGTTGGAGACATAACAGTATTCAAGCAGAGGAAGT 1384
Query 3477 GAAGCTGATTGGGATAGATTCCCTAGGTTTTGACCTCAGGCTTTGCGCAGGAGCAAAGAT 3536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1385 GAAGCTGATTGGGATAGATTCCCTAGGTTTTGACCTCAGGCTTTGCGCAGGAGCAAAGAT 1444
Query 3537 TGAGTCATTGCGGTTTGCATTCTCGACAAGGGCAACATCAGAAGAAAATGCAGAGGGACA 3596
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1445 TGAGTCATTGCGATTTGCATTCTCGACAAGGGCAACATCAGAAGAAAACGCAGAGGGACA 1504
Query 3597 AATTAGAGAACTATTATTCCCGACAACGAACCAGGCGACGCAACCGAAACCGAAATGAGC 3656
||| ||| ||||||||||||||| |||||||||| |||| ||||| ||||| |||||| |
Sbjct 1505 AATAAGAAAACTATTATTCCCGAAAACGAACCAGTCGACACAACCAAAACCAAAATGAAC 1564
Query 3657 AAGTCAGAAGGAATGTTGATGCTGTAGTAATCTTCTGTGACGCTGCACAGAGAAAACAGT 3716
|||||||| |||||||||| |||||||||||||||||||| |||||| ||||| ||||
Sbjct 1565 AAGTCAGAGGGAATGTTGACGCTGTAGTAATCTTCTGTGAAGCTGCA--GAGAA--CAGT 1620
Query 3717 TCCATGAACCAAAATCCAAACAAGCAAAT-CAGTATGTTT-TCGGAACAAATATGAACAA 3774
||||||||||||||||||||||||||| | || ||||||| | |||||||||||||||||
Sbjct 1621 TCCATGAACCAAAATCCAAACAAGCAA-TGCA-TATGTTTCT-GGAACAAATATGAACAA 1677
Query 3775 GTTCTTGGAG 3784
||||||||||
Sbjct 1678 GTTCTTGGAG 1687
Score = 987 bits (534), Expect = 0.0
Identities = 585/610 (96%), Gaps = 2/610 (0%)
Strand=Plus/Plus
Query 2044 GCTTCTGAGCTCAGAGATAGAGAGAGCGAGAGGTTAGAGATAGTAGTAGTTTTACCGATG 2103
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 6 GCTTCTGAGCTCAGAGATAGAGAGAGCGAGAGGTTAGAGATAACAGTAGTTTTACCGATG 65
Query 2104 ATTGAGTCGGTTATGGCCGTCCGTCTCTCCACCGGATTTTGCTCGTCGACGGCGTTACTC 2163
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 66 ATTGAGTCGGTTATGGCCGTTCGTCTCTCCACCGGATTTTGCTCGTCGACGGCGTTACTC 125
Query 2164 CAGTATCGTAGTGCACCGAGCTCGGAGGAGGGAGGAAACTGCTTCCATTATGCGTCCCGC 2223
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 126 CAGTATCGTACAGCACCGAGCTCGGAGGAGGGAGGAAACTGCTTCCATTATGCGTCCCGC 185
Query 2224 CGCGTTTTTCAGCCTCAACGTCTCAACCATATTGATGGGAGTGGATTTCTGAAGTACAAC 2283
||||||||||||||||||||| || ||||||||||||||||||| |||||||||||||||
Sbjct 186 CGCGTTTTTCAGCCTCAACGTATCCACCATATTGATGGGAGTGGGTTTCTGAAGTACAAC 245
Query 2284 AGTGACTATTTAACTAGAAAACACCTGA-GGAAGAATCGAACGCAAGCCACAGCCGAGTA 2342
||||||||| |||| ||||||||||| | ||||||||||||| ||||||||||| |||||
Sbjct 246 AGTGACTATATAACAAGAAAACACCT-ACGGAAGAATCGAACTCAAGCCACAGCTGAGTA 304
Query 2343 CGTAGATTCAGCTTCAGATCCAGGAAAGCAAACTGGGAAGTCAAGGTATCATCCTTCAGA 2402
|||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 305 TGTAGATTCAGCTTCAGATCCAGAAAAGCAAACTGGCAAGTCAAGGTATCATCCTTCAGA 364
Query 2403 AGAAATAAGAGCCTCTTTGCCACAGAATGCCGGAGATTCCAGGCTTTCACCTGCAGAAAC 2462
|||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 365 AGAAATCAGAGCCTCTTTGCCACAGAATGATGGAGATTCCAGGCTTTCACCTGCAGAAAC 424
Query 2463 TACTAGAACCATCATTGAGGTGAACAATAAAGGAACCCTGATGCTTACAGGTTCAATTGG 2522
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 425 TACTAGAACCATCATTGAGGTGAACAATAAAGGAACCCTGATGCTTACAGGTTCTATTGG 484
Query 2523 TGATGGAGTTCATGAGAATATTCTCTGGCCAGATATACCTTACATAACAGATCAGAATGG 2582
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 485 TGATGGAGTTCATGAGAATATTCTCTGGCCAGATATACCTTATATAACAGATCAAAATGG 544
Query 2583 AAATTTGTACTTTCAAGTAAAGGAGGATGAGGATGTCATGCAGTCCGTTACTTCTGAAAA 2642
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 545 AAATTTATACTTTCAAGTAAAGGAGGATGAGGACGTCATGCAGTCCGTTACTTCTGAAAA 604
Query 2643 TAATTATGTG 2652
||||||||||
Sbjct 605 TAATTATGTG 614
> AT5G24060.2 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr5:8129979-8133301 REVERSE LENGTH=1811
Length=1811
Score = 475 bits (257), Expect = 1e-132
Identities = 733/949 (77%), Gaps = 87/949 (9%)
Strand=Plus/Plus
Query 2697 GCAAGTTATAGTTGGTTTTGATACGATGGAGATGATCAAGGAAATGGAGCTGATGG-GTC 2755
|||||| ||||| ||||||||||||||||||||||||||||| |||||||||| | |||
Sbjct 569 GCAAGTAATAGTAGGTTTTGATACGATGGAGATGATCAAGGACATGGAGCTGA-GCAGTC 627
Query 2756 TTTCTGATAGTGACTTTGAAACTGAAGATGAT-GAA-AGTGGAGAG-GATGACAGT-GAG 2811
|||| || || |||| | |||||| || ||| | ||| || | ||| ||| |||
Sbjct 628 CATCTGGTATTGGTTTTGGGATTGAAGAA-ATCGAAGA-TGGTGAAAG-TGA-AGTTGAG 683
Query 2812 GAT-ACAGGAGAAGACGAAGATGAGGAGGAATGGGTTGCTGTTCTAGAGgatgaagatga 2870
||| | | | ||| | |||||||| ||| || | | | | || |||| || ||
Sbjct 684 GATGAAA--ACAAGG-GC-GATGAGGATGAA-GGA--GAAGA-CAA-AG-ATGACGAGGA 733
Query 2871 a-gacgacgatgatgatgaggatgatg-atgatgatgatgatga-tgatgat-TCTGATT 2926
| | | | || | | || | |||| | ||||| || ||| | | ||| | || || |
Sbjct 734 ATGG-GTTGCTGTTC-T-AGAA-GATGGA-GATGACGAGGATAACT-ATG-TCTCAGACT 786
Query 2927 CCGATGAATCGCTGGGAGACTGGGCAAATTTGGAAACAATGAGG-AGTTGCCATCCCATG 2985
| |||||||| || |||||||||||||| |||||||| ||| | | ||||||||| |||
Sbjct 787 CTGATGAATCACTTGGAGACTGGGCAAACTTGGAAACGATGCGATA-TTGCCATCCTATG 845
Query 2986 TTTTTTGCAAAGAGAATGACTGAGGTTGCTTCAAATGATCCTGTTGATTGGATGGATCAG 3045
| |||||| | ||| ||| | ||||||||||||| ||||||||| ||||||||||||||
Sbjct 846 TATTTTGCCAGGAGGATGGCCGAGGTTGCTTCAACTGATCCTGTAAATTGGATGGATCAG 905
Query 3046 CCGTCTGCTGGCCTTGCTATCCA-GGGACTTCT-GAGTCATATC-TTAGTGGAAGATTAT 3102
||||| ||||||||||||||||| ||| || || ||||| | || || ||||||||| |
Sbjct 906 CCGTCCGCTGGCCTTGCTATCCAAGGG-CT-CTTGAGTCCTGTCATT-GTGGAAGATCAC 962
Query 3103 TCAGATATCCAAAAGA-A-A-CTTGCTGATAGTA-ATTCTACAACCAC-GAACAGAAACA 3157
|||||||||||||| | | | || ||| | ||| || ||||| ||| || || |||||
Sbjct 963 TCAGATATCCAAAA-ACATATCT--CTGGTTGTATAT-CTACAGGCACTGA-CAAAAACA 1017
Query 3158 AGGAT-GCAGAAAACTTAGAAGAAA-AGCTTGCAGACATTAGTAAGGCTGGTGCTGAA-G 3214
|||| | |||||||| |||||| | | ||| || |||| | | || | || |
Sbjct 1018 AGGAGAG-AGAAAACTCAGAAGAGATAT-TTGAAGGCATT-G---G--TGA-G---AATG 1065
Query 3215 AATCTGACATAGATTCGTCGCAGGGTGAAAAAGAAAGAACTG-TGGTGGCATTT-TACAA 3272
||||||| ||| || | | | | |||||| |||| || | | || | |||||
Sbjct 1066 AATCTGAGATA--TT-G-C--ATGTTGAAAATTCGAGAAATGCTA-TA-CAGTACTACAA 1117
Query 3273 GCTGGAGATGATAAGAATTCAGCTTATTACAGCACAAGGGG-ATCAGACTGAAGTTGAGG 3331
||||||||| |||||||| ||||| || || ||||| |||| ||||||||||||| || |
Sbjct 1118 GCTGGAGATAATAAGAATCCAGCTCATCACGGCACA-GGGGCATCAGACTGAAGTGGAAG 1176
Query 3332 TGGAAGATGTCAGAAAAGCACAACCTGATGCTATTGCTCATGCATCAGCTCAAAT-CATA 3390
||||||| ||||| |||||||||||||||| ||||||| |||||||| | || | |
Sbjct 1177 TGGAAGACGTCAGGAAAGCACAACCTGATGTTATTGCTTGTGCATCAGATGGTATAC-TG 1235
Query 3391 AGC-CGTTTAGAAGAATCTGGTGATAAACTAACTGAAGCCCTCAAATCTCTGTGTTGGAG 3449
| | ||| |||||||| ||| ||||||||||||||||| |||| |||||||||||||||
Sbjct 1236 A-CTCGTCTAGAAGAAGATGGCGATAAACTAACTGAAGCTCTCAGATCTCTGTGTTGGAG 1294
Query 3450 ACATAACGGTATTCTAGCAGAGGAAGTGAAGCTGATTGGGATAGATTCCCTAGGTTTTGA 3509
| |||| || |||| |||||||||||||||||| |||||||||||||| || ||||| ||
Sbjct 1295 AAATAATGGGATTCAAGCAGAGGAAGTGAAGCTCATTGGGATAGATTCACTTGGTTTCGA 1354
Query 3510 CCTCAGGCTTTGCGCAGGA--GCAAAGATTGAGTCATTGCGGTTTGCATTCTCGACAAGG 3567
||| ||| ||||| ||||| ||||| ||||| |||| |||||||||||||||| ||||
Sbjct 1355 CCTTAGGATTTGCTCAGGAATGCAAA--TTGAGACATTACGGTTTGCATTCTCGATAAGG 1412
Query 3568 GCAACATCAGAAGAAAATGCAGAGGGACAAATT-AGAGAACTATTATTC 3615
|||||||||||| | || || |||||||| || |||||| ||||||||
Sbjct 1413 GCAACATCAGAACACAACGCTGAGGGACAG-TTGAGAGAATTATTATTC 1460
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 188477204851
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5