BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485273
Length=2341
Score E
Sequences producing significant alignments: (Bits) Value
AT3G49160.1 | Symbols: | pyruvate kinase family protein | chr3... 3306 0.0
> AT3G49160.1 | Symbols: | pyruvate kinase family protein | chr3:18221994-18224885
REVERSE LENGTH=2445
Length=2445
Score = 3306 bits (1790), Expect = 0.0
Identities = 2083/2226 (94%), Gaps = 14/2226 (1%)
Strand=Plus/Plus
Query 31 tcttcttcttctCCTCAGGACGAGAACGAAGAGATAATTTGAACGAAGCACTTCTCCATA 90
||||||||||||||||| ||||||| |||||| || || ||||| |||| ||||||| |
Sbjct 91 TCTTCTTCTTCTCCTCAAGACGAGAGCGAAGACATTATCTGAACAAAGCGCTTCTCC--A 148
Query 91 TAACAAAGGTGATCCAATTAGTCGATATGGTAGGAATTGATTCAAGTCACTTGCTGAGAG 150
||||||||||||| ||||||||||||||||||||| |||||||||| |||||| ||||||
Sbjct 149 TAACAAAGGTGATTCAATTAGTCGATATGGTAGGACTTGATTCAAGCCACTTGTTGAGAG 208
Query 151 ACAAGATCCTTTGCTTCACCAGCAGGTCTCACATGAACAACCAACATAGGAAGACTAGTT 210
||||||||||||||||| |||||||||||||||| ||||||||||||| |||||| ||||
Sbjct 209 ACAAGATCCTTTGCTTCTCCAGCAGGTCTCACATAAACAACCAACATAAGAAGACAAGTT 268
Query 211 CTTCATTATCACTTAATCAGATGAAACTTCCTATTCCGAGAATCGTAGCTTTTGCCTCAG 270
| |||||||||||||||| |||||||||||||||| ||||| | |||||||||||| ||
Sbjct 269 ATGCATTATCACTTAATCACATGAAACTTCCTATTCAGAGAACCTTAGCTTTTGCCTTAG 328
Query 271 CCCGCGGTG-AAGGAGAAGCTGAAAGTTTCAGCAGATTGGAAGCTACCTTTGGTGATAAT 329
| ||||| | |||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 329 CTCGCGG-GAAAGGCGAAGCTGAAAGTTTCAGCAGATTGGAAGCCACCTTTGGTGATAAT 387
Query 330 ACCTCCACAGAATGTACCTGGAGTTTTGATTTTCCACAGTCTAAAGTTGAGGTTTCTCAT 389
||||||||||||||||||||||||||||| |||||| | ||||||| || | ||||||
Sbjct 388 ACCTCCACAGAATGTACCTGGAGTTTTGACTTTCCAGATTCTAAAGATGCTATGTCTCAT 447
Query 390 CTCCAGTCAGAAGCACACCTCTCTGGAAGCAATGGGGATAGTAATGTGGCTAGTGTTATC 449
||| ||||||||||| ||||||||||||||||||||| | |||||||||||||||||||
Sbjct 448 CTCAAGTCAGAAGCAGACCTCTCTGGAAGCAATGGGGCCAATAATGTGGCTAGTGTTATC 507
Query 450 GAAAAACTGAATGCTCTTCGGTCACATCTATTAGCAGCAGAGAAGTGGAACT-CTTCTCA 508
||||||||||||||||||||||||||||| |||||||||||||| ||||| | |||||||
Sbjct 508 GAAAAACTGAATGCTCTTCGGTCACATCTCTTAGCAGCAGAGAAATGGAA-TGCTTCTCA 566
Query 509 GCTACACTTATGTGACAGTAAATATCTGGAATGTGCAACAAACTTAGTTCATTATATGGC 568
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 567 ACTACACTTATGTGACAGTAAGTATCTGGAATGTGCAACAAACTTAGTTCATTATATGGC 626
Query 569 TTTGAGGTCCCTGGACATTGAGCAGCTGAACAACCATCTTGCTTCTCTTGGTCTGTCAAG 628
|||||| || ||||||||||||||||| |||| ||||| ||||||||||||||||||||
Sbjct 627 TTTGAGATCTCTGGACATTGAGCAGCTCAACAGTCATCTAGCTTCTCTTGGTCTGTCAAG 686
Query 629 TTTAGACAACAACAATCTCGATGTTCTAGCCCGCCTTAACGCATCTATTAATCTGTTGAT 688
|||||||||||||||||| |||||||| |||| ||||||||| ||||||||||| |||||
Sbjct 687 TTTAGACAACAACAATCTGGATGTTCTCGCCCACCTTAACGCCTCTATTAATCTTTTGAT 746
Query 689 GAACGATCAAAATGCTGTGACGGAGTCTTGGACTAATGCATATCCCAAGGGAAAAAGTAC 748
|||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 747 GAACGATCAAAACGCTGTGACGGAGTCTTGGACTAATGTATATCCCAAGGGAAAAAGTAC 806
Query 749 TAAGAAGAAAGATAAAGGGAGGGTATTATCATACAAAGAGTCATTACTTGGTAAACTTCG 808
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 807 TAAGAAGAATGATAAAGGGAGGGTATTATCATACAAAGAGTCATTACTTGGTAAACTTCG 866
Query 809 TGAAGGAAGAAGTACTCATATCATGGTAACTGTTGGTGAAGAAGCAACTTTGAGTGAAAC 868
||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 867 TGAGGGAAGAAGTACTCATATCATGGTAACTATTGGTGAAGAAGCAACTTTGAGTGAAAC 926
Query 869 ATTTATAACCGATATTCTTAAGGCTGGAACATCCATTATCCGCATAAACTGTGCACATGG 928
||||||||| ||||||||||| ||||||||||| ||||||| |||||||||||||||||
Sbjct 927 ATTTATAACTGATATTCTTAAAGCTGGAACATCTGTTATCCGTATAAACTGTGCACATGG 986
Query 929 AGATCCAAGCATTTGGGGTGAGATCATCAAAAGAGTAAGAAGAACTTCTCAGATGCTAGA 988
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 987 AGATCCAAGTATTTGGGGTGAGATCATCAAAAGAGTAAGAAGAACTTCTCAGATGTTAGA 1046
Query 989 GATGCCATGCCGTGTTCATATGGATTTAGCGGGACCAAAACTCAGAACTGGTACCTTAAA 1048
||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1047 GATGCCATGTCGCGTTCATATGGATTTAGCAGGACCAAAACTCAGAACTGGTACCTTAAA 1106
Query 1049 ACCTGGTCCCTGTGTGATGAAAGTTTCACCAAAGAAAGATGCTTATGGAAATGTTGTTTC 1108
||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1107 ACCTGGTCCGTGTGTGATGAAAATTTCACCAAAGAAAGATGCTTATGGAAATGTTGTTTC 1166
Query 1109 TCCTGCTTTGGTATGGCTTTGCCTCACAGGAACAGAACCTCCTACTCACAT-TTTTCCC- 1166
|||||||||||||||||| |||||||||||||||||||||||| || ||| ||| |||
Sbjct 1167 TCCTGCTTTGGTATGGCTCTGCCTCACAGGAACAGAACCTCCTGCT--CATGTTTCCCCT 1224
Query 1167 GATGCTACTATATCGGTCCAAGACCAAGATTTTCTTGCTGGTCTCCAAATTGGTGATTCT 1226
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1225 GATGCTACTATATCGGTCCAAGGCCAAGATTTTCTTGCTGGTCTCCAAATTGGTGATTCT 1284
Query 1227 ATAAAACTATTTGACGCTAGAGGAAGAAAGAGGAGACTTAAAATCTCAAAAGAGTTTCCT 1286
|||| ||||| |||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 1285 ATAAGACTATGTGACGCTAGAGGGAGAAAGAGGAGACTTAAAATCTCAAAAGAGTTTCAT 1344
Query 1287 GTTTTCTCCAGTACCGGGTTTGTGGCTGAATGTTTCGACACTTCTT--ATATAAAGTCTG 1344
|||||| |||||||||||||||||||||||||||||||||| ||| ||| |||| ||
Sbjct 1345 GTTTTCAACAGTACCGGGTTTGTGGCTGAATGTTTCGACACTGCTTACATAGAAAG--TG 1402
Query 1345 GAACTGAGTTAAGCGCTAAGGGAAAGAAAGGGAGACGTTTGGTTGGACGAGTAGTAGATG 1404
||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1403 GAACTGAGTTAAGTGTTAAGGGAAAGAAAGGGAGACGTTTAGTTGGACGAGTAGTAGATG 1462
Query 1405 TTCCTCCCAAGGAATCTTTTGTAAGGCTTAAAGTTGGAGATTTACTTGTCATAACCCGAG 1464
|||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 1463 TTCCTCCCAAAGAATCTTTTGTAAGGCTAAAAGTTGGAGATTTACTAGTCATAACCCGAG 1522
Query 1465 AAGGATCGCTCGATGAACCATCTGTAACTGTTCCAGGAGCTCATAGGTTAACTTGTCCTT 1524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1523 AAGGATCGCTCGATGAACCATCTGTAACTGTTCCAGGAGCTCATAGGTTAACTTGTCCTT 1582
Query 1525 CCGGTTATTTGTTTGATTCAGTCAAGCCTGGTGAAACCATTGGTTTTGATGATGGAAAAG 1584
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1583 CCGGTTATTTGTTTGATTCAGTCAAGCCTGGTGAAACCATTGGTTTTGATGATGGAAAAA 1642
Query 1585 TATGGGGAGTAATAAAAGGAACAAGCCCTTCAGAGGTAATTGTCTCCATCACTCATGCTG 1644
|||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 1643 TATGGGGAGTCATAAAAGGAACAAGTCCTTCAGAGGTAATTGTCTCCATAACTCATGCAC 1702
Query 1645 GTCCAAAAGGTACAAACCTAGGATCAGAGAAGTCCATTAACATACCGCAGAGCGATATCC 1704
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703 GTCCAAAAGGTACAAAACTAGGATCAGAGAAGTCCATTAACATACCGCAGAGCGATATCC 1762
Query 1705 GTTTCAAAGGCCTGACATCAAAAGACATCAAAGATCTTGAATATGTAGCTTCACATGCGG 1764
|||||||||| | ||||||||||| || ||||||||||| ||||||||||||||||| |
Sbjct 1763 ATTTCAAAGGCTTAACATCAAAAGATATTAAAGATCTTGATTATGTAGCTTCACATGCTG 1822
Query 1765 ACATGGTTGGCATTTCTTTCATACGCGATGTCCATGATATTACCGTTCTTCGACAAGAGT 1824
| |||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 1823 ATATGGTTGGTATTTCTTTCATACGTGATGTCCATGATATAACCGTTCTTCGACAAGAGT 1882
Query 1825 TGAAGAAAAGGAAACTAGAGGATCTTGGTATTGTTTTAAAGATTGAAACGGAAAGTGGAT 1884
|||||||||| |||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 1883 TGAAGAAAAGAAAACTAGATGATCTTGGTATTGTTTTAAAGATTGAAACGAAAAGTGGAT 1942
Query 1885 TCAAGAATATGTCCTTGATTCTATTAGAAGCAATGAAGTGTTCGAATCCTTTAGGAGTTA 1944
|||||||| |||| |||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 1943 TCAAGAATTTGTCTTTGATTCTTTTAGAAGCAATGAAGTGTTCGAATCCTTTAGGAATTA 2002
Query 1945 TGATAGCTCGAGGCGATCTTGCGGTGGAATGTGGATGGGAGAGATTGGCTAATATACAGG 2004
|||||||| |||| |||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 2003 TGATAGCTAGAGGTGATCTTGCAGTGGAATGTGGATGGGAGAGATTGGCTAATATGCAGG 2062
Query 2005 AAGAGATTATAGCTATTTGTAAAGCTGCTCGTGTACCGGTGATTATGGCAACTCAGGTTC 2064
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2063 AGGAGATTATAGCTATTTGTAAAGCTGCTCGTGTACCGGTGATTATGGCAACTCAGGTTC 2122
Query 2065 TTGAATCACTCGTGAAATCCGGTGTTCCAACTCGAGCTGAGATCACAGATGCTTCAAATG 2124
|||||||||| ||||||||||| ||||||||| |||||||||| || |||||| ||||||
Sbjct 2123 TTGAATCACTTGTGAAATCCGGAGTTCCAACTAGAGCTGAGATTACTGATGCTGCAAATG 2182
Query 2125 CCAAAAGGGCGAGCTGTGTGATGTTGAACAAAGGCAAGAATATCGTTGAAGCTGTTTCGA 2184
| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 2183 CAAAAAGGGCGAGCTGTGTGATGTTAAACAAAGGCAAGAATATCGTTGAAGCTGTTTCAA 2242
Query 2185 TGTTGGATACTATTCTTCATACCAAGCTTATCTACAAGAAACCAGACTCTGAAAATCTCC 2244
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 2243 TGTTGGATACTATTCTTCATACCAAGCTTATCTACAAGAAATCGGACTCTGAAAATCTCC 2302
Query 2245 ATTGAT 2250
||||||
Sbjct 2303 ATTGAT 2308
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 116214261675
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5