BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485276
Length=1429
Score E
Sequences producing significant alignments: (Bits) Value
AT3G49180.1 | Symbols: RID3 | Transducin/WD40 repeat-like super... 2047 0.0
AT3G49190.1 | Symbols: | O-acyltransferase (WSD1-like) family ... 126 5e-28
> AT3G49180.1 | Symbols: RID3 | Transducin/WD40 repeat-like superfamily
protein | chr3:18229749-18232004 FORWARD LENGTH=1508
Length=1508
Score = 2047 bits (1108), Expect = 0.0
Identities = 1335/1442 (93%), Gaps = 26/1442 (2%)
Strand=Plus/Plus
Query 1 TAGATATCACAAAACCCAGACTTTGGAATCAGTTTCTCtttttttCCCTCTTTCTCTTAG 60
||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| ||
Sbjct 1 TAGATATCACAAAACCCAGAC-TTGGAATCAGTTTCTCTTTACTTCCCTCTTTCTCTGAG 59
Query 61 CGATGGAGATTTCTGTTATCGCTTCATCGTCAATCGATGAAGGAATTGGAAGCTGGGATC 120
| ||||||||| |||| |||||||| || ||||||||||||||||||||||| |||||||
Sbjct 60 CTATGGAGATTACTGTAATCGCTTCTTCCTCAATCGATGAAGGAATTGGAAGTTGGGATC 119
Query 121 TCAAAACCGGGA-ATGAGCAGCTTCGTTTCAAGCAGTGTGCTTCTCCGGCGCATGGTCTC 179
|||||||||||| | |||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 120 TCAAAACCGGGACA-GAGCAGCTTCAATTCAAGCCGTGTGCTTCTCCGGCGCATGGTCTC 178
Query 180 ACCGCCGTCGGCGAGAAATTCCTCGCCTCCTCTCAGCTC-CGTAAAGAATCTACTTCTTC 238
|||||||||||||| ||||| |||||||||||||||||| || |||| | | ||||
Sbjct 179 ACCGCCGTCGGCGAAAAATTTCTCGCCTCCTCTCAGCTCTCGGCGAGAA---A-TACTTC 234
Query 239 TGGCTCGATTTTTTACTGGTCTTGGACTAAGCCTCAAGTTGAAGTGAGGAGCTTTCCAGT 298
|||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||
Sbjct 235 TGGCTCGATTTTTTACTGGTCTTGGACTAAGCCTCAAGCTGAAGTGAAGAGCTACCCAGT 294
Query 299 GGAACCAATAAAGGCTCTTGCAGCAAACAATGAAGGAACTTACTTAGTTGGTGGTGG-AT 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 295 GGAACCAATAAAGGCTCTTGCAGCAAACAATGAAGGAACTTACTTAGTTGGTGGTGGAAT 354
Query 358 CCTCCGGAGATATTTACCTTTGGGAGGTTGCGACTGGGAAGTTGCTTAAGAAGTGGCATG 417
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 -CTCTGGAGATATTTACCTTTGGGAGGTTGCGACTGGGAAGTTGCTTAAGAAGTGGCATG 413
Query 418 GTCATTATCGTTCAGTGACATGTTTGGTGTTCTCTGGAGATGATTCTTTGTTGGTTTCAG 477
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 414 GTCATTATCGTTCAGTAACATGTTTGGTGTTCTCTGGAGATGATTCTTTGTTGGTTTCTG 473
Query 478 GATCTCAAGATGGATCTGTTAGAGTTTGGTCTCTTATAAGGCTATTTGATGATTTCCAGA 537
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 474 GATCTCAAGATGGGTCTATTAGAGTTTGGTCTCTTATAAGGCTATTTGATGATTTCCAGA 533
Query 538 GGCAGCAAGGGAAAACTCTTTATGAACATAATTTTAATGAGCATACAATGTCTGTGACAG 597
||||||||||||| |||||||||||||| |||||||||||||||||||||||||| || |
Sbjct 534 GGCAGCAAGGGAACACTCTTTATGAACACAATTTTAATGAGCATACAATGTCTGTAACTG 593
Query 598 ACATTGTTATTGATTATGGAGGCTGCAATGCTATGATAATTTC-TGCTTCGGAAGATCGG 656
| |||||||| || |||||||||||||||||| |||||||||| | |||| |||||||||
Sbjct 594 ATATTGTTATAGACTATGGAGGCTGCAATGCTGTGATAATTTCCT-CTTCAGAAGATCGG 652
Query 657 ACTTGCAAGGTTTGGAGCTTGTCAAGAGGGAAATTGTTGAAAAATATCATTTTTCCTTCA 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 653 ACTTGCAAGGTTTGGAGCTTGTCAAGAGGGAAATTGTTGAAAAATATCATTTTTCCTTCA 712
Query 717 GCCATCAATGCACTCGCGTTGGACCCTGGCGGGTATGTGTTCTATGCTGGTGGTAGAGAT 776
| ||||||||||||||| ||||||||||| |||| ||||||||||||||||| |||||
Sbjct 713 GTCATCAATGCACTCGCATTGGACCCTGGAGGGTGTGTGTTCTATGCTGGTGCCAGAGAC 772
Query 777 GGCAAAATTTATATCGGTGCCATTAATGCCACGAGTGAATATGGGACACAAGTTCTAGGT 836
||||||| ||||||||||||||||||||||| |||||||| |||||||||||||| |||
Sbjct 773 AGCAAAATCTATATCGGTGCCATTAATGCCACAAGTGAATACGGGACACAAGTTCTTGGT 832
Query 837 TCAGTATCCGAACAAAG-CAAAGCTGTTACTTGCTTAGCATATTGCACAGAGGGAAACCT 895
|||||||| ||| |||| ||||||| ||||||||||||||||||| |||| ||||||||
Sbjct 833 TCAGTATCTGAA-AAAGGCAAAGCTATTACTTGCTTAGCATATTGTGCAGACGGAAACCT 891
Query 896 TTTAATTTCTGGATCAGAAGAAGGTGTGGTTTGTGTTTGGGATCCCAAATCACGTCGCCC 955
||| || |||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 892 TTTGATATCTGGATCAGAAGATGGTGTGGTTTGTGTTTGGGATCCCAAATCACTTCGCCA 951
Query 956 TGTTCGTACTCTCGGCCGTGGAAAAGG----A-AAA-GGTCCTCCTGTGAACAATATTCA 1009
||||||||||||| || || |||||| | ||| |||||| ||||||||||||||
Sbjct 952 TGTTCGTACTCTCATCCATGCAAAAGGTTCTAGAAAAGGTCCT---GTGAACAATATTCA 1008
Query 1010 AATTGTTAGAAAAACGATTGTTGATAATTCCAACAAAACACAA-TCTTCCTGGAAAAGAC 1068
||||||||||||||||||||||| ||||||||||||||| ||| | |||||||||||| |
Sbjct 1009 AATTGTTAGAAAAACGATTGTTGCTAATTCCAACAAAACCCAAGT-TTCCTGGAAAAGTC 1067
Query 1069 GTGGGTCTTTGATGCCACCGCCTTTGGAAAAATATGAAAGATCAGGAGAAGATACTATGG 1128
||||| |||| || ||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 1068 GTGGGGCTTTAATCCCACCGCCTTTGGAAAAATATGAAAGACCAGTAGAAGATACTATGG 1127
Query 1129 ATGGTATCGTTACCGTTGATCCACCCCCATTTTCTGATGTTCCTGTTTACTCTTCTTTCC 1188
||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1128 ATGGTATCGTTACGGTTGATCCGCCGCCATTTTCTGATGTTCCTGTTTACTCTTCTTTCC 1187
Query 1189 TCAGCGCTGACCTTATTGACGAGCAAGTTAGAGAACTTCAGCAACAAGGCTCTGCAGCAA 1248
|||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1188 TCAGTGCTGACCTTATTGACGAGCAAGTTAAAGAACTTCAGCAACAAGGCTCTGCAGCAA 1247
Query 1249 CAGAGATCGAAATGGAAAGACTGAAACTTGAATACAAAAGATCTTTACAGATGAATGATC 1308
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1248 CAGAGATGGAAATGGAAAGACTGAAACTTGAATACAAAAGATCTTTACAGATGAATGAAC 1307
Query 1309 AATGGCAGAAGAACTATGAGAATTTGCTTCAGGTGGTTATGGAAGAAGAACAAATCGGTG 1368
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1308 AATGGCAGAAGAACTATGAGAATTTGCTTCAAGTGGTTATGGAAGAAGAACAAATCGGTG 1367
Query 1369 GTTCCAATTGAAAGCTTTT-ATTGTTGTTTCTACACATTTTTGGAATTATATTGAGAGAT 1427
|| |||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||
Sbjct 1368 GTACCAATTGAAAGCTTTTTATTGTTGTTTCTACACATTTTTGGAATTACATTAAGAGAT 1427
Query 1428 AT 1429
||
Sbjct 1428 AT 1429
> AT3G49190.1 | Symbols: | O-acyltransferase (WSD1-like) family
protein | chr3:18231845-18234391 REVERSE LENGTH=1727
Length=1727
Score = 126 bits (68), Expect = 5e-28
Identities = 77/81 (95%), Gaps = 1/81 (1%)
Strand=Plus/Minus
Query 1350 GAAGAAGAACAAATCGGTGGTTCCAATTGAAAGC-TTTTATTGTTGTTTCTACACATTTT 1408
||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 1727 GAAGAAGAACAAATCGGTGGTACCAATTGAAAGCTTTTTATTGTTGTTTCTACACATTTT 1668
Query 1409 TGGAATTATATTGAGAGATAT 1429
|||||||| ||| ||||||||
Sbjct 1667 TGGAATTACATTAAGAGATAT 1647
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70431364635
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5