BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg485277 Length=1675 Score E Sequences producing significant alignments: (Bits) Value AT3G49190.1 | Symbols: | O-acyltransferase (WSD1-like) family ... 2268 0.0 AT3G49180.1 | Symbols: RID3 | Transducin/WD40 repeat-like super... 126 6e-28 > AT3G49190.1 | Symbols: | O-acyltransferase (WSD1-like) family protein | chr3:18231845-18234391 REVERSE LENGTH=1727 Length=1727 Score = 2268 bits (1228), Expect = 0.0 Identities = 1483/1606 (92%), Gaps = 18/1606 (1%) Strand=Plus/Plus Query 1 TTGAACAAAAAAGCATGGAGATTAAGACGCAACGACACATATC-GGAGAACGAGAAGGAA 59 |||||||||||| ||||||||| |||| | || ||||||||| || | ||||||||||| Sbjct 2 TTGAACAAAAAATAATGGAGATTGAGACACGACCACACATATCAGG-GGACGAGAAGGAA 60 Query 60 GAGGAGCAACCACTTAGCCCAGCGGCCCGTCTTTTTCACTCGCCGGAGTTTAACTGCAAC 119 |||||||||||||||||||| ||||| ||||| |||||| |||| ||||||||||||||| Sbjct 61 GAGGAGCAACCACTTAGCCCGGCGGCGCGTCTGTTTCACGCGCCAGAGTTTAACTGCAAC 120 Query 120 ATTATATCGGTGATTGGTTTAAAGAGTAAGCTCGATCCATGTGTGATTATCAGAGGCTTT 179 || ||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||| Sbjct 121 ATCATATCAGTGATTGGTTTTAAGAGTAAGCTCGATCCATGTGTGTTTATCAGAGGCTTT 180 Query 180 AAGGAAACTTTTATCAGGCATCCTCGTTTCTCAAGTAAATTGGTGACCGATGAGAATGGA 239 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 AAGGAAAGTTTTATCAGGCATCCTCGTTTCTCAAGTAAATTGGTGACCGATGAGAATGGA 240 Query 240 CAAAACCAAAGATGGGTTCGGACAAACGTGGTCGTCGAGGATCACGTCATTGTACCGGAA 299 ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| || Sbjct 241 CAAAACCAAAGATGGGTTCGGACAAACGTGGTCGTCGAGGATCACTTCATCGTACCCAAA 300 Query 300 ATCAAACTTCAAAACATAGAGAACACAGACTCGTTTCTCGAAGATTACGTTTCTGACCTC 359 ||||||| ||||||||||||||| || || | ||||||||||||||||||||||||||| Sbjct 301 ATCAAACCCCAAAACATAGAGAACTCAAACGCATTTCTCGAAGATTACGTTTCTGACCTC 360 Query 360 ATGAAGATCCCGTTGGACATCTCGAGGCCATTATGGGAGCTTCACCTACTCGACTTGAAA 419 ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| Sbjct 361 ATGAAGATCCCGTTGGACACCTCGAGGCCGTTATGGGAGCTTCACCTACTCGACTTGAAA 420 Query 420 ACCTCAGACGCTGAAAACGTCGCAGTTTTAAAGATCCATCACTCGGTTGGCGATGGTATG 479 ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||| Sbjct 421 ACCTCAGACGCTGAAAACGTCGCCGTTTTAAAGATCCATCACTCGGTTGGTGATGGCATG 480 Query 480 TCAATCATGTCTCTTGTCCTCGCTTGTATGCGTAAAACATCAAATCCGGATGAGCTTCCT 539 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 481 TCAATCATGTCTCTTGTCCTCGCTTGTATGCGTAAAACATCAAATCCCGATGAGCTTCCT 540 Query 540 AGTCTCCCGTACCAGTACCGGTCGTCATCAGGGTCATCCCTGTTAACAACCGGCTCAAGA 599 ||||| |||||||||||||||||||||||| ||||||||||||| |||||||| |||||| Sbjct 541 AGTCTTCCGTACCAGTACCGGTCGTCATCAAGGTCATCCCTGTTGACAACCGGTTCAAGA 600 Query 600 AGTGATTCCCGGTTATTGTGGCTGGTTAAGGTTCTCTGGACGGCGGTTATATTGGGTTTA 659 |||||||||||||| |||||| ||||||||||| | |||||||||||||| ||||||||| Sbjct 601 AGTGATTCCCGGTTGTTGTGGTTGGTTAAGGTTATTTGGACGGCGGTTATCTTGGGTTTA 660 Query 660 AACACGATTTGTGATACTTTGGAGTTTATTGTTACGACATTGTTTGTTAAGGACACCGAG 719 |||||| |||||||| |||||||||||||||||||||||||||| ||||||||||||||| Sbjct 661 AACACGGTTTGTGATGCTTTGGAGTTTATTGTTACGACATTGTTCGTTAAGGACACCGAG 720 Query 720 ACGCCCATCAAAGGTGATTTCCGGTCAACGAAGAGTAAACGGTTGCGTTTGGTTCATCGT 779 || ||||||||||||||||||| ||||||||||||||||| | ||||||||||||||||| Sbjct 721 ACACCCATCAAAGGTGATTTCCTGTCAACGAAGAGTAAACAGCTGCGTTTGGTTCATCGT 780 Query 780 ACCGTAAGCCTTGACGATATTAAGCTAATCAAGAACGCCATGAACATGAC-AGTCAACGA 838 || || |||||||||||||| ||||||| ||||||||| ||||||||||| | ||||||| Sbjct 781 ACTGTGAGCCTTGACGATATCAAGCTAACCAAGAACGCAATGAACATGACTA-TCAACGA 839 Query 839 TGTTGTACTTGGAGTGACCCAAGCTAGTCTCTCGCAATACCTTgagagaagatacggaga 898 ||||||||||||||| ||||||||| ||||||||| |||||||| ||||||||||||||| Sbjct 840 TGTTGTACTTGGAGTAACCCAAGCTGGTCTCTCGCGATACCTTGCGAGAAGATACGGAGA 899 Query 899 aaga-gaaactaaga---ggaag-agaaaaaatctgcctaaaagaataagGCTAAGATCA 953 | || |||||||| | ||||| | |||||| |||||||| |||||||||||||||||| Sbjct 900 A-GAAGAAACTAAAAATAGGAAGCA-AAAAAAGCTGCCTAAGAGAATAAGGCTAAGATCA 957 Query 954 GCTCTGCTTGTAAACTTAAGACCCACAACTGGAATCCAGGATATAGCCGATATGATGGAG 1013 |||||||||||||||||| |||| |||||||||||||||||| |||| |||||||||||| Sbjct 958 GCTCTGCTTGTAAACTTACGACCAACAACTGGAATCCAGGATCTAGCAGATATGATGGAG 1017 Query 1014 AACGGGTCCAAATGTAGGTGGGGAAATTGGTTCGGGTATATAGTATTCCCGTTTTCTATC 1073 || ||||| |||||||||||||||||||||||||| ||| ||||||| |||||||||||| Sbjct 1018 AAAGGGTCTAAATGTAGGTGGGGAAATTGGTTCGGCTATGTAGTATTTCCGTTTTCTATC 1077 Query 1074 GCATTACGCGATGACCCATTGGAACATCTCAAAAGAGCCCAGAAGATCATCACTCGTAAG 1133 ||||||||||||||||||||||||||||| ||| ||| ||||||| ||||| ||| ||| Sbjct 1078 GCATTACGCGATGACCCATTGGAACATCTTGAAATAGCTCAGAAGACCATCAGTCGAAAG 1137 Query 1134 AAGAACTCATTCGGGGCAATGCTAACATACATTTTCTGTAGAATCATTGTCAAATTCCTT 1193 ||||| |||| ||| ||||||||||||||||| ||||||||||||||||||||||| ||| Sbjct 1138 AAGAATTCATACGGCGCAATGCTAACATACATATTCTGTAGAATCATTGTCAAATTGCTT 1197 Query 1194 GGAATTCA-GTTGGCGGCTACTATAATAAACAGAATGGTGTCAAACACAACGATGACGTT 1252 ||||| || | ||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1198 GGAAT-CAAGGTGGCGGCTAGTATAATAAACAGAATGGTGTCAAACACAACGATGACGTT 1256 Query 1253 TTCGAACATGGTTGGTCCCGTTGAACAAGTTAGCTTCTATGGACATCCCATCACTTACTT 1312 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1257 TTCGAACATGGTTGGTCCCGTTGAAGAAGTTAGCTTCTATGGACATCCCATCACTTACTT 1316 Query 1313 TGCCTCAAGTGGTTATGGTCATCCCCATGCATTGACGATAAATTGTCAAAGTTATATGAA 1372 ||||||||||| |||||| ||||||||||| ||||||||| ||||||||||||||||||| Sbjct 1317 TGCCTCAAGTGCTTATGGCCATCCCCATGCGTTGACGATACATTGTCAAAGTTATATGAA 1376 Query 1373 TAAGATGACAATAACACTAATCGTAGATTCAACGGTGATAAGTGATCCTCATCGGCTCTG 1432 |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| || Sbjct 1377 TAAGATGACAATTACACTAATCGTAGATCCAACGGTGATAAGTGATCCTCATCGGCTTTG 1436 Query 1433 TGACGATTGGCAGGAATCTCTCCGAAGCATTAAAGCCGCTGTC-CAGAAAAGAGGGTCTC 1491 |||||| ||| | |||||||||||||||||||||||||||||| || ||||||| ||||| Sbjct 1437 TGACGACTGGGAAGAATCTCTCCGAAGCATTAAAGCCGCTGTCACA-AAAAGAGAGTCTC 1495 Query 1492 TCGGTTTGTGGGATTATCTCAGGCTTCTC-AGCAATAGAATGGCTTGGCTACTTTACCAA 1550 || |||||||||||||||||||| ||||| | ||||||| |||||||||||||||||||| Sbjct 1496 TCCGTTTGTGGGATTATCTCAGGATTCTCCA-CAATAGAGTGGCTTGGCTACTTTACCAA 1554 Query 1551 ATGGCTGGACTACTATACAAAATGCTTTGATGC-TAAATTTGGGAT 1595 || ||||| ||||| |||| |||||| |||| | |||||||||||| Sbjct 1555 ATCGCTGGGCTACTTTACAGAATGCTATGATACCTAAATTTGGGAT 1600 Score = 126 bits (68), Expect = 6e-28 Identities = 77/81 (95%), Gaps = 1/81 (1%) Strand=Plus/Plus Query 1596 ATATCTCTCAATATAATTCCAAAAATGTGTAGAAACAACAATAAAA-GCTTTCAATTGGA 1654 |||||||| ||| ||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1647 ATATCTCTTAATGTAATTCCAAAAATGTGTAGAAACAACAATAAAAAGCTTTCAATTGGT 1706 Query 1655 ACCACCGATTTGTTCTTCTTC 1675 ||||||||||||||||||||| Sbjct 1707 ACCACCGATTTGTTCTTCTTC 1727 > AT3G49180.1 | Symbols: RID3 | Transducin/WD40 repeat-like superfamily protein | chr3:18229749-18232004 FORWARD LENGTH=1508 Length=1508 Score = 126 bits (68), Expect = 6e-28 Identities = 77/81 (95%), Gaps = 1/81 (1%) Strand=Plus/Minus Query 1596 ATATCTCTCAATATAATTCCAAAAATGTGTAGAAACAACAATAAAA-GCTTTCAATTGGA 1654 |||||||| ||| ||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1429 ATATCTCTTAATGTAATTCCAAAAATGTGTAGAAACAACAATAAAAAGCTTTCAATTGGT 1370 Query 1655 ACCACCGATTTGTTCTTCTTC 1675 ||||||||||||||||||||| Sbjct 1369 ACCACCGATTTGTTCTTCTTC 1349 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 82780698705 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5