BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485277
Length=1675
Score E
Sequences producing significant alignments: (Bits) Value
AT3G49190.1 | Symbols: | O-acyltransferase (WSD1-like) family ... 2268 0.0
AT3G49180.1 | Symbols: RID3 | Transducin/WD40 repeat-like super... 126 6e-28
> AT3G49190.1 | Symbols: | O-acyltransferase (WSD1-like) family
protein | chr3:18231845-18234391 REVERSE LENGTH=1727
Length=1727
Score = 2268 bits (1228), Expect = 0.0
Identities = 1483/1606 (92%), Gaps = 18/1606 (1%)
Strand=Plus/Plus
Query 1 TTGAACAAAAAAGCATGGAGATTAAGACGCAACGACACATATC-GGAGAACGAGAAGGAA 59
|||||||||||| ||||||||| |||| | || ||||||||| || | |||||||||||
Sbjct 2 TTGAACAAAAAATAATGGAGATTGAGACACGACCACACATATCAGG-GGACGAGAAGGAA 60
Query 60 GAGGAGCAACCACTTAGCCCAGCGGCCCGTCTTTTTCACTCGCCGGAGTTTAACTGCAAC 119
|||||||||||||||||||| ||||| ||||| |||||| |||| |||||||||||||||
Sbjct 61 GAGGAGCAACCACTTAGCCCGGCGGCGCGTCTGTTTCACGCGCCAGAGTTTAACTGCAAC 120
Query 120 ATTATATCGGTGATTGGTTTAAAGAGTAAGCTCGATCCATGTGTGATTATCAGAGGCTTT 179
|| ||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 121 ATCATATCAGTGATTGGTTTTAAGAGTAAGCTCGATCCATGTGTGTTTATCAGAGGCTTT 180
Query 180 AAGGAAACTTTTATCAGGCATCCTCGTTTCTCAAGTAAATTGGTGACCGATGAGAATGGA 239
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AAGGAAAGTTTTATCAGGCATCCTCGTTTCTCAAGTAAATTGGTGACCGATGAGAATGGA 240
Query 240 CAAAACCAAAGATGGGTTCGGACAAACGTGGTCGTCGAGGATCACGTCATTGTACCGGAA 299
||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||
Sbjct 241 CAAAACCAAAGATGGGTTCGGACAAACGTGGTCGTCGAGGATCACTTCATCGTACCCAAA 300
Query 300 ATCAAACTTCAAAACATAGAGAACACAGACTCGTTTCTCGAAGATTACGTTTCTGACCTC 359
||||||| ||||||||||||||| || || | |||||||||||||||||||||||||||
Sbjct 301 ATCAAACCCCAAAACATAGAGAACTCAAACGCATTTCTCGAAGATTACGTTTCTGACCTC 360
Query 360 ATGAAGATCCCGTTGGACATCTCGAGGCCATTATGGGAGCTTCACCTACTCGACTTGAAA 419
||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 361 ATGAAGATCCCGTTGGACACCTCGAGGCCGTTATGGGAGCTTCACCTACTCGACTTGAAA 420
Query 420 ACCTCAGACGCTGAAAACGTCGCAGTTTTAAAGATCCATCACTCGGTTGGCGATGGTATG 479
||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||
Sbjct 421 ACCTCAGACGCTGAAAACGTCGCCGTTTTAAAGATCCATCACTCGGTTGGTGATGGCATG 480
Query 480 TCAATCATGTCTCTTGTCCTCGCTTGTATGCGTAAAACATCAAATCCGGATGAGCTTCCT 539
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 481 TCAATCATGTCTCTTGTCCTCGCTTGTATGCGTAAAACATCAAATCCCGATGAGCTTCCT 540
Query 540 AGTCTCCCGTACCAGTACCGGTCGTCATCAGGGTCATCCCTGTTAACAACCGGCTCAAGA 599
||||| |||||||||||||||||||||||| ||||||||||||| |||||||| ||||||
Sbjct 541 AGTCTTCCGTACCAGTACCGGTCGTCATCAAGGTCATCCCTGTTGACAACCGGTTCAAGA 600
Query 600 AGTGATTCCCGGTTATTGTGGCTGGTTAAGGTTCTCTGGACGGCGGTTATATTGGGTTTA 659
|||||||||||||| |||||| ||||||||||| | |||||||||||||| |||||||||
Sbjct 601 AGTGATTCCCGGTTGTTGTGGTTGGTTAAGGTTATTTGGACGGCGGTTATCTTGGGTTTA 660
Query 660 AACACGATTTGTGATACTTTGGAGTTTATTGTTACGACATTGTTTGTTAAGGACACCGAG 719
|||||| |||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct 661 AACACGGTTTGTGATGCTTTGGAGTTTATTGTTACGACATTGTTCGTTAAGGACACCGAG 720
Query 720 ACGCCCATCAAAGGTGATTTCCGGTCAACGAAGAGTAAACGGTTGCGTTTGGTTCATCGT 779
|| ||||||||||||||||||| ||||||||||||||||| | |||||||||||||||||
Sbjct 721 ACACCCATCAAAGGTGATTTCCTGTCAACGAAGAGTAAACAGCTGCGTTTGGTTCATCGT 780
Query 780 ACCGTAAGCCTTGACGATATTAAGCTAATCAAGAACGCCATGAACATGAC-AGTCAACGA 838
|| || |||||||||||||| ||||||| ||||||||| ||||||||||| | |||||||
Sbjct 781 ACTGTGAGCCTTGACGATATCAAGCTAACCAAGAACGCAATGAACATGACTA-TCAACGA 839
Query 839 TGTTGTACTTGGAGTGACCCAAGCTAGTCTCTCGCAATACCTTgagagaagatacggaga 898
||||||||||||||| ||||||||| ||||||||| |||||||| |||||||||||||||
Sbjct 840 TGTTGTACTTGGAGTAACCCAAGCTGGTCTCTCGCGATACCTTGCGAGAAGATACGGAGA 899
Query 899 aaga-gaaactaaga---ggaag-agaaaaaatctgcctaaaagaataagGCTAAGATCA 953
| || |||||||| | ||||| | |||||| |||||||| ||||||||||||||||||
Sbjct 900 A-GAAGAAACTAAAAATAGGAAGCA-AAAAAAGCTGCCTAAGAGAATAAGGCTAAGATCA 957
Query 954 GCTCTGCTTGTAAACTTAAGACCCACAACTGGAATCCAGGATATAGCCGATATGATGGAG 1013
|||||||||||||||||| |||| |||||||||||||||||| |||| ||||||||||||
Sbjct 958 GCTCTGCTTGTAAACTTACGACCAACAACTGGAATCCAGGATCTAGCAGATATGATGGAG 1017
Query 1014 AACGGGTCCAAATGTAGGTGGGGAAATTGGTTCGGGTATATAGTATTCCCGTTTTCTATC 1073
|| ||||| |||||||||||||||||||||||||| ||| ||||||| ||||||||||||
Sbjct 1018 AAAGGGTCTAAATGTAGGTGGGGAAATTGGTTCGGCTATGTAGTATTTCCGTTTTCTATC 1077
Query 1074 GCATTACGCGATGACCCATTGGAACATCTCAAAAGAGCCCAGAAGATCATCACTCGTAAG 1133
||||||||||||||||||||||||||||| ||| ||| ||||||| ||||| ||| |||
Sbjct 1078 GCATTACGCGATGACCCATTGGAACATCTTGAAATAGCTCAGAAGACCATCAGTCGAAAG 1137
Query 1134 AAGAACTCATTCGGGGCAATGCTAACATACATTTTCTGTAGAATCATTGTCAAATTCCTT 1193
||||| |||| ||| ||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 1138 AAGAATTCATACGGCGCAATGCTAACATACATATTCTGTAGAATCATTGTCAAATTGCTT 1197
Query 1194 GGAATTCA-GTTGGCGGCTACTATAATAAACAGAATGGTGTCAAACACAACGATGACGTT 1252
||||| || | ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1198 GGAAT-CAAGGTGGCGGCTAGTATAATAAACAGAATGGTGTCAAACACAACGATGACGTT 1256
Query 1253 TTCGAACATGGTTGGTCCCGTTGAACAAGTTAGCTTCTATGGACATCCCATCACTTACTT 1312
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1257 TTCGAACATGGTTGGTCCCGTTGAAGAAGTTAGCTTCTATGGACATCCCATCACTTACTT 1316
Query 1313 TGCCTCAAGTGGTTATGGTCATCCCCATGCATTGACGATAAATTGTCAAAGTTATATGAA 1372
||||||||||| |||||| ||||||||||| ||||||||| |||||||||||||||||||
Sbjct 1317 TGCCTCAAGTGCTTATGGCCATCCCCATGCGTTGACGATACATTGTCAAAGTTATATGAA 1376
Query 1373 TAAGATGACAATAACACTAATCGTAGATTCAACGGTGATAAGTGATCCTCATCGGCTCTG 1432
|||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 1377 TAAGATGACAATTACACTAATCGTAGATCCAACGGTGATAAGTGATCCTCATCGGCTTTG 1436
Query 1433 TGACGATTGGCAGGAATCTCTCCGAAGCATTAAAGCCGCTGTC-CAGAAAAGAGGGTCTC 1491
|||||| ||| | |||||||||||||||||||||||||||||| || ||||||| |||||
Sbjct 1437 TGACGACTGGGAAGAATCTCTCCGAAGCATTAAAGCCGCTGTCACA-AAAAGAGAGTCTC 1495
Query 1492 TCGGTTTGTGGGATTATCTCAGGCTTCTC-AGCAATAGAATGGCTTGGCTACTTTACCAA 1550
|| |||||||||||||||||||| ||||| | ||||||| ||||||||||||||||||||
Sbjct 1496 TCCGTTTGTGGGATTATCTCAGGATTCTCCA-CAATAGAGTGGCTTGGCTACTTTACCAA 1554
Query 1551 ATGGCTGGACTACTATACAAAATGCTTTGATGC-TAAATTTGGGAT 1595
|| ||||| ||||| |||| |||||| |||| | ||||||||||||
Sbjct 1555 ATCGCTGGGCTACTTTACAGAATGCTATGATACCTAAATTTGGGAT 1600
Score = 126 bits (68), Expect = 6e-28
Identities = 77/81 (95%), Gaps = 1/81 (1%)
Strand=Plus/Plus
Query 1596 ATATCTCTCAATATAATTCCAAAAATGTGTAGAAACAACAATAAAA-GCTTTCAATTGGA 1654
|||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1647 ATATCTCTTAATGTAATTCCAAAAATGTGTAGAAACAACAATAAAAAGCTTTCAATTGGT 1706
Query 1655 ACCACCGATTTGTTCTTCTTC 1675
|||||||||||||||||||||
Sbjct 1707 ACCACCGATTTGTTCTTCTTC 1727
> AT3G49180.1 | Symbols: RID3 | Transducin/WD40 repeat-like superfamily
protein | chr3:18229749-18232004 FORWARD LENGTH=1508
Length=1508
Score = 126 bits (68), Expect = 6e-28
Identities = 77/81 (95%), Gaps = 1/81 (1%)
Strand=Plus/Minus
Query 1596 ATATCTCTCAATATAATTCCAAAAATGTGTAGAAACAACAATAAAA-GCTTTCAATTGGA 1654
|||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1429 ATATCTCTTAATGTAATTCCAAAAATGTGTAGAAACAACAATAAAAAGCTTTCAATTGGT 1370
Query 1655 ACCACCGATTTGTTCTTCTTC 1675
|||||||||||||||||||||
Sbjct 1369 ACCACCGATTTGTTCTTCTTC 1349
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82780698705
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5