BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485280
Length=1961
Score E
Sequences producing significant alignments: (Bits) Value
AT3G49220.1 | Symbols: | Plant invertase/pectin methylesterase... 3110 0.0
> AT3G49220.1 | Symbols: | Plant invertase/pectin methylesterase
inhibitor superfamily | chr3:18249776-18253839 FORWARD LENGTH=2053
Length=2053
Score = 3110 bits (1684), Expect = 0.0
Identities = 1872/1964 (95%), Gaps = 7/1964 (0%)
Strand=Plus/Plus
Query 1 AATGTAAATCAAAAGAGAACTAAACCAAGAAACAAAAATGGGATACGAAAGGCTCGGACC 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 29 AATGTAAATCAAAAGAGAACTAAACCAAGAAAC-AAAATGGGATACGAAAGGCTCGGACC 87
Query 61 ATCTGGAGCAACTGGTTCGGTC-CCAATCTCCACTACTACAGCTCCGATCCTAAACCAAG 119
||| |||||||||||||||||| || | |||||||||||||||||| ||||| |||||||
Sbjct 88 ATCCGGAGCAACTGGTTCGGTCACC-ACCTCCACTACTACAGCTCCAATCCTTAACCAAG 146
Query 120 TCTCCACGTCATCA-CAACCGGAGAACAACAACCGGAGAAGCAAAAAGAAGCTTGTAGTG 178
||||||||||| | |||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 147 TCTCCACGTCA-GAGCAACCGGAGAACAACAACCGAAGAAGCAAAAAGAAGCTTGTCGTA 205
Query 179 TCATCAATCGTCTTAGCCATCTCACTTATCCTCGCCGCCGCGATCTTCGCCGGAGTCAGA 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 206 TCATCAATCGTCTTAGCCATCTCACTTATCCTCGCCGCCGCGATCTTCGCCGGAGTCAGA 265
Query 239 TCACGTCTCAAGTTAAACCAATCTGTTCCAGGCCTAGCTCGTAAACCAAGCCAAGCAATC 298
||||||||||||||||||||||| || |||||||||||||||||||| || |||||||||
Sbjct 266 TCACGTCTCAAGTTAAACCAATCAGTCCCAGGCCTAGCTCGTAAACCGAGTCAAGCAATC 325
Query 299 TCTAAAGCTTGTGGGTTAACTCGTTTCCCCGAGTTATGCGTTGACTCACTCATGGACTTT 358
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 326 TCTAAAGCTTGTGAGTTAACTCGTTTCCCCGAGTTATGCGTTGACTCACTCATGGACTTT 385
Query 359 CCCGGCTCACTCGCCGCTTCCTCCTCCAAAGATCTGATCCACGTGACGGTTAACATGACG 418
|||||||||||||||||||||||||| |||||||| ||||||||||| || |||||||||
Sbjct 386 CCCGGCTCACTCGCCGCTTCCTCCTCTAAAGATCTCATCCACGTGACTGTGAACATGACG 445
Query 419 CTCCACCACTTCAGTCGCGCTCTCTACTCCTCTGCTTCCCTCTCCTTCGTCGACATGCCG 478
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 446 CTCCACCACTTCAGCCACGCTCTCTACTCCTCTGCTTCCCTCTCCTTCGTCGACATGCCG 505
Query 479 CCACGTGCTCGCTCAGCTTACGACTCTTGCGTCGAGCTACTAGATGATTCCGTCGACGCG 538
||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||
Sbjct 506 CCACGTGCTCGCTCAGCTTACGACTCTTGCGTCGAGCTACTTGACGATTCCGTTGACGCG 565
Query 539 CTCTCACGCGCTCTCTCCTCCGTCGTATCGTCCTCGGCCAAGCCACAAGACGTTACCACG 598
|| ||||||||||| |||||||||||||| ||||| || ||||| ||||| ||||| |||
Sbjct 566 CTATCACGCGCTCTTTCCTCCGTCGTATCCTCCTCCGCTAAGCCGCAAGATGTTACAACG 625
Query 599 TGGCTTAGCGCGGCTTTAACGAACCATGACACGTGCACTGAAGGATTCGACGGCGTCGAC 658
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 626 TGGCTTAGCGCGGCTTTAACAAACCATGACACGTGTACTGAAGGATTCGACGGCGTCGAC 685
Query 659 GACGGTGGAGTGAAGGATCATATGACAGCGGCGATAAAGAATCTTTCTGAGCTTGTTAGT 718
|||||||||||||||||||||||||| |||||| || |||||||||||||||||||||||
Sbjct 686 GACGGTGGAGTGAAGGATCATATGACGGCGGCGTTACAGAATCTTTCTGAGCTTGTTAGT 745
Query 719 AACTGTCTTGCTATATTCTCGGCGAGCCACGACGGTGACGATTTCGCCGGAGTTCCGATA 778
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 746 AACTGTCTTGCTATATTCTCGGCGAGTCACGACGGTGACGATTTCGCCGGAGTTCCAATA 805
Query 779 CAGAACAGGAGACTGTTGGGAGTGGAGGAACGAGAAGAGAAATTCCCGAGATGGATGAGG 838
||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 806 CAGAACAGGAGGCTGCTGGGAGTGGAGGAACGAGAAGAGAAATTCCCGAGATGGATGAGA 865
Query 839 CCAAGAGAACGCGAGATATTGGAAATGCCGGTATCTCAGATACAAGCTGATATTATCGTC 898
|||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 866 CCAAAAGAACGCGAGATACTGGAAATGCCGGTATCTCAGATACAAGCTGATATTATCGTA 925
Query 899 TCGAAAGACGGCAACGGCACGTGCAAAACTATATCGGAAGCTATCAAGAAAGCTCCTCAG 958
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 926 TCGAAAGACGGTAACGGCACGTGCAAAACTATATCGGAAGCTATCAAGAAAGCTCCTCAG 985
Query 959 AACAGTACTCGCCGGATAATTATCTATGTCAAGGCCGGAAGGTATGAAGAGAACAACCTC 1018
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 986 AACAGTACTCGCCGGATAATTATCTACGTCAAGGCCGGAAGATATGAAGAGAACAACCTC 1045
Query 1019 AAGGTCGGTAGGaaaaaaaTAAATTTGATGTTCGTTGGAGATGGGAAGGGTAAAACTGTC 1078
|||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 1046 AAGGTCGGTAGGAAAAAAATTAATTTGATGTTCGTTGGAGATGGCAAGGGTAAAACTGTT 1105
Query 1079 ATTTCGGGAGGGAAAAGTATATTTGACAACATCACTACTTTCCACACGGCGTCATTTGCT 1138
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1106 ATTTCGGGAGGCAAAAGTATATTTGACAACATCACTACTTTCCACACGGCGTCATTTGCT 1165
Query 1139 GCGACCGGAGCTGGATTTATTGCAAGGGACATCACATTCGAAAATTGGGCTGGTCCAGCG 1198
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 1166 GCGACCGGAGCTGGATTTATTGCAAGGGACATCACATTCGAAAACTGGGCCGGTCCAGCG 1225
Query 1199 AAGCACCAAGCGGTGGCTCTCCGTATTGGGGCTGACCACGCAGTGATCTACCGATGCAAT 1258
||||||||||| ||||||||||| || || ||||||||||||||||||||||||||||||
Sbjct 1226 AAGCACCAAGCCGTGGCTCTCCGCATCGGAGCTGACCACGCAGTGATCTACCGATGCAAT 1285
Query 1259 ATAATCGGTTACCAAGACACACTTTACGTTCATTCAAACCGTCAATTCTTTCGTGAATGC 1318
||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||
Sbjct 1286 ATAATCGGTTACCAAGACACACTCTACGTCCATTCAAACCGCCAATTCTTTCGTGAATGC 1345
Query 1319 GATATCTACGGTACAGTCGATTTTATCTTTGGTAATGCAGCCGTCGTACTACAAAACTGT 1378
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1346 GATATCTACGGTACAGTCGATTTTATCTTTGGTAACGCAGCCGTCGTACTACAAAACTGT 1405
Query 1379 AGCATCTACGCACGAAAGCCCATGGATTTTCAGAAAAATACAATCACGGCTCAAAACAGA 1438
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1406 AGCATCTACGCACGGAAGCCAATGGATTTTCAGAAAAATACAATCACGGCTCAAAACAGA 1465
Query 1439 AAAGATCCGAACCAAAACACCGGAATATCGATACATGCGTCTAGGGTTCTTGCAGCATCC 1498
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1466 AAAGATCCGAACCAAAACACCGGAATATCAATACATGCGTCTAGGGTTCTTGCAGCATCC 1525
Query 1499 GATCTCCAAGCGACAAACGGTAGTACCCAGACGTATCTAGGCCGACCTTGGAAGCTATTC 1558
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1526 GATCTCCAAGCGACAAACGGTAGTACACAGACGTATCTAGGCCGACCTTGGAAGCTATTC 1585
Query 1559 TCTAGGACGGTGTATATGATGTCGTATATCGGTGGTCATGTACACACGAGAGGTTGGCTC 1618
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1586 TCTAGGACAGTGTATATGATGTCGTATATCGGTGGTCATGTACACACGAGAGGTTGGCTC 1645
Query 1619 GAGTGGAACACAACATTTGCTTTAGATACGTTATATTACGGAGAGTATTTGAACAGTGGA 1678
||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||
Sbjct 1646 GAGTGGAACACAACATTTGCTTTAGATACTTTGTATTATGGAGAGTATTTGAACAGTGGA 1705
Query 1679 CCGGGGTCAGGTCTCGGGCAACGTGTGACCTGGCCGGGGTATCGGGTCATCAATTCGACG 1738
|| ||||| ||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct 1706 CCTGGGTCGGGTCTCGGGCAACGTGTGAGCTGGCCGGGTTATCGGGTCATCAATTCGACG 1765
Query 1739 GCCGAGGCTAACCGGTTCACGGTGGCTGAATTTATATACGGTTCGTCGTGGTTGCCTTCG 1798
|||||||| ||||||||||| ||||| ||||||||||||||||| ||||||||||| |||
Sbjct 1766 GCCGAGGCAAACCGGTTCACTGTGGCAGAATTTATATACGGTTCCTCGTGGTTGCCATCG 1825
Query 1799 ACCGGAGTTTCGTTCTTGGCCGGATTAAGCATATAGGTAGAGGGAAAAAT-GAAATGCTT 1857
|||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 1826 ACCGGAGTTTCGTTCTTGGCCGGATTAAGCATATAGGTAGAGA-AAAAATTGAAATGCTT 1884
Query 1858 ATGTTTCCGATGAATTGTTTCATTCTTACGGTCCTTATAATAATGGACATATCATTAATC 1917
|| |||||||||||||||||||||||||||||||||||| |||||||||||||| || ||
Sbjct 1885 ATTTTTCCGATGAATTGTTTCATTCTTACGGTCCTTATATTAATGGACATATCAGTATTC 1944
Query 1918 CTATATATATGAGTATATTTTAACTTTTAATTGTACTATCTCCA 1961
| ||||||||||||||||||||||||||||||||| | ||||||
Sbjct 1945 CAATATATATGAGTATATTTTAACTTTTAATTGTAATGTCTCCA 1988
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97138054575
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5