BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485281
Length=1610
Score E
Sequences producing significant alignments: (Bits) Value
AT2G04230.1 | Symbols: | FBD, F-box and Leucine Rich Repeat do... 2141 0.0
AT3G49030.1 | Symbols: | FBD, F-box and Leucine Rich Repeat do... 1002 0.0
AT3G49020.1 | Symbols: | FBD, F-box and Leucine Rich Repeat do... 880 0.0
AT3G49040.1 | Symbols: | F-box/RNI-like superfamily protein | ... 335 9e-91
> AT2G04230.1 | Symbols: | FBD, F-box and Leucine Rich Repeat
domains containing protein | chr2:1446864-1449100 REVERSE LENGTH=1930
Length=1930
Score = 2141 bits (1159), Expect = 0.0
Identities = 1362/1460 (93%), Gaps = 13/1460 (1%)
Strand=Plus/Plus
Query 111 AAAAAATCGGAAGGTTTCTTAGCGAATTGTTACCTCTATTAATTTCAATGGAACAGAAAT 170
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 376 AAAAAATCTGAAAGTTTCTTAGCGAATTGTTACCTCTATTAATTTCAATGGAACAGAAAT 435
Query 171 TCAAAACCGATGCTATGAATGAGGACAGAATCAGTGAGTTGCCTGATGCTTTGCTTTTGC 230
||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| | |
Sbjct 436 TCAAAACCGATTCTATGAATGAGGACAGAATCAGTGACTTGCCTGATGCTTTGCTTCTAC 495
Query 231 ATATATTGTCTTCACTTCCGACAGAAAACGCCATAGCCACTAGTGTTTTGTCTAAACGTT 290
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 496 AGATATTGTCTTCACTTCCGACAGAAAACGCCATAGCCACGAGTGTTTTGTCTAAACGTT 555
Query 291 GGAGATCTCTTTGGAAGATGTTGCCAAAACTCAAGTTTGACTGCAACTTT-AATCCTGTG 349
||||||||||||||| ||||||||||||||||||||||| | ||| ||| |||||||||
Sbjct 556 GGAGATCTCTTTGGACTATGTTGCCAAAACTCAAGTTTGATTCCAA-TTTCAATCCTGTG 614
Query 350 CTTGATGATTATAACATAGATCCCCA-TGTGTTTTCAGAGAATGTTTACAGGACCTTGAG 408
|||||||| ||||||||||| |||| | ||||||||||||||||||||| ||| |||
Sbjct 615 TTTGATGATGATAACATAGAT-CCCACTATGTTTTCAGAGAATGTTTACAAGACTTTGTC 673
Query 409 TTTACATAAAGCTCCGGTTCTAGAGAGTTTGCATTTGTCATTTGAAGGTAGAACTGATTG 468
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 674 TTTACATAAAGCTCCGGTTCTAGAGAGTTTGCATTTGTCATTTGAAGGTAGAACAGATTG 733
Query 469 TTTGGATGTTGGAATATGGATCGCAACCGCATTTGCTCGCCGTGTGCGTAAATTGGTATT 528
|||| |||||||||||||||| ||||| |||||||||||| |||||||||||||||||||
Sbjct 734 TTTGCATGTTGGAATATGGATTGCAACAGCATTTGCTCGCGGTGTGCGTAAATTGGTATT 793
Query 529 GGATAGTTTCTATCAAGAGGATCAGACTGTCACGCTTCCGAGTGTTTTGTTTAGCTATAA 588
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 794 GGATAGTTTCTATCAAGAGGATCAAACTGTCACGCTTCCTAGTGTTTTGTTTAGCTATAA 853
Query 589 TGATACACTTGAGATCTTGAAACTCAAGTATGCTATTGATTTAGAGTTTCCTTCTCGGGT 648
|||| |||||||||||||||||||||||| |||||| |||||||| ||||||||||||||
Sbjct 854 TGATTCACTTGAGATCTTGAAACTCAAGTGTGCTATCGATTTAGACTTTCCTTCTCGGGT 913
Query 649 TTGTTTGAAGTCTCTTAGAAAGCTGCACCTTTACCATGTACACTTCAAAGACGAAGAATC 708
|||||||||||||||||||||||| ||||| |||| ||||| |||||||||||||||||
Sbjct 914 TTGTTTGAAGTCTCTTAGAAAGCTATACCTTGACCAAGTACATTTCAAAGACGAAGAATC 973
Query 709 TGTTTGCAACCTTTTATGTGGCTGCCCTAGTCTTCAAGATTTGGTCGTGCATAGATATAG 768
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 974 TGTTTGCAATCTTTTATGTGGCTGCCCTAGTCTTCAAGATTTGGTCGTGCATAGATATAG 1033
Query 769 CAATGCCGATGTGGCGACTTTCACTATTGCGGCGCCATCATTACAGAGATTGACCATAGA 828
|||||||||||||||||||||||| |||||| |||| |||||||| ||||||||||||||
Sbjct 1034 CAATGCCGATGTGGCGACTTTCACAATTGCGTCGCCGTCATTACAAAGATTGACCATAGA 1093
Query 829 AGATCTTCGCCAAGAAGGAGGTTATGGAAATGGAGGCTATGTTATAAATGCCCCTGCTTT 888
||||||| | |||||||||||||||||||||||| ||||||| ||||||||||||| |||
Sbjct 1094 AGATCTTAGACAAGAAGGAGGTTATGGAAATGGAAGCTATGTGATAAATGCCCCTGGTTT 1153
Query 889 GAAATACTTGGACATCAACGGGTTTATTGATATTGAGTCTTGTCTGATTGACAAGGCACT 948
|||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 1154 GAAATACTTGAACATCAACGGGGTTATTGATATTGAGTCTTGTTTGATTGACAAGGCACT 1213
Query 949 AGAGCTAGTGGAGGCAAAGATCAGTGACGTTTCTGATATAGCTAATGAGAACATTCTGGA 1008
|||| ||| ||||||||| |||||| ||||||||| |||| | |||||||||||||||||
Sbjct 1214 AGAGTTAGAGGAGGCAAAAATCAGTAACGTTTCTGGTATAACCAATGAGAACATTCTGGA 1273
Query 1009 GTCTCTAACTTCAGCCAAACGTCTTATTTTACACTTATCACCCCTTGAGATTAAAGTTCC 1068
||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 1274 GTCTCTAACTTCAGCCAAACGTCTTATCTTACACTTATCACCCCTTGAGGTTAAAGTTCC 1333
Query 1069 TACTGGTAAAATCTTCGATCAGCTAGTTTGTCTAGAGCTACTTACACACGAAAGAGAGTG 1128
||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 1334 TACTGGTAAAATCTTCGATCAACTAGGCTGTCTAGAGCTACTTACACACGAAAGAGAGTG 1393
Query 1129 GTGGAATCTGCTTTCGATCATGCTCGATAGTTCTCCTAAATTACAAATCCTCAAGCTCAC 1188
|||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 1394 GTGGAATCTGCTTTCGATCATGCTTGATAGTTCTCCTAAACTACAAATCCTCAAGCTCAC 1453
Query 1189 AGATTTCTATCTGCGTGACAACaaaaaaaaTCCGGACGAACGAAAATGGAATCCACCTAA 1248
||| | ||||||| ||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 1454 GGATGTATATCTGCATGACAACAAAACAAATCCGGACGAACGAAAATGGAATCCACCAAA 1513
Query 1249 ATGTGTACCGGAATGTTTGTTGTTCCATCTTGAGACATTCGTGTGGATAGGATACGAATG 1308
||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 1514 ATGTGCACCGGAATGTTTGTTGTTCCATCTTGAGACATTCTTGTGGATAGGATATGAATG 1573
Query 1309 GCAACGAGGAGATGAGAAAGAAGTGGCCACATACATCCTAGAAAACGCAAGACGGTTGAA 1368
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1574 GCAACGAGGTGATGAGAAAGAAGTTGCCACATACATCCTAGAAAACGCAAGACGGTTGAA 1633
Query 1369 GAAAGCAACTTTCTCCACAAAACGCAT-GGAGGGGGAAAAGCTCGAA-AGGTTGGAAAAG 1426
||||||||||||||||||||||||||| ||| ||| ||||||||||| | ||| | |||
Sbjct 1634 GAAAGCAACTTTCTCCACAAAACGCATCGGAAGGG-AAAAGCTCGAAGATTTTG-AGAAG 1691
Query 1427 AGACGTGAGATGCTCAACGAGTTGGCTAGTGTGCTCTGGGATTCATATTCATGTCACCTT 1486
|| ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 1692 AGGCGTGAGATGCTCAACGAGTTGGCTATTGTGCTCTGGGATTCAAATTCATGTCACCTT 1751
Query 1487 GTGTTCGAATCTACTTAATATCTTAGACTTTTATTCTGTTGTTTTGGCCATTGGGAAATG 1546
|||||||||||||||||||||||||||||| |||| | | ||| |||||||||||||||
Sbjct 1752 GTGTTCGAATCTACTTAATATCTTAGACTTGTATT-T-T-GTT--GGCCATTGGGAAATG 1806
Query 1547 TAAAATTGACTGCTCTACCA 1566
| | ||| |||||||||||
Sbjct 1807 TTTACTTGGCTGCTCTACCA 1826
> AT3G49030.1 | Symbols: | FBD, F-box and Leucine Rich Repeat
domains containing protein | chr3:18173138-18174769 FORWARD
LENGTH=1332
Length=1332
Score = 1002 bits (542), Expect = 0.0
Identities = 1088/1341 (81%), Gaps = 79/1341 (6%)
Strand=Plus/Plus
Query 179 GATGCTATGAATGAGGACAGAATCAGTGAGTTGCCTGATGCTTTGCTTTTGCATATATTG 238
||||| |||| |||||| ||||||||||||||||||| | ||||||| | || ||||||
Sbjct 46 GATGCCGTGAAGGAGGACCGAATCAGTGAGTTGCCTGAAGATTTGCTTCTACAGATATTG 105
Query 239 TCTTCA-CTTCCGACAGAAAACGCCATAGCCACTAGTGTTTTGTCTAAACGTTGGAGATC 297
|| | | |||| |||||||| | ||||||||| ||||||||||||||||||||||||||
Sbjct 106 TC-TGATATTCCAACAGAAAATGTCATAGCCACGAGTGTTTTGTCTAAACGTTGGAGATC 164
Query 298 TCTTTGGAAGATGTTGCCAAAACTCAAGTTTGACTGCAACTTTAATCCTGTGCTTGATGA 357
||||||||||||| ||||||| |||| |||||| | ||| | | || |||||
Sbjct 165 TCTTTGGAAGATGGTGCCAAATCTCACGTTTGA-T-----TTT-A--C-GT--TTGAT-- 210
Query 358 TTATAACATAGATCCCCATGTGTTTTCAGAGAATGTTTACAGGACCTTGAGTTTACATAA 417
| || | ||| ||| |||||||||||| |||||||| | |||| || |||| |
Sbjct 211 CCA-AA-GT--ATCACCAAACATTTTCAGAGAATCTTTACAGGTCTTTGACTTCACATGA 266
Query 418 AGCTCCGGTTCTAGAGAGTTTGCATTTGTCATTTGA-AGGTAGAACTGATTGTTTGGATG 476
|||| |||||||||| |||||||| ||| |||| | | || ||| |||| ||||| ||
Sbjct 267 AGCTTCGGTTCTAGAAAGTTTGCAATTG-AATTTCACACGTGGAATTGATGGTTTGAATA 325
Query 477 TTGGAATATGGATCGCAACCGCATTTGCT-CGCCGTGTGCGTAAATTGGTATTGGATAGT 535
||||||| ||||| ||||| |||| || | || | ||| |||||||||||||||| ||||
Sbjct 326 TTGGAATGTGGATTGCAACTGCATATG-TACGTCATGTTCGTAAATTGGTATTGGTTAGT 384
Query 536 TTC--T-ATCAAGAG-GATCAGACTGTC-ACG-CTTCCGAGTGTTTTGTTTAGCTAT-AA 588
||| | || | | ||| ||| | | | | ||| ||||| |||||||| || | ||
Sbjct 385 TTCGGTGAT-GTGCGTGATAAGA-GGGCTA-GATTTCGGAGTGCTTTGTTTAACT-TCAA 440
Query 589 TGATACACTTGAGATCTT-GAAACTCAAGTATGCTATTGATTTAGAGTTTCCTTCTCGGG 647
|||||||||||| || || |||| || || || |||| |||||| ||||||||| ||
Sbjct 441 TGATACACTTGACATTTTGGAAA-TCCAGGATTATATTCTTTTAGACCTTCCTTCTCCGG 499
Query 648 TTTGTTTGAAGTCTCTTAGAAAGCTGCACCTTTACCATGTACACTTCAAAGACGAAGAAT 707
|||| |||||||| |||||| |||||| ||| ||| | ||||||||||||||||||| ||
Sbjct 500 TTTGCTTGAAGTCCCTTAGAGAGCTGCGCCTATACGAAGTACACTTCAAAGACGAAGCAT 559
Query 708 CTGTTTGCAACCTTTTATGTGGCTGCCCTAGTCTTCAAGATTTGGT-CGTGCATAGATAT 766
||||||||||||||||||| ||||||||||||||| ||| ||| || |||||||||| |
Sbjct 560 CTGTTTGCAACCTTTTATGCGGCTGCCCTAGTCTTGAAG-TTTTGTCCGTGCATAGAGA- 617
Query 767 A-GCAATGCCGATGTGGCGACTTTCACTATTGCGGCGCCATCATTACAGAGATTGACCAT 825
| |||||| |||||||| |||||| ||||||| || |||||||||||||||| | |||||
Sbjct 618 ACGCAATGTCGATGTGGAGACTTTTACTATTGTGGTGCCATCATTACAGAGACTAACCAT 677
Query 826 AGAAGATCTTCGCCAAGAAGGAGGTTATGGAAATGGAGGCTATGTTATAAATGCCCCTGC 885
| | ||| || | | | |||||| | || || ||||||||||| |||||||| ||| |
Sbjct 678 ATATGATTTTTG-C-A-TAGGAGG--A-GGTAAGGGAGGCTATGTGATAAATGCTCCTTC 731
Query 886 TTTGAAATACTTGGACA-TCAACGGGTT-TATTGATATTGAGTCTTGTCTGATTGACAAG 943
||||||||||||| ||| | | ||||| | | |||| | |||| ||||||| ||
Sbjct 732 TTTGAAATACTTGAACATTGTA-GGGTTCGA-GGGGCTTGATTTTTGTTTGATTGAGAAT 789
Query 944 GCACTAGAGCTAGTGGAGGCA-AAGATCAGTGACGTTTCTGATATAGCTAATGAGAACAT 1002
|| | |||||| ||||||||| || ||||||||||||||| |||||||||||||||||||
Sbjct 790 GCGCCAGAGCTGGTGGAGGCAGAA-ATCAGTGACGTTTCTCATATAGCTAATGAGAACAT 848
Query 1003 TCTGGAGTCTCTAACTTCAGCCAAACGTCTTAT-TTTACACTTATCACCCCTTGAGATTA 1061
||| || ||||||||||||| ||||||| | | ||| | ||| || | ||||||
Sbjct 849 TCTAGAATCTCTAACTTCAGTGAAACGTC-TGTCCTTAGA---ATCGCCAATAAAGATTA 904
Query 1062 AAGTTCCTACTGGTAAAATCTTCGATCAGCTAGTTTGTCTAGA-GCTACTTACACACGAA 1120
|| ||||||| |||||| |||||||||||||||||| | |||| | | |||||| | |||
Sbjct 905 AATTTCCTACCGGTAAAGTCTTCGATCAGCTAGTTTATTTAGATG-TGCTTACAAAAGAA 963
Query 1121 AGAGAGTGGTGGAATCTGCTTTCGATCATGCTCGATAGTTCTCCTAAATTACAAATCCTC 1180
||||||||||||||||||||||||| ||||| || |||||||||||||| |||||||||
Sbjct 964 AGAGAGTGGTGGAATCTGCTTTCGAGAATGCTTGAGAGTTCTCCTAAATTGCAAATCCTC 1023
Query 1181 AAGCTCACAGATTTCTATCTGCGTGACAACaaaaaaaaTCCGGACGAACGA-AAATGGAA 1239
|||||||| | |||||| || | | ||||| || || | || | || |||||
Sbjct 1024 AAGCTCACCG--GGCTATCT---TG-TATCGAAAAAGGTCTAGATGGAC-AGAATTGGAA 1076
Query 1240 TCCACCTAAATGTGTACCGGAATGTTTGTTGTTCCATCTTGAGACATTCGTGTGGATAGG 1299
|||||| ||||||||||||||||||||||||||||||||||||| |||| |||||| |||
Sbjct 1077 TCCACCAAAATGTGTACCGGAATGTTTGTTGTTCCATCTTGAGAAATTCTTGTGGACAGG 1136
Query 1300 ATACGAATGGCAACGAGGAGATGAGAAAGAAGTGGCCACATACATCCTAGAAAACGCAAG 1359
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1137 ATACGAATGGCAACGAGGAGATGAGAAAGAAGTGGCCACATACATACTAGAAAACGCAAG 1196
Query 1360 ACGGTTGAAGAAAGCAACTTTCTCCACAAAACGCATGGAGGGGGAAAAGCTCGAAAGGTT 1419
|| ||||||||||||||||||||||||||||||||| || |||||| |||||||
Sbjct 1197 ACTGTTGAAGAAAGCAACTTTCTCCACAAAACGCATTGATCTGGAAAATCTCGAAA---- 1252
Query 1420 GGAAAAGAGACGTGAGATGCTCAACGAGTTGGCTAGTGTG-CTCTGGGATTCATATTCAT 1478
| |||||||||||||||||||||||||||||||||| | | | | |||| ||||||
Sbjct 1253 --A---GAGACGTGAGATGCTCAACGAGTTGGCTAGTGTGGC-CAGAGCTTCAGATTCAT 1306
Query 1479 GTCACCTTGTGTTCGAATCTA 1499
|||| ||||||||| | ||||
Sbjct 1307 GTCATCTTGTGTTCCATTCTA 1327
> AT3G49020.1 | Symbols: | FBD, F-box and Leucine Rich Repeat
domains containing protein | chr3:18169079-18170660 FORWARD
LENGTH=1344
Length=1344
Score = 880 bits (476), Expect = 0.0
Identities = 1066/1338 (80%), Gaps = 92/1338 (7%)
Strand=Plus/Plus
Query 191 GAGGACAGAATCAGTGAGTTGCCTGATGCTTTGCTTTTGCAT-ATATTGTCTTCACTTCC 249
|||||||| ||||||||||||||||| || |||||| ||| | |||||||| ||||||||
Sbjct 61 GAGGACAGGATCAGTGAGTTGCCTGAAGCGTTGCTTCTGC-TCATATTGTCGTCACTTCC 119
Query 250 GACAGAAAAC-GCCATAGCCACTAGTGTTTTGTCTAAACGTTGGAGATCTCTTTGGAAGA 308
|||| |||| | || |||||||||||||||||||||| |||| |||||||||||||
Sbjct 120 AACAG-AAACTGTGATTGCCACTAGTGTTTTGTCTAAACAATGGAAATCTCTTTGGAAGT 178
Query 309 TGTTGCCAAAACTCAAGTTTGACTGCAACTTTAATCCTGTGCTTGATGATTATAACATAG 368
|| ||||||| ||||||||||| | | ||| | | || ||||| |||
Sbjct 179 TGGTGCCAAATCTCAAGTTTGA-T-----TCTAA------G--T-ATCATTAT--CAT-- 219
Query 369 ATCCCCATGTGTTTTCAGAGAATGTTTACAGGACCTTGAGTTT-ACATAAAGCTCCGGTT 427
| || ||||||||| ||||||| |||| | |||| ||| |||||||||||| |||
Sbjct 220 -T----ATACGTTTTCAGATAATGTTTTCAGGTCTTTGA-TTTCACATAAAGCTCCTGTT 273
Query 428 CTAGAGAGTTTGCATTTGTCATTTGAAGGT-AGAACTGATTG-TTTGGATGTTGGAATAT 485
||||| |||||||||||| | |||||| | || | ||| || |||||||||||| ||||
Sbjct 274 CTAGATAGTTTGCATTTGAAAGTTGAAGATAAGGA-TGA-TGCTTTGGATGTTGGGATAT 331
Query 486 GGATCGCAACCGCATTTGCTCGCCGTGTGCGTAAATTGGTATTGGATAGTTTCTA-T-CA 543
||| | || |||||| | |||| | |||||||||| ||| | || | || | | | |
Sbjct 332 TGATTGGAATTGCATTTTCCCGCCATATGCGTAAATTTGTACT-GAAAATTAC-ATTGCT 389
Query 544 AGAGGATCAGAC--TGTCACG-CTTCCGAGTGTTTTGTTTAGCTATAATGATACACTTGA 600
||||| || | ||| | | ||||||||| || || ||| | |||||||||||||||
Sbjct 390 GGAGGA-AAG-CTTTGT-AAGATTTCCGAGTGCTTGGTGTAGTTGTAATGATACACTTGA 446
Query 601 GATCTTGAAACTCAAGTA-TGCTATTGATTTAGAGTTTCCTTCTCGGGTTTGTTTGAAGT 659
|||||| |||||||||| ||| ||| |||||| |||||||||| ||||||||||||||
Sbjct 447 AATCTTGGAACTCAAGTATTGC-ATTCTTTTAGATTTTCCTTCTCTGGTTTGTTTGAAGT 505
Query 660 CTCTTAGAAAGCTGCACCTTTACCATGT-ACACTTCAAAGACGAAGAATCTGTTTGCAAC 718
|||||||||||||| | || |||||||| | | || || ||||||||||| |||||||||
Sbjct 506 CTCTTAGAAAGCTGTATCTCTACCATGTGAGA-TTTAACGACGAAGAATCCGTTTGCAAC 564
Query 719 CTTTTATGTGGCTGCCCTAGTCTTCAAGATTTGGTCGTGCATAGATATAGCAATG-CCGA 777
|||||||||||||||||||||||| |||||||||||||||||||| |||||| | ||||
Sbjct 565 CTTTTATGTGGCTGCCCTAGTCTTGAAGATTTGGTCGTGCATAGACATAGCAC-GACCGA 623
Query 778 TGTGGCGACTT-TCACTATTGCGGCGCCATCATTACAGAGATTGACCATAGAAGATC-TT 835
||||| || || | |||||||||| |||||||||||||||| | |||||| | ||| ||
Sbjct 624 TGTGGAGAGTTAT-ACTATTGCGGTGCCATCATTACAGAGACTAACCATATATGATGATT 682
Query 836 CGCCAAGAAGGAGGTTATGGAAATGGAGGCTATGTTATAAATGCCCCTGCTTTGAAATAC 895
| | | || |||| | |||||||||||| |||||||| ||| |||||||||||
Sbjct 683 A-CTATGGAGAAGGTG-T-----TGGAGGCTATGTGATAAATGCTCCTTCTTTGAAATAC 735
Query 896 TTGGACATCAACGGGTTTATTGATATTGAGTCTTGTCTGATTGACAAGGCACTAGAGCTA 955
||| ||||| ||||||||| || | |||||| |||| ||||||| ||||| | |||||||
Sbjct 736 TTGAACATCGACGGGTTTAATGGTCTTGAGTTTTGTTTGATTGAGAAGGCGCCAGAGCTA 795
Query 956 GTGGAGGC-AAAGATCAGTGACGTTTCTGATATAGCTAATGAGAACATTCTGGAGTCTCT 1014
|||||||| ||| || |||| ||||| ||| ||||| |||||||||||| |||| |||||
Sbjct 796 GTGGAGGCTAAA-ATTAGTGCCGTTTTTGAAATAGCCAATGAGAACATTATGGACTCTCT 854
Query 1015 AACTTCAGCCAAACGTCTTATT-TTACACTTATCACCCCTTGA-GATTAAAGT-TCCTAC 1071
||||||||||||| ||||| | ||||||||| |||| || | ||| ||||| ||||||
Sbjct 855 AACTTCAGCCAAATGTCTT-TCCTTACACTTAGCACCT-TTCAAGAT-AAAGTATCCTAC 911
Query 1072 TGGTAAAATCTTCGATCAGCTAGTTTGTC--TAGAGCTACTTACACAC-GAAAGAGAGTG 1128
||||||||||||| | ||||| ||| || | ||||| | | || | | | |||||
Sbjct 912 TGGTAAAATCTTCTACCAGCT--TTTATCGCTGGAGCTTCGTGCATATAGCTAT-GAGTG 968
Query 1129 GTGGAATCTGCTTTCGATCATGCTCGATAGTTCTCCTAAATTACAAATCCTCAAGCTCA- 1187
||||||||| |||| | ||||||||||||||||||| ||||||||||| || ||||||
Sbjct 969 GTGGAATCTACTTTGGTTCATGCTCGATAGTTCTCCCAAATTACAAATTCTTAAGCTCGT 1028
Query 1188 CAGATTTC-TATCTGCGTGACAACaaaaaaaaTC--CGGACGAAC-GAAAATGGAATCCA 1243
| ||| | |||| | | | | || || | | ||| | | | |||||| || |
Sbjct 1029 C-GATC-CATATCAGTTTC-CTA-AAGAAGATTGTTCGGTGGG-CTGGGAATGGAGTCGA 1083
Query 1244 CCTAAATGTGTACCGGAATGTTTGTTGTTCCATCTTGAGACATTCGTGTGGATAGGATAC 1303
|| |||||||| || |||||||||||||| |||||||||||||| ||||||| | ||||
Sbjct 1084 CCCAAATGTGTTCCTGAATGTTTGTTGTTTCATCTTGAGACATTTGTGTGGACAAGATAT 1143
Query 1304 GAATGGCAACGAGGAGATGAGAAAGAAGTGGCCACATACATCCTAGAA-AACGCAAGACG 1362
|| |||||||||| ||||||||||| |||||| ||||||||||| || || |||||| |
Sbjct 1144 GAGTGGCAACGAGAAGATGAGAAAGCAGTGGCTACATACATCCTT-AAGAATGCAAGATG 1202
Query 1363 GTTGAAGAAAGCAACTTTCTCCACAAAACGCAT-GGAGGGGGAAAAGCTCGA-AAGGTTG 1420
||||||||||||||| |||||||||||| ||| ||| | || ||||||| ||| |||
Sbjct 1203 CTTGAAGAAAGCAACTCTCTCCACAAAACCCATCGGATCTG-AAGAGCTCGAGAAG-TTG 1260
Query 1421 GAAAAGAGACGTGAGATGCTCAACGAGTTGGCTAGTGTG-CTCTGGGATTCATATTCATG 1479
| |||||||||||||||||| ||||||||||||| | | | | | |||| |||||||
Sbjct 1261 GGAAAGAGACGTGAGATGCTTAACGAGTTGGCTACTCAGGC-CAGCCCTTCAAATTCATG 1319
Query 1480 TCACCTTGTGTTCGAATC 1497
| |||| |||||||||||
Sbjct 1320 TAACCTCGTGTTCGAATC 1337
> AT3G49040.1 | Symbols: | F-box/RNI-like superfamily protein
| chr3:18177676-18179339 FORWARD LENGTH=1248
Length=1248
Score = 335 bits (181), Expect = 9e-91
Identities = 322/389 (83%), Gaps = 14/389 (4%)
Strand=Plus/Plus
Query 1123 AGAGTGGTGGAATCTGCTTTCGATCATGCTCGATAG-TTCTCCTAAATTACAAATCCTCA 1181
||||||||||||||| ||| || ||||||| || || ||||||||| || ||||||||||
Sbjct 867 AGAGTGGTGGAATCTACTTACGTTCATGCTTGA-AGCTTCTCCTAAGTTGCAAATCCTCA 925
Query 1182 AGCTCACAGATTTCTATCTG-CGTGAC-AACaaaaaaaaTCCGGA-CGAACGAAAATGGA 1238
||||||| || | || || | | | | |||| |||| | || | | |||||||
Sbjct 926 AGCTCACCGACCTAAATATGTC-T-TCTACCAAAGGAAAT-CAGATAGGCCAAAAATGG- 981
Query 1239 ATCCA-CCTAAATGTGTACCGGAATGTTTGTTGTTCCATCTTGAGACATTCGTGTGGATA 1297
||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 982 ATCCAGCCTAAATGTGTACCGGAATGTTTGTTATTCCATCTTGAGACATTCGTGTGGACA 1041
Query 1298 GGATACGAATGGCAACGAGGAGATGAGAAAGAAGTGGCCACATACATCCTA-GAAAACGC 1356
|||||||||||||||||| ||||||||||||||||||| | |||||||||| |||| | |
Sbjct 1042 GGATACGAATGGCAACGAAGAGATGAGAAAGAAGTGGCGAGATACATCCTAAGAAA-CAC 1100
Query 1357 AAGACGGTTGAAGAAAGCAACTTTCTCCACAAAACGCATGGAGGGGGAAAAGCTCGAAAG 1416
|| | | |||||||||||||||||||||||||||| ||| || || ||||||| ||||
Sbjct 1101 AACAAGTTTGAAGAAAGCAACTTTCTCCACAAAACCCATCGAACCGGTAAAGCTC-AAAG 1159
Query 1417 GTTGGAAAA-GAGACGTGAGATGCTCAACGAGTTGGCTAGTGTGCTCTGGGATTCATATT 1475
|| |||| |||||||||||| |||||||||||||||||| || | ||| |||| ||
Sbjct 1160 TTTTTAAAAAGAGACGTGAGATCCTCAACGAGTTGGCTAGTTTGGGCAGGGCTTCAAATC 1219
Query 1476 CATGTCACCTTGTGTTCGAATCTACTTAA 1504
|| || | ||||||| ||||||| ||||
Sbjct 1220 CAAGTGATTTTGTGTTTGAATCTATTTAA 1248
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79517663280
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5