BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485282
Length=2136
Score E
Sequences producing significant alignments: (Bits) Value
AT3G49240.1 | Symbols: emb1796 | Pentatricopeptide repeat (PPR)... 3221 0.0
> AT3G49240.1 | Symbols: emb1796 | Pentatricopeptide repeat (PPR)
superfamily protein | chr3:18255979-18258100 FORWARD LENGTH=2122
Length=2122
Score = 3221 bits (1744), Expect = 0.0
Identities = 1994/2114 (94%), Gaps = 20/2114 (1%)
Strand=Plus/Plus
Query 27 CTCCTAAAACCCTAACAAGAACCCTTACCTCTCTCATTTCCTCTCAAAGGAATCATTTTT 86
||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 19 CTCCTAAAACCCTAACAAGAACCCTTATCTCTCTCATTTCCTCTGAAAGGAATCATTTTT 78
Query 87 CCACTGAGAAAATCTCAAACATTTCCACCATGTCGATCTCTAAAGCCGCCTTTTTCAACC 146
||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||
Sbjct 79 CCACTCAGAAAATCTCAAACATTTCAACCATGTCGATTTCTAAAGCCGCCTTTTTAAACC 138
Query 147 ACCTTCAAACACTAGCAAGATCCTACCGCCACCGTGTTCCGCCGCAGCCATTTCTCGCCG 206
|||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 139 ACCTTCAAACACTATCAAGATCCTACCGCCACCGTGTTCTGCCGCAGCCATTTCTCGCCG 198
Query 207 TCCGATACATGTCATTCGCGACTCAGGAAGAAGCCGCTGCTGAACGTCGCCGTCGTAAGC 266
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 199 TCCGATACATGTCATTCGCGACTCAGGAAGAAGCCGCCGCTGAACGTCGCCGTCGTAAGC 258
Query 267 GTCGTCTTCGTATGGAGCCACCGGTTAATTCATTCAACAGATCTCAGCAACAACAGAATC 326
||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 259 GTCGTCTTCGTATGGAGCCACCGGTTAATTCATTCAACAGATCTCAG---CAAC---A-- 310
Query 327 AGCAATCTCAAATCCATAGACCAATTCAGAACCCTAATATCCCCAAGTTGCCTGAATCTG 386
| ||||||||||||| | |||||||||| |||||||||||||| || || ||||||||||
Sbjct 311 A-CAATCTCAAATCCCTCGACCAATTCAAAACCCTAATATCCCGAAATTACCTGAATCTG 369
Query 387 TGGCTTCCCTCGTTGGGAAACGTCTCGATCTCCATAATCATATCTTGAAATTGATCCGAG 446
| || | ||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 370 TCTCTGCTCTCGTTGGGAAACGTCTCGATCTTCATAATCATATCCTGAAATTGATCCGAG 429
Query 447 AGAATGATTTGGAAGAAGCTGCTTTGTACACTCGTCACTCTGTGTATTCGAATTGCCGGC 506
|||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 430 AGAATGATTTAGAAGAAGCTGCTCTGTACACTCGTCACTCTGTGTATTCGAATTGCCGTC 489
Query 507 CGACGATTTTCACGGTGAACGCTGTTTTAGCGGCGCAGCTTCGACAGGCGAAGTATGGAG 566
| ||||||||||| ||||| ||||||||||||||||||||||||| || ||||||||||
Sbjct 490 CCACGATTTTCACTGTGAATACTGTTTTAGCGGCGCAGCTTCGACAAGCTAAGTATGGAG 549
Query 567 CGCTTCTGCAATTGCATGGTTTCATTAACCAAGCTGGTATTGCTCCTAATATCATCACCT 626
||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||| |
Sbjct 550 CGCTTCTGCAATTGCATGGATTCATTAATCAAGCTGGTATTGCACCTAATATCATCACAT 609
Query 627 ACAATTTGATTTTCCAGGCTTATCTTGATGTTAGGAAACCTGAAATTGCGTTGGAGCATT 686
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 610 ACAATTTGATATTCCAGGCTTATCTTGATGTAAGGAAACCTGAAATTGCGTTGGAGCATT 669
Query 687 ACAAGTTGTTTATAGATAATGCGCCGTTGAATCCTTCTCTTGCTACTTATAGGATTTTAG 746
|||||||||||||||||||||| || |||||||||||| ||||||||| |||||||||||
Sbjct 670 ACAAGTTGTTTATAGATAATGCTCCATTGAATCCTTCTATTGCTACTTTTAGGATTTTAG 729
Query 747 TTAAAGGTTTAGTTAGTAATGATAATCTTGAGAAAGCAATGGAGATTAAGGAGGATATGG 806
|||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 730 TTAAGGGTTTAGTTAGTAATGACAATCTTGAGAAAGCAATGGAGATTAAAGAGGATATGG 789
Query 807 GTGTTAGAGGTTTGGTGGTGGATCCTGTTGTTTATAGCTATCTAATGATGGGGTGTGTGA 866
||||| |||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 790 CTGTTAAAGGTTTTGTGGTGGATCCTGTTGTTTATAGTTATCTAATGATGGGGTGTGTGA 849
Query 867 AGAATTCTGATGCTGATGGTGTGTTAAAGCTTTATGAGGAGTTGAAA-GAGAAGCTTGGT 925
||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||
Sbjct 850 AGAATTCTGATGCTGATGGTGTGTTAAAGCTTTATCAGGAGTT-AAAGGAGAAGCTTGGT 908
Query 926 GGATTTGTTGATGATGGTGTGGTTTATGGGCAATTGATGAAGGGGTATTTCATGAAGGAA 985
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 909 GGGTTTGTTGATGATGGTGTGGTTTATGGGCAATTGATGAAGGGGTATTTCATGAAGGAG 968
Query 986 ATGGAGAAAGAGGCTATGGAGTGTTATGAGGAAGCTATTGGAGAGAATTCAAAGGTTAAG 1045
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 969 ATGGAGAAAGAGGCTATGGAGTGTTATGAGGAAGCTGTTGGAGAGAATTCAAAGGTTAGG 1028
Query 1046 ATGAGTGCTATGGCTTATAATTATGTGCTGGAGGCTTTGAGTGAGAATGGGAAGTTTGAT 1105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1029 ATGAGTGCTATGGCTTATAATTATGTGCTGGAGGCTTTGAGTGAGAATGGGAAGTTTGAT 1088
Query 1106 GAGGCTTTGAAGTTGTTTGATGCCGTGAAAAAGGAACATAATCCACCGAGGCGTTTGGCT 1165
||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 1089 GAGGCTTTGAAGTTGTTTGATGCGGTGAAAAAGGAACATAATCCACCGAGGCATTTGGCT 1148
Query 1166 GTAAATTTGGGAACTTTTAATGTGATGGTTGATGGGTATTGTGCACAAGGGAGGTTTGAG 1225
|||||||||||||||||||||||||||||| ||||||| ||||| ||| | |||||||
Sbjct 1149 GTAAATTTGGGAACTTTTAATGTGATGGTTAATGGGTACTGTGCTGGAGGAAAGTTTGAG 1208
Query 1226 GAAGCTATGGAGGTTTTCAGGCAAATGGGTGATTTCAGGTGTAGTCCCGATACTTTATCT 1285
||||||||||||||||| ||||||||||||||||| | ||||||||| |||||||||||
Sbjct 1209 GAAGCTATGGAGGTTTTTAGGCAAATGGGTGATTTTAAGTGTAGTCCTGATACTTTATCG 1268
Query 1286 TTCAACAATCTAATGAATCAGCTGTGCGACAATG-GATTGTTGGCTGAGGCTGAGAAGCT 1344
||||||||||| |||||||||||||| ||||| | | |||||||||||||||||||||||
Sbjct 1269 TTCAACAATCTGATGAATCAGCTGTGTGACAACGAG-TTGTTGGCTGAGGCTGAGAAGCT 1327
Query 1345 TTACGGTGAAATGGAAGAGAAAAAGGTGAAGCCTGATGAGTACACATATGGGTTGTTAAT 1404
||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 1328 TTATGGTGAAATGGAAGAGAAAAATGTGAAGCCTGATGAGTACACATATGGTTTGTTAAT 1387
Query 1405 GGATACTTGTTTCAAGGAAGGTAAGATAGATGAAGGCGCTGCGTATTACAAAACAATGGT 1464
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1388 GGATACTTGTTTCAAGGAAGGTAAGATAGATGAAGGAGCTGCGTATTACAAAACAATGGT 1447
Query 1465 TGAGTCTAATCTAAGACCAAACTTGGCGGTGTATAACCGATTGCAAGATCAGTTAATTAA 1524
||||||||||||||||||||| ||||| ||||||||||| |||||||||||||| || ||
Sbjct 1448 TGAGTCTAATCTAAGACCAAATTTGGCTGTGTATAACCGTTTGCAAGATCAGTTGATCAA 1507
Query 1525 AGCTGGGAAACTCGACGATGCAAAATCCTTCTTCGATATGATGGTGAGCAAACTCAAGAT 1584
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1508 AGCTGGGAAACTCGACGATGCAAAATCTTTCTTCGATATGATGGTGAGCAAACTCAAGAT 1567
Query 1585 GGACGATGAGGCTTACAAATTCATCATGAGGGCGTTAAATGAAGCTGGTAGACTCGACGA 1644
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1568 GGACGATGAGGCTTACAAATTCATCATGAGGGCGTTAAGTGAAGCTGGTAGACTCGACGA 1627
Query 1645 GATGCTCAAGATTGTGGATGAGATGCTGGATGATGACACGGTCAGAGTGAGTGAGGAACT 1704
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1628 GATGCTCAAGATTGTGGATGAGATGCTGGATGATGACACGGTAAGAGTGAGTGAGGAACT 1687
Query 1705 GCAAGAGTTTGTgaaagaagaactgagaaaaggaggaagagagggagatctggagaagct 1764
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1688 GCAAGAGTTTGTGAAAGAAGAACTGAGGAAAGGAGGAAGAGAGGGAGATCTGGAGAAACT 1747
Query 1765 aatggaagagaaagagagattgaaagcagaggcaaaggcgaaagagttagcagatgcgga 1824
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1748 AATGGAAGAGAAAGAGAGATTGAAAGCAGAGGCAAAGGCGAAAGAGTTAGCAGATGCAGA 1807
Query 1825 agagaagaagaagag-TCAAAGTATTAACATAGCTGCATTAATTACTCCAAAAGTAGTGG 1883
||||||||||||| | |||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 1808 AGAGAAGAAGAAG-GCTCAAAGTATTAACATAGCTGCATTAATTCCTCCAAAAGCAGTGG 1866
Query 1884 AAGAAAAGAAAGAGACGGCAAAACTGCTTTGGGAAAACGAAGCTGGTGGTGCCGAAGAAG 1943
||||||||||||| || |||||||||||||||||||||||||||||||||| |||||||
Sbjct 1867 AAGAAAAGAAAGAAACCGCAAAACTGCTTTGGGAAAACGAAGCTGGTGGTGTTGAAGAAG 1926
Query 1944 CCGATGTGGTGGAGATGACTCAAGGAGTAGAAGCAGGTGGATCCAACGGTCAGGATCCGC 2003
||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||| |
Sbjct 1927 CCGATGTGGTGGAGATGGCTAAAGGAGTAGAAGCAGGTGGATCCAATGGTCAGGATCCAC 1986
Query 2004 CGTCCTGCTGATCGTATTTTTTAC-TTGAATTTATTAGACTCTCTAGTTATCTTCCTATA 2062
||||||||||||| |||||||| | ||||||| |||||||||| |||||||||| | ||
Sbjct 1987 CGTCCTGCTGATCTTATTTTTTTCCTTGAATTCATTAGACTCT--AGTTATCTTC-T-TA 2042
Query 2063 TTATTCAAGTTTTATGTAATTAGGGATTTGGTTGGGACAATAAGCTATGATTAATCTTTT 2122
| |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2043 TCATTCAACTTTTATGTAATTAGGGATTTGTTTGGGACAATAAGCTATGATTAATCTTTT 2102
Query 2123 GCTATAATGCAGGT 2136
||||||||||||||
Sbjct 2103 GCTATAATGCAGGT 2116
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 105923149950
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5