BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485283
Length=1522
Score E
Sequences producing significant alignments: (Bits) Value
AT3G49250.1 | Symbols: DMS3, IDN1 | defective in meristem silen... 2139 0.0
> AT3G49250.1 | Symbols: DMS3, IDN1 | defective in meristem silencing
3 | chr3:18258261-18260998 REVERSE LENGTH=1810
Length=1810
Score = 2139 bits (1158), Expect = 0.0
Identities = 1313/1387 (95%), Gaps = 13/1387 (1%)
Strand=Plus/Plus
Query 1 GATTCTCCGGTGATAACATTGAAGCTGAGGAGCAATGTATCCGAATGGTCAACAGATTTC 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 162 GATTCTCCGGTGATAACATTGAAGCTGAGGAGCAATGTATCCGACTGGTCAACAGATTTC 221
Query 61 GTTTCAGACCACTCCTTTGAATGTTCAAGATCCAACAACGATGATGAATTTGGGTCAATC 120
||||||||||||||| |||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 222 GTTTCAGACCACTCCGTTGAATGTTCAAGATCCAACAAGGATGATGAATTTGGATCAATC 281
Query 121 TTCACCAGTTCCAAGAGATGTAACTCAGAATGGAGGAGTAGGAGGAGGCATTGCTCACGC 180
|||||||||| ||||| ||| ||||| | || | | ||||||||||||||||||||
Sbjct 282 TTCACCAGTTGCAAGAAATGAAACTC---A--GA--A-T-GGAGGAGGCATTGCTCACGC 332
Query 181 TGAGTTTGCTATGTTCAATTCCAAGAGGCTTCAATCTGATCTTGAAGCTATGGGTAACAA 240
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 333 TGAGTTTGCTATGTTCAATTCCAAGAGGCTTGAATCTGATCTTGAAGCTATGGGTAACAA 392
Query 241 ACTCAAACAGCATGAGGATAATCTCAAGTTTCTCAAGTCACAGAAAAACAAATTGGATGA 300
| ||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 393 AATCAAACAGCATGAGGATAATCTCAAGTTTCTCAAGTCTCAGAAAAACAAAATGGATGA 452
Query 301 AGCAATCGTCGACTTGCAAGTTCATATGAGCAAGCTTCATTCGTCTCCTACTCGTAGAAG 360
||| |||||||||||||||||||||||||| |||||| | ||||||||||||| ||||||
Sbjct 453 AGCTATCGTCGACTTGCAAGTTCATATGAGTAAGCTTAACTCGTCTCCTACTCCTAGAAG 512
Query 361 TGAAAATTGTGATAACAATCTTCAGGGTGAAGATATTAATGAACAGATCCTTCGCCACGA 420
|||||| | |||||||| |||||||||||||||||| |||| ||||||||||||||||||
Sbjct 513 TGAAAACTCTGATAACAGTCTTCAGGGTGAAGATATCAATGCACAGATCCTTCGCCACGA 572
Query 421 AAACTCAGCTGCTGGAGTTTTAGGTCTGGTTGAGACT-TGTCATGGCGCGCAGGCTTCTC 479
|||||||||||||||||||||| |||||||||||||| | |||||| || || |||||||
Sbjct 573 AAACTCAGCTGCTGGAGTTTTAAGTCTGGTTGAGACTCT-TCATGGTGCTCAAGCTTCTC 631
Query 480 AGTTGATGTTGACAAAAGGTGTTGTTGGTGTTGTAGCGAAACTTGGGAAGGTCAATGATG 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 632 AGTTGATGTTGACAAAAGGTGTTGTTGGTGTTGTAGCGAAACTTGGGAAGGTCAATGATG 691
Query 540 AAAATCTCAGCCAGATTTTATCGAATTATTTGGGGACTCGCTCAATGTTGGCAGTTGTAT 599
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 692 AAAATCTCAGCCAGATTTTGTCGAATTATTTGGGGACTCGCTCAATGTTGGCAGTTGTAT 751
Query 600 GCAGGAATTATGAAAGTGTTACGGCTTTAGAGGCTTATGATAACCAAGGCAACATTGATA 659
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 752 GCAGGAATTATGAAAGTGTTACGGCTTTAGAGGCTTATGATAACCATGGCAACATTGATA 811
Query 660 GAAATGCTGGCCTTCATGGCCTTGGCGCTTCGATTGGCAGA-ACCATTGGAGGCAATTTT 718
|||||||||||||||| |||||||| |||||||||| ||| | ||||||| || ||||
Sbjct 812 TAAATGCTGGCCTTCATTGCCTTGGCTCTTCGATTGGAAGAGAG-ATTGGAGACAGTTTT 870
Query 719 GATGCCATCTGCCTTGAAAACCTGAGGCCGTACGTTGGTCAGCACATAGCTGATGATCTG 778
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 871 GATGCCATCTGCCTTGAAAACCTGAGGCCGTATGTTGGTCAGCACATAGCTGATGATCTG 930
Query 779 CAAAGAAGGCTTGATCTTCTGAAACCAAAATTGCCTAATGGTGAGTGTCCTCCCGGGTTT 838
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 931 CAAAGAAGGCTTGATCTTCTGAAACCAAAATTACCTAATGGTGAGTGTCCTCCCGGGTTT 990
Query 839 CTTGGATTTGCAGTGAATATGATACAAATCGATCCGGCTTACTTGCTCTGTGTCACATCA 898
|| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 991 CTCGGATTTGCAGTGAATATGATACAGATCGATCCAGCTTACTTGCTCTGTGTCACATCA 1050
Query 899 TATGGACATGGTCTTCGTGAGACCTTGTTCTACAGTCTATTCTCTCGCCTTCAAGTTTAC 958
|||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1051 TATGGATATGGTCTTCGTGAGACCTTGTTCTACAATCTATTCTCTCGCCTTCAAGTTTAC 1110
Query 959 AAAACAAGGGCCGATATGATTAGTGCCCTCCCATGCATAAGTGATGGTGCAGTATCTTTG 1018
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1111 AAAACAAGGGCCGATATGATTAGTGCCCTCCCATGCATAAGTGATGGTGCGGTATCTTTG 1170
Query 1019 GATGGAGGAATCATCAGGACACCGGGGATCTTCAATCTTGGAAACCGTGATGAGGTGAAT 1078
||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 1171 GATGGAGGAATCATCAGGAAAACGGGGATCTTCAATCTTGGAAACCGTGATGAGGTGAAC 1230
Query 1079 GTGAGATTTGCAAAGCCAACTGCTTCACGAACGATGGACAACTATAGTGAAGCGGAGAGG 1138
|||||||||||||||||||||||||| || |||||||||||||||||||| ||||||| |
Sbjct 1231 GTGAGATTTGCAAAGCCAACTGCTTCTCGCACGATGGACAACTATAGTGAGGCGGAGAAG 1290
Query 1139 AAAATGAAAGAGCTGAAATGGAAGAAGGAGAAAACGCTGGAGGACATTAAGCGAGAGCAA 1198
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1291 AAAATGAAAGAGCTGAAATGGAAAAAGGAGAAAACGCTGGAGGACATTAAGCGGGAGCAA 1350
Query 1199 GTGCTTCGTGAGCATGCTGTCTTCAACTTTGGCAAGAAAAAAGAAGAGTTTGTTCGATGC 1258
||||| ||||||||||| |||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1351 GTGCTCCGTGAGCATGCCGTCTTCAACTTTGGCAAGAAGAAAGAAGAATTTGTTCGATGC 1410
Query 1259 TTGGCTCAGAGTTCATGCACTAATCAGCCAATGAACACACCCAGATGAAAAGAGAGCAAG 1318
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 1411 TTGGCTCAGAGTTCATGCACTAATCAGCCAATGAACACACCCAGATGAAAAAAAAGCAAG 1470
Query 1319 CAAAGAAGCACGGAGCTCGGAGTTACAGTGACCCTTGCTTCTAAAGGAATCCTATTTTGA 1378
|||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1471 CAAAGAAGCATAGAGCTCGGAGTTACAGTGACCCTTGCTTCTATAGGAAGCCTATTTTGA 1530
Query 1379 CTATAAG 1385
|||||||
Sbjct 1531 CTATAAG 1537
Score = 121 bits (65), Expect = 3e-26
Identities = 117/138 (85%), Gaps = 20/138 (14%)
Strand=Plus/Plus
Query 1369 CCTATTTTGACTATAAGAACTTGTTTCCAGCTTAGTTTTTGATAGATTGCTTCCAT-G-A 1426
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |
Sbjct 1545 CCTATTTTGACTATAAGAACTTGTTTCCAGCTAAGTTTTTGATAGATTGCTTCCATGGAA 1604
Query 1427 T--A-C---T-AGAT-T--T--A----AATAAATTTCCTTGAAGGGTAGTAGATCGGTTA 1470
| | | | |||| | | | |||||||||||||||||||||||||||||||||
Sbjct 1605 TGCATCTTATCAGATATACTAGATTTTAATAAATTTCCTTGAAGGGTAGTAGATCGGTTA 1664
Query 1471 GTTTTGGTT-T-CTGTTT 1486
||||||||| | ||||||
Sbjct 1665 GTTTTGGTTATGCTGTTT 1682
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75100015320
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5