BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg485283 Length=1522 Score E Sequences producing significant alignments: (Bits) Value AT3G49250.1 | Symbols: DMS3, IDN1 | defective in meristem silen... 2139 0.0 > AT3G49250.1 | Symbols: DMS3, IDN1 | defective in meristem silencing 3 | chr3:18258261-18260998 REVERSE LENGTH=1810 Length=1810 Score = 2139 bits (1158), Expect = 0.0 Identities = 1313/1387 (95%), Gaps = 13/1387 (1%) Strand=Plus/Plus Query 1 GATTCTCCGGTGATAACATTGAAGCTGAGGAGCAATGTATCCGAATGGTCAACAGATTTC 60 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 162 GATTCTCCGGTGATAACATTGAAGCTGAGGAGCAATGTATCCGACTGGTCAACAGATTTC 221 Query 61 GTTTCAGACCACTCCTTTGAATGTTCAAGATCCAACAACGATGATGAATTTGGGTCAATC 120 ||||||||||||||| |||||||||||||||||||||| |||||||||||||| |||||| Sbjct 222 GTTTCAGACCACTCCGTTGAATGTTCAAGATCCAACAAGGATGATGAATTTGGATCAATC 281 Query 121 TTCACCAGTTCCAAGAGATGTAACTCAGAATGGAGGAGTAGGAGGAGGCATTGCTCACGC 180 |||||||||| ||||| ||| ||||| | || | | |||||||||||||||||||| Sbjct 282 TTCACCAGTTGCAAGAAATGAAACTC---A--GA--A-T-GGAGGAGGCATTGCTCACGC 332 Query 181 TGAGTTTGCTATGTTCAATTCCAAGAGGCTTCAATCTGATCTTGAAGCTATGGGTAACAA 240 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 333 TGAGTTTGCTATGTTCAATTCCAAGAGGCTTGAATCTGATCTTGAAGCTATGGGTAACAA 392 Query 241 ACTCAAACAGCATGAGGATAATCTCAAGTTTCTCAAGTCACAGAAAAACAAATTGGATGA 300 | ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 393 AATCAAACAGCATGAGGATAATCTCAAGTTTCTCAAGTCTCAGAAAAACAAAATGGATGA 452 Query 301 AGCAATCGTCGACTTGCAAGTTCATATGAGCAAGCTTCATTCGTCTCCTACTCGTAGAAG 360 ||| |||||||||||||||||||||||||| |||||| | ||||||||||||| |||||| Sbjct 453 AGCTATCGTCGACTTGCAAGTTCATATGAGTAAGCTTAACTCGTCTCCTACTCCTAGAAG 512 Query 361 TGAAAATTGTGATAACAATCTTCAGGGTGAAGATATTAATGAACAGATCCTTCGCCACGA 420 |||||| | |||||||| |||||||||||||||||| |||| |||||||||||||||||| Sbjct 513 TGAAAACTCTGATAACAGTCTTCAGGGTGAAGATATCAATGCACAGATCCTTCGCCACGA 572 Query 421 AAACTCAGCTGCTGGAGTTTTAGGTCTGGTTGAGACT-TGTCATGGCGCGCAGGCTTCTC 479 |||||||||||||||||||||| |||||||||||||| | |||||| || || ||||||| Sbjct 573 AAACTCAGCTGCTGGAGTTTTAAGTCTGGTTGAGACTCT-TCATGGTGCTCAAGCTTCTC 631 Query 480 AGTTGATGTTGACAAAAGGTGTTGTTGGTGTTGTAGCGAAACTTGGGAAGGTCAATGATG 539 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 632 AGTTGATGTTGACAAAAGGTGTTGTTGGTGTTGTAGCGAAACTTGGGAAGGTCAATGATG 691 Query 540 AAAATCTCAGCCAGATTTTATCGAATTATTTGGGGACTCGCTCAATGTTGGCAGTTGTAT 599 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 692 AAAATCTCAGCCAGATTTTGTCGAATTATTTGGGGACTCGCTCAATGTTGGCAGTTGTAT 751 Query 600 GCAGGAATTATGAAAGTGTTACGGCTTTAGAGGCTTATGATAACCAAGGCAACATTGATA 659 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 752 GCAGGAATTATGAAAGTGTTACGGCTTTAGAGGCTTATGATAACCATGGCAACATTGATA 811 Query 660 GAAATGCTGGCCTTCATGGCCTTGGCGCTTCGATTGGCAGA-ACCATTGGAGGCAATTTT 718 |||||||||||||||| |||||||| |||||||||| ||| | ||||||| || |||| Sbjct 812 TAAATGCTGGCCTTCATTGCCTTGGCTCTTCGATTGGAAGAGAG-ATTGGAGACAGTTTT 870 Query 719 GATGCCATCTGCCTTGAAAACCTGAGGCCGTACGTTGGTCAGCACATAGCTGATGATCTG 778 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 871 GATGCCATCTGCCTTGAAAACCTGAGGCCGTATGTTGGTCAGCACATAGCTGATGATCTG 930 Query 779 CAAAGAAGGCTTGATCTTCTGAAACCAAAATTGCCTAATGGTGAGTGTCCTCCCGGGTTT 838 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 931 CAAAGAAGGCTTGATCTTCTGAAACCAAAATTACCTAATGGTGAGTGTCCTCCCGGGTTT 990 Query 839 CTTGGATTTGCAGTGAATATGATACAAATCGATCCGGCTTACTTGCTCTGTGTCACATCA 898 || ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 991 CTCGGATTTGCAGTGAATATGATACAGATCGATCCAGCTTACTTGCTCTGTGTCACATCA 1050 Query 899 TATGGACATGGTCTTCGTGAGACCTTGTTCTACAGTCTATTCTCTCGCCTTCAAGTTTAC 958 |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1051 TATGGATATGGTCTTCGTGAGACCTTGTTCTACAATCTATTCTCTCGCCTTCAAGTTTAC 1110 Query 959 AAAACAAGGGCCGATATGATTAGTGCCCTCCCATGCATAAGTGATGGTGCAGTATCTTTG 1018 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1111 AAAACAAGGGCCGATATGATTAGTGCCCTCCCATGCATAAGTGATGGTGCGGTATCTTTG 1170 Query 1019 GATGGAGGAATCATCAGGACACCGGGGATCTTCAATCTTGGAAACCGTGATGAGGTGAAT 1078 ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| Sbjct 1171 GATGGAGGAATCATCAGGAAAACGGGGATCTTCAATCTTGGAAACCGTGATGAGGTGAAC 1230 Query 1079 GTGAGATTTGCAAAGCCAACTGCTTCACGAACGATGGACAACTATAGTGAAGCGGAGAGG 1138 |||||||||||||||||||||||||| || |||||||||||||||||||| ||||||| | Sbjct 1231 GTGAGATTTGCAAAGCCAACTGCTTCTCGCACGATGGACAACTATAGTGAGGCGGAGAAG 1290 Query 1139 AAAATGAAAGAGCTGAAATGGAAGAAGGAGAAAACGCTGGAGGACATTAAGCGAGAGCAA 1198 ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 1291 AAAATGAAAGAGCTGAAATGGAAAAAGGAGAAAACGCTGGAGGACATTAAGCGGGAGCAA 1350 Query 1199 GTGCTTCGTGAGCATGCTGTCTTCAACTTTGGCAAGAAAAAAGAAGAGTTTGTTCGATGC 1258 ||||| ||||||||||| |||||||||||||||||||| |||||||| |||||||||||| Sbjct 1351 GTGCTCCGTGAGCATGCCGTCTTCAACTTTGGCAAGAAGAAAGAAGAATTTGTTCGATGC 1410 Query 1259 TTGGCTCAGAGTTCATGCACTAATCAGCCAATGAACACACCCAGATGAAAAGAGAGCAAG 1318 ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| Sbjct 1411 TTGGCTCAGAGTTCATGCACTAATCAGCCAATGAACACACCCAGATGAAAAAAAAGCAAG 1470 Query 1319 CAAAGAAGCACGGAGCTCGGAGTTACAGTGACCCTTGCTTCTAAAGGAATCCTATTTTGA 1378 |||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct 1471 CAAAGAAGCATAGAGCTCGGAGTTACAGTGACCCTTGCTTCTATAGGAAGCCTATTTTGA 1530 Query 1379 CTATAAG 1385 ||||||| Sbjct 1531 CTATAAG 1537 Score = 121 bits (65), Expect = 3e-26 Identities = 117/138 (85%), Gaps = 20/138 (14%) Strand=Plus/Plus Query 1369 CCTATTTTGACTATAAGAACTTGTTTCCAGCTTAGTTTTTGATAGATTGCTTCCAT-G-A 1426 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | | Sbjct 1545 CCTATTTTGACTATAAGAACTTGTTTCCAGCTAAGTTTTTGATAGATTGCTTCCATGGAA 1604 Query 1427 T--A-C---T-AGAT-T--T--A----AATAAATTTCCTTGAAGGGTAGTAGATCGGTTA 1470 | | | | |||| | | | ||||||||||||||||||||||||||||||||| Sbjct 1605 TGCATCTTATCAGATATACTAGATTTTAATAAATTTCCTTGAAGGGTAGTAGATCGGTTA 1664 Query 1471 GTTTTGGTT-T-CTGTTT 1486 ||||||||| | |||||| Sbjct 1665 GTTTTGGTTATGCTGTTT 1682 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 75100015320 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5