BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485285
Length=1758
Score E
Sequences producing significant alignments: (Bits) Value
AT3G49260.3 | Symbols: iqd21 | IQ-domain 21 | chr3:18262399-182... 2610 0.0
> AT3G49260.3 | Symbols: iqd21 | IQ-domain 21 | chr3:18262399-18265979
FORWARD LENGTH=1740
Length=1740
Score = 2610 bits (1413), Expect = 0.0
Identities = 1622/1721 (94%), Gaps = 22/1721 (1%)
Strand=Plus/Plus
Query 1 GTGAGACATCctctccttctctaacttaagtctctctgtgacttctctctctcacacctc 60
||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct 32 GTGAGACATCCTCTCCTTCTC-AACTTAAGTCTCTCTGTGACTTCTCTCTCT--CACCTC 88
Query 61 ttcttct-tatctc--tctcattctctAGACTTCAAAAATCGCTTCTAATGGCTTGATCA 117
||||| | | |||| |||| ||||||| ||||||| ||||||||||||| | |||||||
Sbjct 89 TTCTTATCTCTCTCGTTCTCTTTCTCTAAACTTCAACAATCGCTTCTAATCGTTTGATCA 148
Query 118 CATTGCACAAACATGTAATAATAGAGCTTATGATCAAAGAATTTTGCCGGAAATATGGGG 177
|||||||||||||| || |||||||||||||||||||||| | |||||||||||||||||
Sbjct 149 CATTGCACAAACAT-TATTAATAGAGCTTATGATCAAAGAGTGTTGCCGGAAATATGGGG 207
Query 178 AAGAAAGGGAGTGGTGGATGGTTCTCGACGGTGAAGAAGAGAGTCTTCAAATCCTCTCCT 237
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 208 AAGAAAGGGAGTGGTGGATGGTTCTCGACGGTGAAGAAGAAAGTCTTCAAATCCTCTCCT 267
Query 238 AAAGACTCAAAGAGAGAGAACAACATTGGTAGTAATAACGCCGACATATGGCAGCAGCAA 297
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 268 AAAGACTCCAAGAGAGAGAACAACATTGGTAGTAATAACGCCGACATATGGCAGCAGCAG 327
Query 298 CACGATACGCAAGAAGTCGTGTCGTTTGAAAATTTTCCGGCGGAAAGTTCACCGGAGATC 357
|| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 328 CATGATACGCAAGAAGTCGTGTCGTTTGAACATTTTCCGGCGGAAAGTTCACCGGAGATC 387
Query 358 TCTCATGACGTTGAGAGCACAGCTTCTACTCCAGCAACCAATGTTGGAGACAGAAAACAC 417
|| |||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 388 TCCCATGACGTCGAGAGCACAGCATCTACTCCAGCAACTAATGTTGGAGACAGAAAACAC 447
Query 418 GCCATGGCTGTGGCTATAGCCACTGCAGCTGCTGCCGAAGCCGCGGTTGCAGCCGCACAA 477
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 448 GCTATGGCTGTAGCTATAGCCACTGCAGCTGCTGCCGAAGCCGCGGTTGCAGCCGCACAA 507
Query 478 GCCGCCGCTAAAGTTGTTCGGCTTGCCGGCTATAACCGCCAGACGGAGGAAGATAGCGCC 537
|| ||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 508 GCTGCCGCTAAAGTCGTTCGACTTGCCGGCTACAACCGCCAGACGGAGGAAGATAGCGCC 567
Query 538 GCCGTGCTCATCCAATCGCACTATAGGGGTTATTTGGCGAGGCGAGCACTTCGTGCCTTA 597
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 568 GCCGTGCTAATCCAATCGCACTATAGGGGTTATTTGGCGAGACGAGCACTTCGTGCCTTA 627
Query 598 AAAGGACTAGTTAGGCTACAAGCATTGGTCCGTGGCAACCACGTTCGAAAACAGGCACAA 657
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 628 AAAGGACTAGTTAGGCTACAAGCATTGGTCCGTGGCAACCACGTACGAAAACAGGCACAG 687
Query 658 ATGACTATGAAATGTATGCAAGCTTTGGTTCGTGTCCAAGGCCGAGTCAGAGCGAGAAGA 717
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 688 ATGACTATGAAATGTATGCAAGCATTGGTTCGTGTCCAAGGCCGAGTCAGAGCAAGAAGA 747
Query 718 CTACAAGTGGCTCATGACCGATTTAAGAAACAGTTTGAGGAAGAAGAGAAGCGGTCCGGG 777
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 748 CTCCAAGTGGCTCATGACCGGTTTAAGAAACAGTTTGAGGAAGAAGAGAAGCGGTCCGGG 807
Query 778 ATGGAAAAACTGAACAAGGT---GTTTGCGAATCTCAAAACCGAACGAGAGAAACCGAAG 834
|||||||||| ||||||||| |||||||||||||||||| ||||||||||| ||||||
Sbjct 808 ATGGAAAAACCGAACAAGGTAGGGTTTGCGAATCTCAAAACGGAACGAGAGAAGCCGAAG 867
Query 835 AAATTGCATGAAGTAAATCGAACCAGCCAGTACCAAACTCCGGGAAAGGAAAAAGAGAGG 894
||||| |||||||| ||||||||||| | ||||||||||| ||||||||||||||||||
Sbjct 868 AAATTACATGAAGTGAATCGAACCAGTCTGTACCAAACTCAAGGAAAGGAAAAAGAGAGG 927
Query 895 AGTGAAGGAATGATGAAAAGAGAGAGGGCTCTTGCTTATGCATACACTTACCAGCGCCAA 954
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 928 AGTGAAGGAATGATGAAAAGAGAGAGGGCTCTAGCTTATGCGTACACTTACCAGCGCCAA 987
Query 955 ATGCAACACACAAATGGTGAAGAAGGGATTGGGCTTTCTTCTAATGGGCCTGATAGAAAC 1014
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 988 ATGCAACACACAAATAGTGAAGAAGGGATTGGGCTTTCTTCTAATGGGCCTGATAGAAAC 1047
Query 1015 CAATGGGCTTGGAATTGGCTTGACCATTGGATGTCTTCTCAGCCATACACAGGCCGTCAA 1074
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 1048 CAATGGGCTTGGAATTGGCTTGACCATTGGATGTCTTCCCAGCCATACACTGGCCGTCAA 1107
Query 1075 ACCGGCCCGGCTCCCGGTCCCGGACAGTACAATCCTCCTCCGTATCCGCCTTTCCCGACA 1134
|| || |||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1108 ACTGGTCCGGGTCCCGGTCCCGGACAGTACAATCCTCCTCCGTATCCGCCTTTTCCGACA 1167
Query 1135 GCCGCAGCAGCCACCACATCTGATGATGTTTCGGAGAAGACGGTTGAAATGGACGTGACC 1194
|| || ||| ||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1168 GCTGCGGCAACCACCACATCTGATGATGTATCGGAGAAGACGGTGGAAATGGACGTGACC 1227
Query 1195 ACTCCGACTAGCCTCAAGGACAATATAATCGGGCTTATTGATCGAGAGTATATAGACTTA 1254
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1228 ACTCCGACTAGCCTCAAGGGCAATATAATCGGGCTTATTGATCGAGAGTATATAGACTTA 1287
Query 1255 GGATCATATAGACAAGGCCATAAGCAACGGAAAAGCCCAACCCATATACCAAGCTATATG 1314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1288 GGATCATATAGACAAGGCCATAAGCAACGGAAAAGCCCAACCCATATACCAAGCTATATG 1347
Query 1315 GCTCCAACCGCATCTGCAAAAGCTAAAGTTCGAGACCAAGGCACAACCGTCAAGCTACAA 1374
||||||||||||||||| || |||||||||||||| |||||| |||||||||| ||||||
Sbjct 1348 GCTCCAACCGCATCTGCTAAGGCTAAAGTTCGAGATCAAGGCCCAACCGTCAAACTACAA 1407
Query 1375 GGATCTTCTTTTATGCCGTACTGGAACTCCTCAACCAAAAACGGGTCGGTTAATGGATCA 1434
||| |||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 1408 GGAACTTCGTTTATGCCGTATTGGAACTCCTCGACCAAAAACGGGTCGGTTAATGGATCA 1467
Query 1435 GGTTGTGATTCATCAAGTTCAGGTGGAGCAATAACAACCGGTTACCCCGGTCCTAGGAGT 1494
||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 1468 GGTTGTGATTCGTCAAGTTCAGGTGGAGCAATAACAACTGGTTATCCCGGTCCTAGGAGT 1527
Query 1495 CCTAACCCGAAATCGGATATCCGACGTAAACCGGTTAGTCCTAGTCAAAGTCCTACCGGG 1554
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1528 CCGAACCCAAAATCGGATATCCGACGTAAACCGGTTAGTCCTAGTCAAAGTCCTACCGGG 1587
Query 1555 TTTGGGAAGAGAGGCTGGAGGCATGATCATTAGAAGAAA-TCATCT-TAAATCTTGAATA 1612
||||| ||||||||||||||||||||||||||||||||| | || | ||| |||||||||
Sbjct 1588 TTTGGAAAGAGAGGCTGGAGGCATGATCATTAGAAGAAAGT-ATATGTAA-TCTTGAATA 1645
Query 1613 AAAACTTACATGTGTGCGCTTGGTTGGTTAATTATCGTGTTTGAAATATATTTTCGTTGT 1672
|||||||||||||||| | |||||| ||||||| |||||||||||||||||| |||
Sbjct 1646 AAAACTTACATGTGTG-G-TTGGTT----AATTATCTTGTTTGAAATATATTTTCCCTGT 1699
Query 1673 TACATAATTGTATATGACATTAATAAT--AACATGTCATCT 1711
||||||||||||||||||||||||||| |||||||| |||
Sbjct 1700 TACATAATTGTATATGACATTAATAATTGAACATGTCTTCT 1740
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86947343940
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5