BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485287
Length=1324
Score E
Sequences producing significant alignments: (Bits) Value
AT3G49290.1 | Symbols: ABIL2 | ABL interactor-like protein 2 | ... 1670 0.0
> AT3G49290.1 | Symbols: ABIL2 | ABL interactor-like protein 2
| chr3:18272425-18275341 FORWARD LENGTH=1505
Length=1505
Score = 1670 bits (904), Expect = 0.0
Identities = 992/1035 (96%), Gaps = 3/1035 (0%)
Strand=Plus/Plus
Query 292 CTACAATGCCTGCGTCACATGATGCATCAAATTACGATGAGGTTTCTATGCAACAAAGCA 351
|||||||||||||||||||||| || |||||||||||||||||||||||||| ||||| |
Sbjct 442 CTACAATGCCTGCGTCACATGAAGCTTCAAATTACGATGAGGTTTCTATGCAGCAAAGTA 501
Query 352 TGCTCTTCTCTGATAGTCTTAAGGACTTGAAGAATTTGCGTGCGCAGTTGTATTCGGCAG 411
|||||||||||||| ||||| |||||||||||||| |||| |||||||||||||| ||||
Sbjct 502 TGCTCTTCTCTGATGGTCTTCAGGACTTGAAGAATCTGCGAGCGCAGTTGTATTCAGCAG 561
Query 412 CTGAGTATTTCGAACTATCTTACACTACCGACGATAAAAAGCAGATAGTTGTAGAGACAC 471
| ||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||
Sbjct 562 CCGAGTATTTCGAACTATCTTACACAACCGATGATAAAAAGCAGATTGTTGTAGAGACAC 621
Query 472 TGAAAGACTACGCTGTGAAGGCTTTGGTGAATACAGTTGACCATTTAGGCTCTGTTACAT 531
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 622 TGAAAGACTACGCTGTGAAGGCTCTGGTGAATACAGTTGACCATTTAGGCTCTGTTACAT 681
Query 532 ATAAAGTGAATGACTTTATCGATGAAAAAGTCGATGAAGTATCAGAGACCGAACTACGAG 591
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 682 ATAAAGTGAATGACTTTATCGATGAAAAAGTCGATGAAGTATCAGAGACCGAGCTGCGAG 741
Query 592 TATCTTGCATTGAACAGAGGCTAAGGATGTGCCAAGAGTATATGGATCATGAAGGGCGTT 651
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 742 TATCTTGCATCGAACAGAGGCTAAGAATGTGCCAAGAGTATATGGATCATGAAGGGCGTT 801
Query 652 CACAGCAATCACTTGTTATCGACACTCCAAAGTTCCATAAGCGATACATCTTACCCGCTG 711
||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
Sbjct 802 CACAGCAATCACTTGTTATTGACACTCCAAAGTTCCATAAACGATACATCTTACCCGCGG 861
Query 712 GTGAAATTATGACTGCTACCAATCTTGAAAAGCTTAAGTACTTTGGAAGCAGTTTAGAGG 771
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 862 GTGAAATTATGACTGCTACAAATCTTGAAAAGCTTAAGTACTTTGGAAGCAGTTTAGAGG 921
Query 772 ATGCAGATGATTGGAACCAATTCCGAAATGCTGTTCGTGCTACAATCCGGGAAACACCTC 831
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 922 ATGCAGATGATTGGAACCAATTCCGAAATGCTGTTCGTGCTACAATCCGGGAAACGCCTC 981
Query 832 CACCACCTGTTAGAAAATCAACATCTCAGACTCCATCTCCACGGCAACCACCTCAGCGAT 891
|||||||||||||||||||||||||||||| | |||||||||||||||||||||| ||||
Sbjct 982 CACCACCTGTTAGAAAATCAACATCTCAGAGTTCATCTCCACGGCAACCACCTCAACGAT 1041
Query 892 CAGCAACCTTTTCGTTTACCTCCACCATTCCAAAGAAAGAACAAGATAAGAGATCAGTTT 951
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1042 CAGCAACCTTTTCGTTTACCTCTACCATTCCAAAGAAAGAACAAGATAAGAGATCAGTTT 1101
Query 952 CACCGCATCGGTTTCCACTACTAAGATCAGGATCAGTCGCTACCCGGAAGTCAGCATCAA 1011
|||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 1102 CACCGCATCGGTTTCCACTACTAAGATCTGGATCAGTCGCTACCAGGAAGTCAGCATCAA 1161
Query 1012 TCAGCCGACCAACGACACCTAGCAAGAGCAGATCTATAACTCCTATACGGTATCCATCAG 1071
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1162 TCAGCCGACCAACGACACCAAGCAAGAGCAGATCTATAACTCCTATACGGTATCCATCAG 1221
Query 1072 AACCAAGAAGATCAGCTTCGGTCCGAGTCGCATTCGAGAAAGAAAACCAGAAGGAAACAG 1131
||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1222 AACCAAGAAGATCGGCTTCGGTCCGAGTCGCATTCGAGAAAGATAACCAGAAAGAAACAG 1281
Query 1132 AGCAGCAACAACCGAGCAAGAGCAAACGATTGCTCAAGGCTTTGCTTAGTCGACGCAAAA 1191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1282 AGCAGCAACAACCGAGCAAGAGCAAACGATTGCTCAAGGCTTTGCTTAGTCGACGCAAAA 1341
Query 1192 CCAAGAAAGACGACACTCTCTACACTTTCTTGGACGAATACTGAAAATGCCAATTCCGGT 1251
|||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 1342 CCAAGAAAGATGACACTCTCTACACTTTCTTGGACGAATACTGAAA-TGCCAATACCGGT 1400
Query 1252 TT--ATCTGTGGAAGCGCGTTACTAAACCGGAAAATTGTGGATTTCCTATTTTTTCTTTT 1309
|| || |||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1401 TTTTATTTGTGCAAGCGCTTTACTAAACCGGAAAATTGTGGATTTCCTATTTTTTCTTTT 1460
Query 1310 CTCTTTCTATATTAT 1324
| ||||||||||||
Sbjct 1461 ATTTTTCTATATTAT 1475
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65160307410
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5