BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg485289

Length=470
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G49300.1 | Symbols:  | proline-rich family protein | chr3:18...   560    4e-159
  AT3G49305.1 | Symbols:  | FUNCTIONS IN: molecular_function unkn...   294    4e-79 


> AT3G49300.1 | Symbols:  | proline-rich family protein | chr3:18276770-18277605 
REVERSE LENGTH=474
Length=474

 Score =  560 bits (303),  Expect = 4e-159
 Identities = 425/479 (89%), Gaps = 28/479 (6%)
 Strand=Plus/Plus

Query  1    AAAAATGCTTTCAAAGATGAAGCTGGCGGTTCTCATGTCGTTCTTGCTTCTGCTTCCATT  60
            |||||||||||||||||| |||| || ||||||||||||||||||||||||| |||||||
Sbjct  12   AAAAATGCTTTCAAAGATAAAGCCGGTGGTTCTCATGTCGTTCTTGCTTCTGTTTCCATT  71

Query  61   GTGTTCTTCGGGGTTAAGAGAGGGCCATGGAGTTGCTCACTCCGACCAATATTCCTTAAA  120
            ||||||||||||||| ||||| |||||||||||| ||||| |||||||| ||||||||||
Sbjct  72   GTGTTCTTCGGGGTTTAGAGAAGGCCATGGAGTTACTCACACCGACCAAAATTCCTTAAA  131

Query  121  CAAGGTTGACGAGAGTATTCCGACGATCATGGATTATCCGGAACCAGGCCCAGACCCAAA  180
            ||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||| ||
Sbjct  132  CAAGGTTGAAGAGAGTATTCCAACGATCATGGATTATCCGGAACCAGGTCCAGACCCGAA  191

Query  181  ACACGATCCAACAAAACCCGGTTATGGTTTTCCTCCGCCACCGCCGCCGCCGCT---ACC  237
            |||||||||||||||||||||||||||||||||||| |||||||| ||||| ||   |||
Sbjct  192  ACACGATCCAACAAAACCCGGTTATGGTTTTCCTCCCCCACCGCCACCGCCACTGTCACC  251

Query  238  ACCATC---ACCGAAGATGAACTAAGAATCAGGATGAAGCAAAAATATCTAATAAT-GT-  292
             ||| |   |||||||||||||||||||||| |||||||||||||||| ||||| | || 
Sbjct  252  GCCACCGCCACCGAAGATGAACTAAGAATCATGATGAAGCAAAAATATGTAATA-TCGTT  310

Query  293  AAATCATGCTCGCGAGAAGAACTAGTATTC-TGTGAAGCaaaaaaaaaaaaaaaaaaCTG  351
            |||||||||||| ||||||||||||||||| |||||||||||| |||||        || 
Sbjct  311  AAATCATGCTCGTGAGAAGAACTAGTATTCATGTGAAGCAAAAGAAAAA--------CTT  362

Query  352  AAATATGATGATTCTATGATATGTACTATCAAAGTAATCAATTAAATAATTAAAATGTTC  411
            |||||||||||||||||||||||||||||||||||||||||| ||||| | |||| |   
Sbjct  363  AAATATGATGATTCTATGATATGTACTATCAAAGTAATCAATCAAATA-T-AAAA-G---  416

Query  412  AATAAATTTGGTCAAAGAATTGGTCAATTGTTTGAATCATTGAtttttttCCTATTTAT  470
            | |||||||||  ||| |||||||||||||||||| || ||||||||||||||||||||
Sbjct  417  AGTAAATTTGG--AAA-AATTGGTCAATTGTTTGA-TCTTTGATTTTTTTCCTATTTAT  471


> AT3G49305.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown; 
INVOLVED IN: biological_process unknown; LOCATED IN: 
endomembrane system; BEST Arabidopsis thaliana protein match 
is: proline-rich family protein (TAIR:AT3G49300.1); Has 18 
Blast hits to 18 proteins in 3 species: Archae - 0; Bacteria 
- 0; Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other 
Eukaryotes - 0 (source: NCBI BLink). | chr3:18279750-18280408 
REVERSE LENGTH=260
Length=260

 Score =  294 bits (159),  Expect = 4e-79
 Identities = 202/223 (91%), Gaps = 2/223 (1%)
 Strand=Plus/Plus

Query  1    AAAAATGCTTTCAAAGATGAAGCTGGCGGTTCTCATGTCGTTCTTGCTTCTGCTTCCATT  60
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  20   AAAAATGCTTTCAAAGATGAAGCTGGTGGTTCTCATGTCGTTCTTGCTTCTGCTTCCATT  79

Query  61   GTGTTCTTCGGGGTTAAGAGAGGGCCATGGAGTTGCTCACTCCGACCAATATTCCTTAAA  120
            |||||| ||||| ||  ||||||||||||||||| ||||| || ||||||||||||||||
Sbjct  80   GTGTTCATCGGGATTTGGAGAGGGCCATGGAGTTACTCACACCAACCAATATTCCTTAAA  139

Query  121  CAAGGTTGACGAGAGTATTCCGACGATCATGGATTATCCGGAACCAGGCCC-AGACCCAA  179
            |||  |||| |||||||| || ||||||||||||||||| ||||||||||| | ||||||
Sbjct  140  CAATCTTGAGGAGAGTATCCCCACGATCATGGATTATCCAGAACCAGGCCCTA-ACCCAA  198

Query  180  AACACGATCCAACAAAACCCGGTTATGGTTTTCCTCCGCCACC  222
             ||| |||||||| |||||||||||||||  ||||||||||||
Sbjct  199  TACATGATCCAACGAAACCCGGTTATGGTCGTCCTCCGCCACC  241



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22354195415


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5