BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg485290

Length=531
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G49307.1 | Symbols:  | Expressed protein | chr3:18282205-182...   695    0.0  


> AT3G49307.1 | Symbols:  | Expressed protein | chr3:18282205-18283194 
REVERSE LENGTH=535
Length=535

 Score =  695 bits (376),  Expect = 0.0
 Identities = 490/541 (91%), Gaps = 23/541 (4%)
 Strand=Plus/Plus

Query  1    TTTTCTTTGTCAAAGACCCTTAGAAAACTTTTATTCATCATTTTGATAT-T-ATATTCAT  58
            |||||||||||||||| |||||||||||||||| |  |||||||||||| | ||||||| 
Sbjct  4    TTTTCTTTGTCAAAGATCCTTAGAAAACTTTTA-T--TCATTTTGATATATCATATTCAA  60

Query  59   TCCTCCAAAATTATAAACAAACAAACAATCTATTTCACT-TGTACCAATTTCCTTACGTG  117
            |||||||||||||| ||||||||| ||||| |||||| | ||| |||||||  |||||||
Sbjct  61   TCCTCCAAAATTATCAACAAACAAGCAATCCATTTCA-TATGT-CCAATTTAGTTACGTG  118

Query  118  TT-TTaaaaaaaaGTTTAACACGAATTCCATTTTA-TCAAACCCGATTCTCC----TATC  171
            ||  ||||||| |||||||| |||||||||||||| ||||||| ||||||||    ||||
Sbjct  119  TTACTAAAAAACAGTTTAACTCGAATTCCATTTTATTCAAACCTGATTCTCCTATATATC  178

Query  172  CACAAAGATGAAGTTGGTAGTTTTCTTCTCGTTCTTGCTCATGTTTTCATTGTGTTCTTC  231
            |||||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct  179  CACAAATATGAAGTTGGTGGTTCTCTTCTCGTTCTTGCTCATGTTTTCATTGTGTTCTTC  238

Query  232  AGGGTTGAAGGAGGACCTTGGTGTTACTCATATCGATCAATATTCCTCAGGCAAGGTTAA  291
            |||||| |||||||||||||||| || ||||||||||||||||||||||| |||| ||||
Sbjct  239  AGGGTTTAAGGAGGACCTTGGTGCTATTCATATCGATCAATATTCCTCAGACAAGATTAA  298

Query  292  AGAGAGTATTGAGAATCTGATGGACTATCCAGAACCTGGTCCCAACGAACCTGGACGACG  351
            | | ||||||||||||||||||||||||||      ||||||||||||||||||||||||
Sbjct  299  AAATAGTATTGAGAATCTGATGGACTATCC------TGGTCCCAACGAACCTGGACGACG  352

Query  352  TTATCCTGGACGTCCACATGGACCACAT-CCTCCGCATCTTAGGATGAAGAAGAAGAACC  410
            |||||||||||||||||||||||||||| || |||| || ||||||||||||||||||||
Sbjct  353  TTATCCTGGACGTCCACATGGACCACATGCC-CCGCGTCCTAGGATGAAGAAGAAGAACC  411

Query  411  CATAATGGAGAACAAAATGTGTAATATATATTGATGATGCAACGTTTTATAATATACTGG  470
            |||| ||||||||||||| |||||||||||||||||||||||| || ||||||||| |||
Sbjct  412  CATAGTGGAGAACAAAATATGTAATATATATTGATGATGCAACATTCTATAATATAGTGG  471

Query  471  AGAAGAAATATATGTAATATTGGTTCAATCCATCCTTATAATCATCAATAAATTCTAACT  530
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  472  AGAA-AAATATATGTAATATTGGTTCAATCCATCCTTATAATCATCAATAAATTCTAACT  530

Query  531  A  531
            |
Sbjct  531  A  531



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25418478382


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5