BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485298
Length=1666
Score E
Sequences producing significant alignments: (Bits) Value
AT3G49390.1 | Symbols: CID10 | CTC-interacting domain 10 | chr3... 2207 0.0
AT3G14450.1 | Symbols: CID9 | CTC-interacting domain 9 | chr3:4... 141 2e-32
> AT3G49390.1 | Symbols: CID10 | CTC-interacting domain 10 | chr3:18314562-18317998
REVERSE LENGTH=1658
Length=1658
Score = 2207 bits (1195), Expect = 0.0
Identities = 1525/1672 (91%), Gaps = 72/1672 (4%)
Strand=Plus/Plus
Query 1 CTTCTATTCTAATCATCTCCTTGAATTTTCCAAGTTTTCTCCTTTTGTC-T-T-T-ACTT 56
||||||||||||||||| ||||||||||||||||||||||||||||||| | | | || |
Sbjct 6 CTTCTATTCTAATCATCCCCTTGAATTTTCCAAGTTTTCTCCTTTTGTCTTCTCTAAC-T 64
Query 57 ATTTTCCCTT-GAATAAAAATCCAACTTTTCTTTGTTTCAGTCCTCTCTTGTGCTCTCAT 115
|||||||||| ||||||||||||| |||||||||||||||||||||||| || |||||
Sbjct 65 ATTTTCCCTTAAAATAAAAATCCAATTTTTCTTTGTTTCAGTCCTCTCTTCTG--CTCAT 122
Query 116 TGATCTTTTAATTAAGTTTGATTCTCTCCGTTTATGGCTTAACCATTTTCTCAAATTCTC 175
||||||||||||||| ||||||||||||||||||||| || | | | | ||| |
Sbjct 123 TGATCTTTTAATTAACTTTGATTCTCTCCGTTTATGGATT-A--A----C-C--ATT-T- 170
Query 176 TTTCTAAGTTTGGTTGTTTTTGATTCAGAAATCGAC-GAGTTGGTAAGTTGTTGTTGTCT 234
|| | | | | | | |||||||||| ||||| |||| ||||||||||||
Sbjct 171 GATC---G--AGATAACTCTCCA---AGAAATCGACTGAGTTCGTAACTTGTTGTTGTCT 222
Query 235 GATCGTTATAAAGATTCCACC-TTTTTGGTCCGATCATGGCTGTTGCTGAGAATGCTGGT 293
|||| || ||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 223 GATC-TTTTAAAGATTCAACCTTTTTTGGTCCGATCATGGCTGTTGCTGAGAATGCTGGT 281
Query 294 GTCAAAGTGGACTCTTCGTCTGGTCAGAATTTAG---ACAACAACA---CTGATTCAGCT 347
|||||||||||||| | |||||||||||||||| ||||||||| ||| |||||||
Sbjct 282 GTCAAAGTGGACTC-T--TCTGGTCAGAATTTAGACAACAACAACACTGCTGCTTCAGCT 338
Query 348 ACCGAGACG---AAGCCGCCATGTCCTGATGATGATCAGAGCCCTAAATCTGACTCATCG 404
||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 339 ACCGAGACGACAAAGCCGCCATGTCCTGATGATGATCAAAGCCCTAAATCTGACTCATCC 398
Query 405 AATCCTCCTACCATCGATTCGACTCCAGAAACTGACGATCGGATCAATGAGACTGCTCAA 464
| ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 399 ACTCCTCTTACCATCGATTCGACTCCTGAAACTGACGATCGGATCAATGAGACTGCTCAA 458
Query 465 GAGGGTCAGACTTTAAATGGGTTTAACAGAAATGGTGAGAGAGATAACAATGGAGAGATC 524
||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 459 AAGGTTCAGACTTTAAATGGGTTTAGTGGAAATGGTGAGAGAGATAACAATGGAGAGATC 518
Query 525 AAAGATTTGGCTGATGCTTTTTCTAAGCTTAATCCCATGGCTCAGGAGTTTGTTCCTCCT 584
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 519 AAAGATTTGGCTGATGCGTTTTCTAAGCTTAATCCGATGGCTCAGGAGTTTGTTCCTCCT 578
Query 585 TCTCTCGCTCGAAGTCAATCTGGGGTTTTCAGAAATGGATTAGGGTTTACTAACAATTTT 644
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 579 TCTCTTGCTCGAAGTCAATCTGGGGTTTTGAGAAATGGATTAGGGTTTACTAACAATTTT 638
Query 645 GCAGCCCCACCTAAACTTGCTGATGGGAATGATCATTTTCCTACAAGGAGAAGGAGTTTT 704
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 639 GCAGCCCCACCTAAACTTGCTGATGGGAATGATCATTTTCCTAGAAGGAGAAGGAGTTTT 698
Query 705 GGCCAAGGGAAGCGAAGAATTAACAAAAGAACAAGCTTGGCTCAGAAGGACGATGTAATC 764
|||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||
Sbjct 699 GGCCAAGGGAAGCGAAGAATGAACAAAAGGACAAGCTTGGCTCAGAAGGATGATGTAATC 758
Query 765 AGGAGAACTGTATATGTCTCCGACATTGACCAACAGGTTACCGAGGAGAACCTCGCAGGT 824
|||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||
Sbjct 759 AGGAGAACTGTATATGTCTCTGACATCGACCAACAGGTTACAGAGGAGAACCTCGCAGGT 818
Query 825 GTCTTTATTAATTGTGGACAGGTTGTTGATTGTCGTGTATGCGGTGACCCAAATTCTGTC 884
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 819 GTCTTTATTAACTGTGGACAGGTTGTTGATTGTCGTGTATGCGGTGATCCAAATTCTGTC 878
Query 885 CTTCGTTTTGCTTTCATTGAATTTACCAATGAAGAGGGAGCTAGGGCTGCTTTGAGCATG 944
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 879 CTTCGTTTCGCTTTCATTGAATTTACCAATGAAGAGGGAGCTAGAGCTGCTTTGAGCATG 938
Query 945 TCGGGTACTGTGCTCGGTTTTTATCCTCTTAAGGTTCTTCCTTCCAAAACCGCTATTGCC 1004
|||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 939 TCGGGTACTGTGCTAGGTTTTTACCCTCTTAAGGTTCTTCCTTCCAAAACAGCTATTGCT 998
Query 1005 CCTGTTAACCCAACTTTTCTTCCAAGATCTGAGGATGAGCGTGAGATGTGCGTTAGGACT 1064
||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 999 CCTGTTAACCCGACTTTTCTTCCACGATCTGAGGATGAGCGTGAGATGTGCGTTAGGACT 1058
Query 1065 GTTTACTGTACCAACATTGACAAGCGGATCACTCAAATTGACTTGAAAGGCTTCTTTGAA 1124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1059 GTTTACTGTACCAACATTGACAAGCGGATCACTCAAATTGACTTGAAAGGCTTCTTTGAA 1118
Query 1125 ATGCTTTGCGGGGAGGTTCATCGTCTGAGACTTGGAGACTATCACCACCAAACCCGTATT 1184
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1119 ATGCTTTGCGGGGAGGTTCATCGTCTGAGGCTTGGAGACTATCACCACCAAACCCGTATT 1178
Query 1185 GCTTTTGTTGAGTTTGCGATGGCGGAAAGTGCAATTGCTGCGCTTCACTGCAGTGGTATT 1244
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 1179 GCTTTTGTTGAGTTTGCGATGGCGGAAAGCGCAATTGCTGCGCTTCACTGCAGCGGTATT 1238
Query 1245 GTCTTGGGGGCACTCCCAATAAGGGTAAGTCCATCAAAGACACCAGTAAGGCCGCACTTT 1304
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1239 GTCTTGGGGGCACTCCCAATAAGGGTAAGTCCATCGAAGACACCAGTAAGGCCGCATTTT 1298
Query 1305 CCCCGCGCTGATTTCAAGTGAAA-TGATCGC-GAAAAAATGTCAAATTATATAGCAAACg 1362
||||||||||| ||||||||||| | | || | | | | | |||||||||||||||||
Sbjct 1299 CCCCGCGCTGAGTTCAAGTGAAACTC-TAGCCGGAGATCT-TAAAATTATATAGCAAACG 1356
Query 1363 agagagagagaga-aa-gcagaagaagatgaagtctaaagaagaagGTACTTGAGGCGTT 1420
||||||||||||| || ||||||||||| | ||||||||||||||||||||||||||||
Sbjct 1357 AGAGAGAGAGAGAGAAAGCAGAAGAAGA--A-GTCTAAAGAAGAAGGTACTTGAGGCGTT 1413
Query 1421 TTGTGTTTATATATAAA-CTCTTTTTAGATCTATTTTAAGTTA-TGCTTCGCGGTCGCAG 1478
||||||||||||||||| |||||| ||||| |||||||||||| ||||||||||||||||
Sbjct 1414 TTGTGTTTATATATAAAACTCTTTCTAGATTTATTTTAAGTTAATGCTTCGCGGTCGCAG 1473
Query 1479 AGCCTGCCCGGTATCTTTGAACAACTCAAGAACTTTGGTCTAAAC-TTTCTCCTTTCTAT 1537
||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |
Sbjct 1474 AGCCTGCCCGGTATCTTTGAACAACTCAACAACTTTGGTCTAAACCTTTCTCCTTTCTTT 1533
Query 1538 AGTCACCaaaaacaaaaaaaaaaaaaaaaTTGGATTATTTTTGTTGTTGTTGAAATTGAG 1597
|||| ||||| ||| ||||| ||| ||||||||||||||||||||||| |
Sbjct 1534 AGTCTCCAAACACACAAAAAT--------TTG-ATTATTTTTGTTGTTGTTGAAAT--A- 1581
Query 1598 TTACCCTTTGGATAtttttttATGAATTATTTAAGACATTTGGTGAAATTTT 1649
|||||||||||||||| |||| ||||||||||||||||| ||||||||
Sbjct 1582 ---CCCTTTGGATATTTTT--ATGACTTATTTAAGACATTTGGAGAAATTTT 1628
> AT3G14450.1 | Symbols: CID9 | CTC-interacting domain 9 | chr3:4849788-4851601
FORWARD LENGTH=984
Length=984
Score = 141 bits (76), Expect = 2e-32
Identities = 420/580 (72%), Gaps = 47/580 (8%)
Strand=Plus/Plus
Query 743 GGCTCAGAAG-GACGAT-GTAATCAGGAGAACTGTATATGTCTCCGACATTGACCAACAG 800
|||||| ||| || ||| || || || ||||| || ||||| || |||||||||| | ||
Sbjct 396 GGCTCA-AAGAGAGGATAGT-ATTAGAAGAACAGTTTATGTTTCTGACATTGACC-AGAG 452
Query 801 -GTTACCGAGGAGAACCTCGCAGG-TGTCTTTATTAATTGTGGACAGGTTGTTGATTGTC 858
|| || |||||| || || || | | |||| ||| |||||||| |||||||| |||
Sbjct 453 TGTGACTGAGGAGGGTCTTGCTGGCT-TGTTTAGTAACTGTGGACAAGTTGTTGACTGTA 511
Query 859 GTGTATGCGGTGACCCAAATTCTGTCCTTCGTTTTGC-TTTCATTGAATTTACCAATGAA 917
| | || || || ||| |||| || ||||| ||||| ||| |||| ||| | ||||
Sbjct 512 GAATTTGTGGCGATCCACATTCGGTTCTTCGATTTGCGTTT-GTTGAGTTTGCTGATGAC 570
Query 918 GAGGGAGCTA-GGGCTGCTTTGAGCATGTCG-GGTACTGTGCTCGGTTTTTATCCTC-TT 974
|||| || | | ||||| ||| | | | || || ||||||| || || || | |
Sbjct 571 CAGGGCGC-ACATGAAGCTTTAAGCCT-TGGTGGAACAATGCTCGGGTTCTA-CC-CGGT 626
Query 975 AAGGTTCTT-CCTTCCAAAACCGCTATTGCC--CCTGTTAA-CCCAACTTTTCTTCCAAG 1030
||| |||| || || ||||| || | | || || || || ||| || |||||||||||
Sbjct 627 GAGGGTCTTACCCTCAAAAACTGCCA-T-CCTACCAGTGAATCCC-ACATTTCTTCCAAG 683
Query 1031 ATCTGAGGATGAGCGTGAGATGTGCGTTAGGACTGTTTACTGTACCAACATTGACAAGCG 1090
|| || ||||| | ||||||||| ||||| | || || |||||||| ||||||
Sbjct 684 GTCAGAAGATGAAAGGGAGATGTGCACAAGGACAATCTATTGCACCAACATCGACAAG-A 742
Query 1091 GA-TCACTCAAATTGACT-TGA-AAGGCTTCTTTGAA-ATGCTTTGCGGGGAGGTTCA-T 1145
| | ||||| ||| | ||| || |||||||||| ||| || || |||| | | |
Sbjct 743 AAGTTTCTCAAGCTGA-TGTGAGAA-ACTTCTTTGAATCTGC-ATGTGGTGAGG-TAACT 798
Query 1146 CGTCTGA-G--ACTTGGAGA-CTATCACCA-CCAAACCCGTATTGCTTTTGTTGAGTTTG 1200
||||||| | ||||| || | || || | ||| || || ||||||||||| ||||
Sbjct 799 CGTCTGAGGCTTCTTGGCGATCAAT-TGCATTC-AACTCGCATAGCTTTTGTTGAATTTG 856
Query 1201 CGATGGCGGAAAGTGCAATT-GCTGCGCTTC-ACTGCAGTGGTATTGTC-TTGGGGGCAC 1257
| |||| || |||||| || || |||| || | ||||| || || ||| || || |||
Sbjct 857 CTCTGGCAGATAGTGCACTTAGC-GCGC-TCAATTGCAGCGGAATGGTCGTT-GGATCAC 913
Query 1258 TCCCAATAAGGGTAAGTCCATCAAAGACACCAGTAAGGCC 1297
|| ||||||||||||||||||||||||||||| |||||
Sbjct 914 AACCGATAAGGGTAAGTCCATCAAAGACACCAGTGAGGCC 953
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82328893800
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5