BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg485300 Length=2797 Score E Sequences producing significant alignments: (Bits) Value AT3G49400.1 | Symbols: | Transducin/WD40 repeat-like superfami... 4359 0.0 > AT3G49400.1 | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr3:18319249-18324482 REVERSE LENGTH=2788 Length=2788 Score = 4359 bits (2360), Expect = 0.0 Identities = 2664/2808 (95%), Gaps = 31/2808 (1%) Strand=Plus/Plus Query 1 ACTAGGGTTTCCGTACTGAATCAAATTCATCAGTTCG--T--TTGTCCAAAGCAAAGCAG 56 |||||||||||||||||||||||| |||||||||||| | ||||| |||||||||||| Sbjct 1 ACTAGGGTTTCCGTACTGAATCAACTTCATCAGTTCGTTTCGTTGTCAAAAGCAAAGCAG 60 Query 57 AGCAAGtttttttttttCCCTCCaaaaaaaTTC--AGTTGATCTTCAAACGGATCTATTT 114 |||||| |||| |||||||||| ||||||| ||||||||||| || | | ||| Sbjct 61 AGCAAG--TTTTATTTTCCCTCC---AAAATTCTAAGTTGATCTTC--AC---T-T-TTT 108 Query 115 GATGGCGTCGCGGTTTCAGGAAGCTTCACTTGTTACTTCACCATCGTATCCTAACGCCGT 174 |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct 109 GATGGCGTCGCGGTTTCAGGAAGCTTCACTGGTTACTTCACCGTCGTATCCTAACGCCGT 168 Query 175 CGCTTGGTCATCGGAAAATCTCATCGCCGTCGCTGCTGGTCATCTAGTCATCATCATTAA 234 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 169 CGCTTGGTCATCGGAAAATCTCATCGCCGTCGCTGCTGGTCATCTAGTCATCATCATTAA 228 Query 235 TCCGGCTTTGCCTTCTGGACCTCGTGGATTGATCACAATCTCTGACGCTGAGCCTTATCA 294 ||||||||||||| |||| ||||||||||||||||||||||||||||| |||| |||||| Sbjct 229 TCCGGCTTTGCCTACTGGCCCTCGTGGATTGATCACAATCTCTGACGCCGAGCTTTATCA 288 Query 295 GATTGGTCGTGTTCGCTCTCAAGATTTGCTGACTGGTGGACTCTTACCTTCGAGTTTGAA 354 |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct 289 GATTGGTCGTGTTCGCTCTCAAGATTTGCTAACTGGTGGACTCTTGCCTTCGAGTTTGAA 348 Query 355 GCGGGAAAGGAA-TCCATGTGTTCGATCTCTCTCATGGTCTGAGATAGGAATGTCTCCCA 413 |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 349 GCGGGAAA-GAAGTCCATGTGTTCGATCTCTCTCATGGTCTGAGATAGGAATGTCTCCAA 407 Query 414 ACCACGGGTGCTTACTGGCTGTTTGCACAGCGGAAGGAAGGGTTAAGCTATACCGACCTC 473 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 408 ACCACGGGTGCTTACTGGCTGTTTGCACAGCGGAAGGAAGGGTTAAGCTATACCGACCTC 467 Query 474 CATATTCTGATTTTTGTGCTGAGTGGATTGAGATTGTTGATGTATCTAAAATGCTTTATG 533 ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 468 CATATTCTGATTTCTGTGCTGAGTGGATTGAGATTGTTGATATATCTAAAATGCTTTATG 527 Query 534 AGAATCTATCAAGCATGAACTTTGGAGAGTCCAACAATCCTTCTACTTCATTATCTAAGG 593 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 528 AGAATCTATCAAGCATGAACTTTGGAGAGTCCAAAAATCCTTCTACTTCATTATCTAAGG 587 Query 594 ATCAATTGGTAGAACATCACCATGAAGACGATGAAAGGATTTCAAGTCTGAAGGCACGCA 653 ||||| ||||||||||| ||||||| || ||||||||||||||||||||||||||||||| Sbjct 588 ATCAAGTGGTAGAACATGACCATGAGGAGGATGAAAGGATTTCAAGTCTGAAGGCACGCA 647 Query 654 AGCGAAGAAAAACAAGCGCAAACAACATCAACTTGCATGAAAAGAATTATACAGATCGAG 713 |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| Sbjct 648 AGCGAAGAAAAACAAGTGCAAATAACATCAACTTGCATGAAAAGAATTATACAGATCGAG 707 Query 714 CATCATGTTCCAAGCAAGACAGTCAAGCAGAGCATAATGTACTTGAGATTGAAGTATATA 773 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 708 CATCATGTTCCAAGCAAGACAGTAAAGCAGAGCATAATGTACTTGAGATTGAAGTATATA 767 Query 774 AACAGGCAAGCAATGGCCAAGATTGTCACTCTTTGCCTAAAGCTCTGAAAAAGTGTAGTC 833 ||||||||||||||||||||||| ||| || |||||||||||||| ||||| || |||| Sbjct 768 AACAGGCAAGCAATGGCCAAGATCGTCGTTCCTTGCCTAAAGCTCTAAAAAAATGCAGTC 827 Query 834 AAGAGATAAGTCCAG-AAACGTATGTGTCTCGTGAGGCATTATTATCCTCCCTTTCCGTA 892 ||||||||||||| | |||||||||||||||||||||||||||||||||||| |||||| Sbjct 828 AAGAGATAAGTCC-GCAAACGTATGTGTCTCGTGAGGCATTATTATCCTCCCATTCCGTT 886 Query 893 GCCTGGTCATCTCTACTAAGATTCTCATCAGAAATTTCTTCTAGTGAGAATATGTTAAGA 952 |||||||||||||| ||||||||||||||||||| ||| | | ||| ||||||||||||| Sbjct 887 GCCTGGTCATCTCTTCTAAGATTCTCATCAGAAAGTTC-T-T-GTGGGAATATGTTAAGA 943 Query 953 TTCTCGCTTTTGGCAATTGGTTCAAAGTCCGGTAGTGTTTCCATATGGAAAGTTCATGCA 1012 ||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||| Sbjct 944 TTCTCTCTTTTGGCAATTGGTTCAAAGTCCGGGAGCGTTTCCATATGGAAAGTTCATGCA 1003 Query 1013 CCTGAATGCTATCACATTGAACGTA-CTAATGTATCTCCCATGGTGGAACTTCA-TGCTA 1070 ||||||||||||||||||||||| | | |||||||||||||||||||||||| | ||||| Sbjct 1004 CCTGAATGCTATCACATTGAACGCAGC-AATGTATCTCCCATGGTGGAACTT-ACTGCTA 1061 Query 1071 TAATTCAGGCCCATAGCTCATGGGTTTCAACTATGAGTTGGGGAATTTTTGGCTGTGATT 1130 || ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1062 TAGTTCAGACCCATAGCTCATGGGTTTCAACAATGAGTTGGGGAATTTTTGGCTGTGATT 1121 Query 1131 CTTTGAATCCGCAAGTGGTGTTGGTTACTGGGAGTTGCGATGGTAGTGTAAAAATTTGGA 1190 ||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| Sbjct 1122 CTTCGAATCCGCAAGTGGTGTTGGTTACTGGGAGTTGTGATGGTAGTGTGAAAATTTGGA 1181 Query 1191 TGAGCAACAACGAAGACTTGCAAAAATCTGTGGATGTCTATAAATCTTCATTCTCTCTAT 1250 |||||||||| |||||||||||||| |||||||| ||||||||||||||||||| |||| Sbjct 1182 TGAGCAACAAAGAAGACTTGCAAAATTCTGTGGAGGTCTATAAATCTTCATTCTTTCTAC 1241 Query 1251 TTAAACAGGTTGTAGCGGTGAATCCTGTTCAGGTTTCAACACTTTCTTTTGTTGTAAGCA 1310 | ||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1242 TAAAAGAGGTTGTAGCAGTGAATCCTGTTCAGGTTTCAACGCTTTCTTTTGTTGTAAGCA 1301 Query 1311 ATCATTATAATGCAATGCACTTGGCAATCGGCAAAGGCTCTGGTTCTTTTGAAGTATGGA 1370 | ||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||| Sbjct 1302 ACCATTATAATGCAATGCACTTGGCAATCGGTAAAGGATCTGGTTCTTTCGAAGTATGGA 1361 Query 1371 AGTGTGAAATATCTACAAGAAAGTTTGAACAAATTGTTTCAAGTAATGCTCATAACCAAG 1430 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1362 AGTGTGAAATATCTACAAGAAAGTTTGAACAAATTGTTTCAACTAATGCTCATAACCAAG 1421 Query 1431 TGGTTACAGGTCTAGCTTGGTCATATGATGGCCGTTGTTTGTACAGTTGCATTCAGGATA 1490 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1422 TGGTTACAGGTCTAGCTTGGTCATATGATGGCCGTTGTTTGTACAGTTGCAGTCAGGATA 1481 Query 1491 ATTATGTCTTGAACTGGATTTTGTGTGAGAATACCATCTCTGAAGTGCCAATTCCTGCAA 1550 |||||||| || ||||||||| ||||||||| ||||||||||||||||||||||||||| Sbjct 1482 ATTATGTCCGGAGCTGGATTTTATGTGAGAATGCCATCTCTGAAGTGCCAATTCCTGCAA 1541 Query 1551 ACACTCCTGGTCTCAGTAGCACGACTGATCTTCCTGATGATTTCCTGTCATGCCTTGGTG 1610 ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| Sbjct 1542 ACACTCCTGGTCTCAGTAGCACGACTGATCTTCCTGATGATTTTCTATCATGCCTTGGTG 1601 Query 1611 TGGCATTGTCCCCTGGAAACCTTGCTGTTGCTTTGGTCCGCAACTTTAACGTTGAACTCT 1670 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1602 TGGCATTGTCACCTGGAAACCTTGCTGTTGCTTTGGTCCGCAACTTTAACGTTGAACTCT 1661 Query 1671 TGAATCCGATGTACCAAGCCAGGTCGCAGAAGGCTGCTGTAGAATTCCTCTGGAATGGTG 1730 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1662 TGAATCCAATGTACCAAGCCAGGTCGCAGAAGGCTGCTGTAGAATTCCTCTGGAATGGTG 1721 Query 1731 CACAACAATCTGGTGAGTCAGAAGATTCTTCAGAGACGATAACCGAAGCTATTCTGGGAT 1790 ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| | Sbjct 1722 CACAACAATCTGGTGAGTCAGAAGATTCTACAGAGACGGTAACCGAAGCTATTCTGGGTT 1781 Query 1791 TCTCAAAAAATGAATTCGCATGTTGGGAATCTAATTTTCTCTGGTCGTTGAAAGAATTCA 1850 ||||||| |||||||||||| ||||||||| ||| ||||||||||||| |||||||||| Sbjct 1782 TCTCAAAGAATGAATTCGCAAATTGGGAATCCAATATTCTCTGGTCGTTAAAAGAATTCA 1841 Query 1851 AAGATTTGAATAAGCCTCTAGTTCTTTGGGATATGGTAGCTGCAATGCTGGCGTTCAAAC 1910 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1842 ACTATTTGAATAAGCCTCTAGTTCTTTGGGATATGGTAGCTGCAATGCTGGCGTTCAAAC 1901 Query 1911 AATCAATGCCAGAGTTTGTTGAATTGGTATTAACCAAATGGCTCTCTGTGTCATACCTCG 1970 ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| | Sbjct 1902 AATCAATGCCAGAGTTTGTTGAATTAGTATTAACTAAATGGCTCTCTGTGTCATACCTTG 1961 Query 1971 GATTTCATGCTGATATCTCCATGGAAGATCTGGTGCCAAAGATCACCAAATGCTTCTCTG 2030 ||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||| Sbjct 1962 GATTTCATGATGATATCTCCATGGAAGATCTCGTGCCAAAGATCACCAAACGCTTCTCTG 2021 Query 2031 CTGTTCCTTCCAGGCTGTTACACATTCTCAACGTAATCTCTAGACGTGTTATGTTATCGG 2090 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 2022 ATGTTCCTTCCAGGCTGTTACACATTCTCAACGTAATCTCTAGACGTGTAATGTTATCGG 2081 Query 2091 AGCTCAAAACAGTGGAAATCAACAGAAAACTTCAAGGTCAGAGAACGAACGATGAAGAAG 2150 | |||||||||| ||||||||||||||||| ||||||||||||||||||||||||| || Sbjct 2082 AACTCAAAACAGAAGAAATCAACAGAAAACTGCAAGGTCAGAGAACGAACGATGAAGGAG 2141 Query 2151 AAATTGATCTGTGGCTCAAACTGCTTGAAGAAAGTGAACGAGAACTCCGGGAAAGACTGG 2210 |||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| Sbjct 2142 AAATTGATCTGTGGCTCAAACTGCTTCAAGAAAGTGAACGAGAACTCCGAGAAAGACTGG 2201 Query 2211 TTGGTCTCAGTTTCTCGGCTTATCTACTCGCTGAGTCATCTCAGGGTACTCTTTCGCCTT 2270 ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| Sbjct 2202 TTGGTCTCAGTTTCTCGGCTTATTTACTCGCTGAGTCATCTCAGGGTACTATTTCGCCTC 2261 Query 2271 CCTCTTGGAATTGGTGTCCAGCTGGATTGGCTCAGTTGCAACAATGGGTTGAGATAAATC 2330 |||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| Sbjct 2262 CCTCTTGGAATTGGCGTCCAGCTGGATTGGCTCTGTTGCAACAATGGGTTGAGATAAATC 2321 Query 2331 GCGATATTGTCCATAGTCAGCTGGAAACACTTTCCGTAGAAGTGAAATCTAGTCTAACGA 2390 | ||||||||||||||||||||||||||||||||| ||||||| |||||||||| ||||| Sbjct 2322 GTGATATTGTCCATAGTCAGCTGGAAACACTTTCCTTAGAAGTAAAATCTAGTCGAACGA 2381 Query 2391 GATCAAGTAATAGCACAGAAACCT-CATTAGAGGAAGAGAAATGTCCTTATTGTGCAGCG 2449 ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| Sbjct 2382 GATCAAGTAATAGCACAGAAA-CTGCATTAGAGGAAGAGAAATGTCCTTATTGTGCAGCG 2440 Query 2450 CCAGTCAATTTCCACTCAGCGGAGGAAGCCTTTTGCGAATCTCCGCACCaaaaaaaGAAG 2509 ||||| |||||||||||||| ||||||||||||||||||||| ||||||||||||| ||| Sbjct 2441 CCAGTAAATTTCCACTCAGCAGAGGAAGCCTTTTGCGAATCTTCGCACCAAAAAAAAAAG 2500 Query 2510 AAGAGCAAAGACAAAGAGAGATGTGATCAAAGCCACAAGCTTGAGAGGTGTTGTGTCTCA 2569 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 2501 AAGAGCAAAGACAAAGAGAGATGTGATGAAAGCCACAAGCTTGAGAGGTGTTGTGTCTCA 2560 Query 2570 ATGCAAGTATGTCCACCAACTCCTTTATGGTTCTGCAAATGCTGCAACCGAATGACTTTA 2629 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2561 ATGCAAGTATGTCCACCAACTCCTTTATGGTTCTGCAAATGCTGCAACCGAATGACTTTA 2620 Query 2630 GAACTCGCTCCAGAGACCTTATTTGCATTGCCTTCATTCCCGAGTGATCTCAAATCACTT 2689 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 2621 GAACTCGCTCCAGAGACCTTATTTGCATTGCCTTCGTTCCCGAGTGATCTCAAATCACTT 2680 Query 2690 CCAAAATCCTCCTTTAGCAAAGCTGCCTCGAAACCGTTCTGCCTCTTCTGTGGAGTTCTC 2749 |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 2681 CCAAAATCTTCCTTTAGCAAAGTTGCCTCGAAACCGTTCTGCCTCTTCTGTGGAGTTCTC 2740 Query 2750 CTGCAGAGAAAGCAGCCTGAGTTTCTGCTCTCAGCTTCACCTGTGTGA 2797 |||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 2741 TTGCAGAGAAAGCAGCCTGAGTTTCTGCTCTCAGCCTCACCTGTGTGA 2788 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 138962432110 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5