BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485300
Length=2797
Score E
Sequences producing significant alignments: (Bits) Value
AT3G49400.1 | Symbols: | Transducin/WD40 repeat-like superfami... 4359 0.0
> AT3G49400.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr3:18319249-18324482 REVERSE LENGTH=2788
Length=2788
Score = 4359 bits (2360), Expect = 0.0
Identities = 2664/2808 (95%), Gaps = 31/2808 (1%)
Strand=Plus/Plus
Query 1 ACTAGGGTTTCCGTACTGAATCAAATTCATCAGTTCG--T--TTGTCCAAAGCAAAGCAG 56
|||||||||||||||||||||||| |||||||||||| | ||||| ||||||||||||
Sbjct 1 ACTAGGGTTTCCGTACTGAATCAACTTCATCAGTTCGTTTCGTTGTCAAAAGCAAAGCAG 60
Query 57 AGCAAGtttttttttttCCCTCCaaaaaaaTTC--AGTTGATCTTCAAACGGATCTATTT 114
|||||| |||| |||||||||| ||||||| ||||||||||| || | | |||
Sbjct 61 AGCAAG--TTTTATTTTCCCTCC---AAAATTCTAAGTTGATCTTC--AC---T-T-TTT 108
Query 115 GATGGCGTCGCGGTTTCAGGAAGCTTCACTTGTTACTTCACCATCGTATCCTAACGCCGT 174
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 109 GATGGCGTCGCGGTTTCAGGAAGCTTCACTGGTTACTTCACCGTCGTATCCTAACGCCGT 168
Query 175 CGCTTGGTCATCGGAAAATCTCATCGCCGTCGCTGCTGGTCATCTAGTCATCATCATTAA 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 169 CGCTTGGTCATCGGAAAATCTCATCGCCGTCGCTGCTGGTCATCTAGTCATCATCATTAA 228
Query 235 TCCGGCTTTGCCTTCTGGACCTCGTGGATTGATCACAATCTCTGACGCTGAGCCTTATCA 294
||||||||||||| |||| ||||||||||||||||||||||||||||| |||| ||||||
Sbjct 229 TCCGGCTTTGCCTACTGGCCCTCGTGGATTGATCACAATCTCTGACGCCGAGCTTTATCA 288
Query 295 GATTGGTCGTGTTCGCTCTCAAGATTTGCTGACTGGTGGACTCTTACCTTCGAGTTTGAA 354
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 289 GATTGGTCGTGTTCGCTCTCAAGATTTGCTAACTGGTGGACTCTTGCCTTCGAGTTTGAA 348
Query 355 GCGGGAAAGGAA-TCCATGTGTTCGATCTCTCTCATGGTCTGAGATAGGAATGTCTCCCA 413
|||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 349 GCGGGAAA-GAAGTCCATGTGTTCGATCTCTCTCATGGTCTGAGATAGGAATGTCTCCAA 407
Query 414 ACCACGGGTGCTTACTGGCTGTTTGCACAGCGGAAGGAAGGGTTAAGCTATACCGACCTC 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 408 ACCACGGGTGCTTACTGGCTGTTTGCACAGCGGAAGGAAGGGTTAAGCTATACCGACCTC 467
Query 474 CATATTCTGATTTTTGTGCTGAGTGGATTGAGATTGTTGATGTATCTAAAATGCTTTATG 533
||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 468 CATATTCTGATTTCTGTGCTGAGTGGATTGAGATTGTTGATATATCTAAAATGCTTTATG 527
Query 534 AGAATCTATCAAGCATGAACTTTGGAGAGTCCAACAATCCTTCTACTTCATTATCTAAGG 593
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 528 AGAATCTATCAAGCATGAACTTTGGAGAGTCCAAAAATCCTTCTACTTCATTATCTAAGG 587
Query 594 ATCAATTGGTAGAACATCACCATGAAGACGATGAAAGGATTTCAAGTCTGAAGGCACGCA 653
||||| ||||||||||| ||||||| || |||||||||||||||||||||||||||||||
Sbjct 588 ATCAAGTGGTAGAACATGACCATGAGGAGGATGAAAGGATTTCAAGTCTGAAGGCACGCA 647
Query 654 AGCGAAGAAAAACAAGCGCAAACAACATCAACTTGCATGAAAAGAATTATACAGATCGAG 713
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 648 AGCGAAGAAAAACAAGTGCAAATAACATCAACTTGCATGAAAAGAATTATACAGATCGAG 707
Query 714 CATCATGTTCCAAGCAAGACAGTCAAGCAGAGCATAATGTACTTGAGATTGAAGTATATA 773
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 708 CATCATGTTCCAAGCAAGACAGTAAAGCAGAGCATAATGTACTTGAGATTGAAGTATATA 767
Query 774 AACAGGCAAGCAATGGCCAAGATTGTCACTCTTTGCCTAAAGCTCTGAAAAAGTGTAGTC 833
||||||||||||||||||||||| ||| || |||||||||||||| ||||| || ||||
Sbjct 768 AACAGGCAAGCAATGGCCAAGATCGTCGTTCCTTGCCTAAAGCTCTAAAAAAATGCAGTC 827
Query 834 AAGAGATAAGTCCAG-AAACGTATGTGTCTCGTGAGGCATTATTATCCTCCCTTTCCGTA 892
||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 828 AAGAGATAAGTCC-GCAAACGTATGTGTCTCGTGAGGCATTATTATCCTCCCATTCCGTT 886
Query 893 GCCTGGTCATCTCTACTAAGATTCTCATCAGAAATTTCTTCTAGTGAGAATATGTTAAGA 952
|||||||||||||| ||||||||||||||||||| ||| | | ||| |||||||||||||
Sbjct 887 GCCTGGTCATCTCTTCTAAGATTCTCATCAGAAAGTTC-T-T-GTGGGAATATGTTAAGA 943
Query 953 TTCTCGCTTTTGGCAATTGGTTCAAAGTCCGGTAGTGTTTCCATATGGAAAGTTCATGCA 1012
||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 944 TTCTCTCTTTTGGCAATTGGTTCAAAGTCCGGGAGCGTTTCCATATGGAAAGTTCATGCA 1003
Query 1013 CCTGAATGCTATCACATTGAACGTA-CTAATGTATCTCCCATGGTGGAACTTCA-TGCTA 1070
||||||||||||||||||||||| | | |||||||||||||||||||||||| | |||||
Sbjct 1004 CCTGAATGCTATCACATTGAACGCAGC-AATGTATCTCCCATGGTGGAACTT-ACTGCTA 1061
Query 1071 TAATTCAGGCCCATAGCTCATGGGTTTCAACTATGAGTTGGGGAATTTTTGGCTGTGATT 1130
|| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1062 TAGTTCAGACCCATAGCTCATGGGTTTCAACAATGAGTTGGGGAATTTTTGGCTGTGATT 1121
Query 1131 CTTTGAATCCGCAAGTGGTGTTGGTTACTGGGAGTTGCGATGGTAGTGTAAAAATTTGGA 1190
||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 1122 CTTCGAATCCGCAAGTGGTGTTGGTTACTGGGAGTTGTGATGGTAGTGTGAAAATTTGGA 1181
Query 1191 TGAGCAACAACGAAGACTTGCAAAAATCTGTGGATGTCTATAAATCTTCATTCTCTCTAT 1250
|||||||||| |||||||||||||| |||||||| ||||||||||||||||||| ||||
Sbjct 1182 TGAGCAACAAAGAAGACTTGCAAAATTCTGTGGAGGTCTATAAATCTTCATTCTTTCTAC 1241
Query 1251 TTAAACAGGTTGTAGCGGTGAATCCTGTTCAGGTTTCAACACTTTCTTTTGTTGTAAGCA 1310
| ||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1242 TAAAAGAGGTTGTAGCAGTGAATCCTGTTCAGGTTTCAACGCTTTCTTTTGTTGTAAGCA 1301
Query 1311 ATCATTATAATGCAATGCACTTGGCAATCGGCAAAGGCTCTGGTTCTTTTGAAGTATGGA 1370
| ||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||
Sbjct 1302 ACCATTATAATGCAATGCACTTGGCAATCGGTAAAGGATCTGGTTCTTTCGAAGTATGGA 1361
Query 1371 AGTGTGAAATATCTACAAGAAAGTTTGAACAAATTGTTTCAAGTAATGCTCATAACCAAG 1430
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1362 AGTGTGAAATATCTACAAGAAAGTTTGAACAAATTGTTTCAACTAATGCTCATAACCAAG 1421
Query 1431 TGGTTACAGGTCTAGCTTGGTCATATGATGGCCGTTGTTTGTACAGTTGCATTCAGGATA 1490
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1422 TGGTTACAGGTCTAGCTTGGTCATATGATGGCCGTTGTTTGTACAGTTGCAGTCAGGATA 1481
Query 1491 ATTATGTCTTGAACTGGATTTTGTGTGAGAATACCATCTCTGAAGTGCCAATTCCTGCAA 1550
|||||||| || ||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 1482 ATTATGTCCGGAGCTGGATTTTATGTGAGAATGCCATCTCTGAAGTGCCAATTCCTGCAA 1541
Query 1551 ACACTCCTGGTCTCAGTAGCACGACTGATCTTCCTGATGATTTCCTGTCATGCCTTGGTG 1610
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 1542 ACACTCCTGGTCTCAGTAGCACGACTGATCTTCCTGATGATTTTCTATCATGCCTTGGTG 1601
Query 1611 TGGCATTGTCCCCTGGAAACCTTGCTGTTGCTTTGGTCCGCAACTTTAACGTTGAACTCT 1670
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1602 TGGCATTGTCACCTGGAAACCTTGCTGTTGCTTTGGTCCGCAACTTTAACGTTGAACTCT 1661
Query 1671 TGAATCCGATGTACCAAGCCAGGTCGCAGAAGGCTGCTGTAGAATTCCTCTGGAATGGTG 1730
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1662 TGAATCCAATGTACCAAGCCAGGTCGCAGAAGGCTGCTGTAGAATTCCTCTGGAATGGTG 1721
Query 1731 CACAACAATCTGGTGAGTCAGAAGATTCTTCAGAGACGATAACCGAAGCTATTCTGGGAT 1790
||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
Sbjct 1722 CACAACAATCTGGTGAGTCAGAAGATTCTACAGAGACGGTAACCGAAGCTATTCTGGGTT 1781
Query 1791 TCTCAAAAAATGAATTCGCATGTTGGGAATCTAATTTTCTCTGGTCGTTGAAAGAATTCA 1850
||||||| |||||||||||| ||||||||| ||| ||||||||||||| ||||||||||
Sbjct 1782 TCTCAAAGAATGAATTCGCAAATTGGGAATCCAATATTCTCTGGTCGTTAAAAGAATTCA 1841
Query 1851 AAGATTTGAATAAGCCTCTAGTTCTTTGGGATATGGTAGCTGCAATGCTGGCGTTCAAAC 1910
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1842 ACTATTTGAATAAGCCTCTAGTTCTTTGGGATATGGTAGCTGCAATGCTGGCGTTCAAAC 1901
Query 1911 AATCAATGCCAGAGTTTGTTGAATTGGTATTAACCAAATGGCTCTCTGTGTCATACCTCG 1970
||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
Sbjct 1902 AATCAATGCCAGAGTTTGTTGAATTAGTATTAACTAAATGGCTCTCTGTGTCATACCTTG 1961
Query 1971 GATTTCATGCTGATATCTCCATGGAAGATCTGGTGCCAAAGATCACCAAATGCTTCTCTG 2030
||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct 1962 GATTTCATGATGATATCTCCATGGAAGATCTCGTGCCAAAGATCACCAAACGCTTCTCTG 2021
Query 2031 CTGTTCCTTCCAGGCTGTTACACATTCTCAACGTAATCTCTAGACGTGTTATGTTATCGG 2090
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2022 ATGTTCCTTCCAGGCTGTTACACATTCTCAACGTAATCTCTAGACGTGTAATGTTATCGG 2081
Query 2091 AGCTCAAAACAGTGGAAATCAACAGAAAACTTCAAGGTCAGAGAACGAACGATGAAGAAG 2150
| |||||||||| ||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 2082 AACTCAAAACAGAAGAAATCAACAGAAAACTGCAAGGTCAGAGAACGAACGATGAAGGAG 2141
Query 2151 AAATTGATCTGTGGCTCAAACTGCTTGAAGAAAGTGAACGAGAACTCCGGGAAAGACTGG 2210
|||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 2142 AAATTGATCTGTGGCTCAAACTGCTTCAAGAAAGTGAACGAGAACTCCGAGAAAGACTGG 2201
Query 2211 TTGGTCTCAGTTTCTCGGCTTATCTACTCGCTGAGTCATCTCAGGGTACTCTTTCGCCTT 2270
||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 2202 TTGGTCTCAGTTTCTCGGCTTATTTACTCGCTGAGTCATCTCAGGGTACTATTTCGCCTC 2261
Query 2271 CCTCTTGGAATTGGTGTCCAGCTGGATTGGCTCAGTTGCAACAATGGGTTGAGATAAATC 2330
|||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2262 CCTCTTGGAATTGGCGTCCAGCTGGATTGGCTCTGTTGCAACAATGGGTTGAGATAAATC 2321
Query 2331 GCGATATTGTCCATAGTCAGCTGGAAACACTTTCCGTAGAAGTGAAATCTAGTCTAACGA 2390
| ||||||||||||||||||||||||||||||||| ||||||| |||||||||| |||||
Sbjct 2322 GTGATATTGTCCATAGTCAGCTGGAAACACTTTCCTTAGAAGTAAAATCTAGTCGAACGA 2381
Query 2391 GATCAAGTAATAGCACAGAAACCT-CATTAGAGGAAGAGAAATGTCCTTATTGTGCAGCG 2449
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 2382 GATCAAGTAATAGCACAGAAA-CTGCATTAGAGGAAGAGAAATGTCCTTATTGTGCAGCG 2440
Query 2450 CCAGTCAATTTCCACTCAGCGGAGGAAGCCTTTTGCGAATCTCCGCACCaaaaaaaGAAG 2509
||||| |||||||||||||| ||||||||||||||||||||| ||||||||||||| |||
Sbjct 2441 CCAGTAAATTTCCACTCAGCAGAGGAAGCCTTTTGCGAATCTTCGCACCAAAAAAAAAAG 2500
Query 2510 AAGAGCAAAGACAAAGAGAGATGTGATCAAAGCCACAAGCTTGAGAGGTGTTGTGTCTCA 2569
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2501 AAGAGCAAAGACAAAGAGAGATGTGATGAAAGCCACAAGCTTGAGAGGTGTTGTGTCTCA 2560
Query 2570 ATGCAAGTATGTCCACCAACTCCTTTATGGTTCTGCAAATGCTGCAACCGAATGACTTTA 2629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2561 ATGCAAGTATGTCCACCAACTCCTTTATGGTTCTGCAAATGCTGCAACCGAATGACTTTA 2620
Query 2630 GAACTCGCTCCAGAGACCTTATTTGCATTGCCTTCATTCCCGAGTGATCTCAAATCACTT 2689
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2621 GAACTCGCTCCAGAGACCTTATTTGCATTGCCTTCGTTCCCGAGTGATCTCAAATCACTT 2680
Query 2690 CCAAAATCCTCCTTTAGCAAAGCTGCCTCGAAACCGTTCTGCCTCTTCTGTGGAGTTCTC 2749
|||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2681 CCAAAATCTTCCTTTAGCAAAGTTGCCTCGAAACCGTTCTGCCTCTTCTGTGGAGTTCTC 2740
Query 2750 CTGCAGAGAAAGCAGCCTGAGTTTCTGCTCTCAGCTTCACCTGTGTGA 2797
|||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2741 TTGCAGAGAAAGCAGCCTGAGTTTCTGCTCTCAGCCTCACCTGTGTGA 2788
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 138962432110
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5