BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485301
Length=1882
Score E
Sequences producing significant alignments: (Bits) Value
AT3G49410.1 | Symbols: | Transcription factor IIIC, subunit 5 ... 2747 0.0
AT5G24450.1 | Symbols: | Transcription factor IIIC, subunit 5 ... 1230 0.0
> AT3G49410.1 | Symbols: | Transcription factor IIIC, subunit
5 | chr3:18324746-18329191 FORWARD LENGTH=1990
Length=1990
Score = 2747 bits (1487), Expect = 0.0
Identities = 1712/1817 (94%), Gaps = 30/1817 (2%)
Strand=Plus/Plus
Query 1 GCCGTCGCCGATGTCGGGAAACAGAAGAACTTGAGGC--AAAAAATTCTTGAATTAGAGA 58
|||||||||||||||||||||| |||||| ||||||| ||||||||| | ||| ||
Sbjct 1 GCCGTCGCCGATGTCGGGAAACCGAAGAATTTGAGGCAAAAAAAATTC--GTATTTCCGA 58
Query 59 AAAGAGTAAACTTTGGGAAGAAACAATGGGAATCATAGAAGAAGGAACAATCTCAGGTAC 118
| ||||||| || ||| ||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 59 AGAGAGTAATCTCTGGAAAGAATCAATGGGAATTATAGAAGAAGGAACAATCTCAGGTAC 118
Query 119 CTTGCCAAGCAAGGAGGCGTTTGTAGTACACTTCCCTGGTTACCCATCTTCTATTTCCCG 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 119 CTTGCCAAGCAAGGAGGCGTTTGTAGTACACTTCCCTGGTTACCCATCTTCTATTTCTCG 178
Query 179 AGCCATTGAAACACTTGGAGGTATCCAAGGAATTTCACAAGCAAGGGAATCAATTTCAAA 238
||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 179 AGCTATTGAAACACTTGGAGGTATCCAAGGAATTACACAAGCAAGGGAATCAATTTCAAA 238
Query 239 TAAGCTTGAGCTGC-GTTTCCGGCCTGAAGATCCTTATGCACATCCTGCATTGGGTGAAC 297
|||||||||||| | |||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 239 TAAGCTTGAGCTACGGTTT-CGGCCTGAAGATCCTTATGCACATCCTGCATTGGGAGAAC 297
Query 298 AACGTCCTTGCT-GTGGTTTTTTGTTAAGAATTTCTAAGCAGGATATCAAGAAACCTGAA 356
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 AACGTCCTTG-TAGTGGTTTTTTGTTAAGAATTTCTAAGCAGGATATCAAGAAACCTGAA 356
Query 357 AGTCAGCCTGTTCTTGCCACTAGTAGTGATGTATGTTTAGAGGAAGCTAGTACAGTTCTA 416
|||||| ||||||||| ||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 357 AGTCAGTCTGTTCTTGACACTAGTAGGGATGTATGTTTAGAGGAAGCTAGTCCAGTTCTA 416
Query 417 TGTGCAGATATCATAGCTCGTGTGTCTGAATCGTTTCACTTTGATGGCATGGCTGATTAT 476
|||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 417 TGTGCAGATATCGTAGCTCGTTTGTCTGAATCGTTTCACTTTGATGGCATGGCTGACTAT 476
Query 477 CAGCATGTTATTCCAATTCACGCGGACATTGCGCAGCAGAAAAAGAGAAAGTGGATGGAT 536
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 CAGCATGTTATTCCTATTCACGCGGACATTGCGCAGCAGAAAAAGAGAAAGTGGATGGAT 536
Query 537 GTTGATTCCCTTACAGGAAACAGTGATTTGATGGGCCTGGCTGATGAAGATGTGATGATG 596
|| ||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 537 GTGGATCCCCTTACAGGAAAAAGTGATTTGATGGGCCTGGCTGATGAAGATGTAATGATG 596
Query 597 TTATTGCCACAGTTCTTTGCACCCAAAGATATACCAGACAATGTGGCGTTGAAACCTCCG 656
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 597 TTATTGCCACAGTTCTTTGCACCCAAAGATATACCGGACAATGTGGCGTTGAAACCTCCG 656
Query 657 GCAACATCTGGTCCTAAAAAGAAAGATGATGCGGCAACTCAGAACTTTTATGAGATTGAT 716
|| ||||||||||| || |||||||||||||| || ||||||||||||||||||||||||
Sbjct 657 GCGACATCTGGTCCCAAGAAGAAAGATGATGCAGCGACTCAGAACTTTTATGAGATTGAT 716
Query 717 GTTGGCCCAGTATTTGCAATTGATTTCA--GT-------ATCCCAAAGAAACTGAAGTGG 767
||||||||||| |||||||||||||||| || |||||||||||||||||||||
Sbjct 717 GTTGGCCCAGTGTTTGCAATTGATTTCAGCGTCAAAGAGATCCCAAAGAAACTGAAGTGG 776
Query 768 GAAGACTTTGTTTCTCGCAGCTCCAACCACTGGCAATGGCAGGTATCAGTGTCTGCATTG 827
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 777 GAAGACTTTGTTTCTCGCAGCTCCAACCACTGGCAATGGCAGGTAGCAGTGTCTGCATTG 836
Query 828 TTTGAGGAGCGGCCTATATGGACAAGGGATTCTGTAGTTCAACGACTACTTGATAAAGGT 887
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 837 TTTGAGGAGCGGCCTATATGGACAAGGGATTCTGTTGTTCAACGACTACTTGATAAAGGT 896
Query 888 CTTAAATGTACACATCATATGTTAAACAGGTTTCTGCTCAGGGCTGCGTATTATTTCTCC 947
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 897 CTTAAATGTACACATCATATGTTAAACAGGTTTCTGCTCAGAGCTGCATATTATTTCTCC 956
Query 948 AGTGGTCCGTTTCTTAGGTTCTGGATTAAAAGAGGCTATGATCCACGGAATGATCCTGCG 1007
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 957 AGTGGTCCGTTTCTTAGGTTCTGGATTAAAAGAGGCTATGATCCACGGAATGATCCTGAG 1016
Query 1008 TCTCGTGTATATCAGAGAATGGAATTCAGGGTTCCTCCTGAATTACGGA-GTTATTGTGA 1066
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 1017 TCTCGTGTATATCAGAGAATGGAATTCAGGGTTCCTCCTGAATTAC-GAGGTTATTGTGA 1075
Query 1067 TGCCAATGCAACTAACAGCTCAAAGCCAAGCTGGAACGACATTTGTGCTTTTAAGTTATT 1126
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1076 TGCCAATGCAACTAACAACTCAAAGCCAAGCTGGAACGACATTTGTGCTTTTAAGTTATT 1135
Query 1127 TCCTTTCAAATGCCAAACGTTTCTGCAGTTGTTTGAACTTGACGACGAGTACATCCAGCG 1186
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1136 TCCTTTTAAATGCCAAACGTTTCTGCAGTTGTTTGAACTTGACGACGAGTACATCCAGCG 1195
Query 1187 AGAGATAAGAAAGCCTCCCAAGCAAACTACTTGTAGCCATAAATCAGGATGGTTTTCTGA 1246
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1196 AGAGATAAGAAAGCCTCCCAAGCAAACTACTTGTAGTCATAAATCAGGATGGTTTTCAGA 1255
Query 1247 AGCTC-TGCTTGATACTTTGAGACTCCGTGTAGCTGTGAGGTTTGTGTCTGTCTTCCCTG 1305
||| | |||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1256 AGC-CATGCTTGATACTTTGAGACTCCGTGTAGCTGTGAGGTTTGTGTCTGTGTTTCCTG 1314
Query 1306 AGCCAGGTTTCGAAGATGTATTTAAATCCATTCAAGAAGAATTTGAGAGGTCAGAAAAAG 1365
|| |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 1315 AGACAGGTTTCGAAGATGTATTTAAATCCATCCAAGAAGAATTTGAGAGATCAGAAAAAG 1374
Query 1366 TACAAAGTCAGAAAGAGACACTTAAACCATCTTTAGTGAAGCACCGGGAGGCAACTAAAA 1425
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1375 TACAAATTCAGAAAGAGACACTTAAACCATCTTTAGTGAAGCACCGGGAGGCAACTAAAG 1434
Query 1426 GCTCTGAAGACATGGAAA-ATTGTAAAAGTGTAAACGAAGATGTTGATGCTAATGTTAAC 1484
|||||||||| ||||||| || |||||| ||||||||| |||||||||||||||||||
Sbjct 1435 GCTCTGAAGATATGGAAACGTT-TAAAAGCGTAAACGAAAATGTTGATGCTAATGTTAAT 1493
Query 1485 GAGgatggagatgatgaaaatctggatgacgaagatgatgaagaagatgaagaagaagaa 1544
||||||||||| |||||||| |||||||||| | | ||| ||||||||||||||||||
Sbjct 1494 GAGGATGGAGAAGATGAAAACCTGGATGACG-A-A-GAT---GAAGATGAAGAAGAAGAA 1547
Query 1545 gaagaagTCGATATGGCTGCAGGAGACAATGAGATATCTCTCGGTTCCCATGGATATCTT 1604
|||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 1548 GAAGAACTCGATATGGCTGCAGGAGACAATGAGATATCTCTTGATTCCCATGGATATCTT 1607
Query 1605 GATACTGAGAACAGCTCCAGGACGTATCTGCAAGGCTTGTTCGATAGTTTTCCAACCAGT 1664
|||||||||||||||||||||||||| || ||||||||||| |||||||||||| | |||
Sbjct 1608 GATACTGAGAACAGCTCCAGGACGTACCTTCAAGGCTTGTTTGATAGTTTTCCATCGAGT 1667
Query 1665 GAACCTGGTTTATATGGAGACTTTGCTGTTGATGATGGGAGTGATGGAGAGTTTCAGATA 1724
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1668 GAACCTAATTTATATGGAGACTTTGCTGTTGATGATGGGAGTGATGGAGAGTTTCAGATA 1727
Query 1725 TACGAGGAAGAATCTGAGGGATTGTATTCCATtgatgatgatcataatgatgacgacgac 1784
||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||
Sbjct 1728 TACGAGGAAGAATCTGAGGGATTGTATTCCATTGATGATGACCACAATGATGACGATGAA 1787
Query 1785 gatgatgatgactgatg 1801
|| || ||||| |||||
Sbjct 1788 GAAGAGGATGA-TGATG 1803
> AT5G24450.1 | Symbols: | Transcription factor IIIC, subunit
5 | chr5:8348242-8353303 FORWARD LENGTH=2003
Length=2003
Score = 1230 bits (666), Expect = 0.0
Identities = 1147/1370 (84%), Gaps = 70/1370 (5%)
Strand=Plus/Plus
Query 67 AACTTTGGGAAGAAACAATGGGAATCATAGAAGAA-GGAACAATCTCAGGTACCTTGCCA 125
||| |||| ||||||||||||||||||| ||| || ||||| ||||| |||| ||||||
Sbjct 150 AAC-TTGGAAAGAAACAATGGGAATCATTGAA-AACGGAACTATCTCGGGTAACTTGCCT 207
Query 126 AGCAAGGAGGCGTTTGTAGTACACT-TCCCTGGTTACCCATCTTCTATTTCCCGAGCCAT 184
||||||||||||||||| || |||| | ||||| || ||||| ||||||||||||||| |
Sbjct 208 AGCAAGGAGGCGTTTGTGGTTCACTAT-CCTGGCTATCCATCATCTATTTCCCGAGCCGT 266
Query 185 TGAAACACTTGGAGGTATCCAAGGAATTTCACAA--GCAAGGGAATCAATTTCAAATAAG 242
|| || || || || |||||||||| |||||| ||||| ||||||| ||||| |||
Sbjct 267 GGAGACTCTCGGGGGAATCCAAGGAA--TCACAACCGCAAGAGAATCAACGTCAAACAAG 324
Query 243 CTTGAGCTGCGTTTCCGGCCTGAAGATCCTTATGCACATCCTGCAT-TGGGTGAACAACG 301
|||||||||| |||||| |||||||| |||| |||||||||||| | | || |||| |||
Sbjct 325 CTTGAGCTGCATTTCCGCCCTGAAGACCCTTCTGCACATCCTGCCTAT-GGAGAACGACG 383
Query 302 TCCTTGCT-GTGGTTTTTTGTTAAGAATTTCTAAGCAGGATATCAAG-AA-A-------C 351
|| ||| | ||||||| |||||| |||||| ||| ||||| | ||| || | |
Sbjct 384 TCATTG-TAATGGTTTTCTGTTAAAAATTTCGAAGGAGGATGTTAAGAAAGATTCTCTGC 442
Query 352 CTGAAAGTCAGCCTGTTCTTGCCACTAGTAGTGATGTATGTTTA-GAGGAAGCT-AGTAC 409
|||||||||| |||||| || |||| ||| |||| ||| ||| | |||| | | |
Sbjct 443 CTGAAAGTCAACCTGTTATTTCCAC---TAGCGATGCATGCTTACCA-GAAG-TGCGCCC 497
Query 410 AGTTCTATGTGCAGATATCATAGCTCGTGTGTCTGAATCGT-TTCACTTTGATGGCATGG 468
|| ||||||||| ||||| ||||||||||||||||||||| || ||||||||||||||
Sbjct 498 AGCTCTATGTGCTGATATTGTAGCTCGTGTGTCTGAATCGTATT-GCTTTGATGGCATGG 556
Query 469 CT-GATTATCAGCATGTTATTCCAATTCACGCGGACATTGCGCAGCAGAAAAAGAGAAAG 527
| || || |||||||| ||||| |||||||| || ||||| |||||||| ||||||||
Sbjct 557 -TCGACTACCAGCATGTAATTCCTATTCACGCTGATATTGCACAGCAGAAGAAGAGAAAA 615
Query 528 TGGATGGATGTTG-ATTCCCTTACAGGAAACAGTGATTTGATGGGCCTGGCTGATGAAGA 586
|||||||| | || | || ||| ||||||| | |||| | |||| | |||||||||||||
Sbjct 616 TGGATGGA-GGTGAAGTCGCTTGCAGGAAAAAATGATCTAATGGACATGGCTGATGAAGA 674
Query 587 TGTGATGATGTTATTGCCACAGTTCTTTGCACCCAAAGATATACCAGACAATGTGGCGTT 646
||| |||||||||||||||||||||||| |||||||||||| |||||||| ||| | |
Sbjct 675 TGTAATGATGTTATTGCCACAGTTCTTTTCACCCAAAGATAGGCCAGACAACCTGGTGCT 734
Query 647 GAAACCTCCGGCAACATCTGGTCCTAAAAAGAAAGATGATGCG-GC-AACTCAGAACT-T 703
|| || ||| | |||||| | || |||||||||||||| | | | ||||||||| | |
Sbjct 735 GAGACTTCCAGTAACATCAAGCCCAAAAAAGAAAGATGA-G-GAACTAACTCAGAA-TCT 791
Query 704 TTATGAGATTGATGTTGGCCCAGTATTTGCAATTGA---T--T-TC--AG-TATCCCAAA 754
||||||||| ||| |||||||||||||||||||||| | | || || ||||||||
Sbjct 792 TTATGAGATAGATATTGGCCCAGTATTTGCAATTGATTTTAGTGTCAAAGAGATCCCAAA 851
Query 755 GAAACTGAAGTGGGAAGACT-T-T-GTTTCTCGCAGCTCCAACCACTGGCAATGGCAGGT 811
|| | | || |||||||||| | | | ||| | || ||||||||| ||| ||||||||||
Sbjct 852 GATATTAAAATGGGAAGACTATATCG-TTC-C-CACCTCCAACCAATGGAAATGGCAGGT 908
Query 812 ATCAGTGTCTGCATTGTTTGAGGAGCGGCCTATATGGACAAGGGATTCTGTAGTTCAACG 871
| ||||||||||||||||||| ||||| ||| | |||||||| ||||| |||| |||||
Sbjct 909 AGCAGTGTCTGCATTGTTTGAAGAGCGACCTGTGTGGACAAGAGATTCCATAGTCCAACG 968
Query 872 ACTACTTGATAAAGGTCTTAAATGTACACATCATATGTTAAACAGGTTTCTGCTCAGGGC 931
|||||| ||||||||||||| ||| |||||||||||||||||||||||||| || |||||
Sbjct 969 ACTACTCGATAAAGGTCTTACATGCACACATCATATGTTAAACAGGTTTCTTCTTAGGGC 1028
Query 932 TGCGTATTATTTCTCCAGTGGTCCGTTTCTTAGGTTCTGGATTAAAAGAGGCTATGATCC 991
||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1029 TGCATATTATTTCTCGGGTGGTCCATTTCTTAGGTTCTGGATTAAAAGAGGCTATGATCC 1088
Query 992 ACGGAATGATCCTGCGTCTCGTGTATATC-AGAGAATGGAATTCAGGGTTCCTCCTGAAT 1050
|||||| ||||||| |||||||||| || |||||||||||||||||||||| |||||||
Sbjct 1089 ACGGAAAGATCCTGAATCTCGTGTAT-TCCAGAGAATGGAATTCAGGGTTCCACCTGAAT 1147
Query 1051 TAC-GGAGTTATTGTGATGCCAATGCAACTAACA-GCTCAAAGCCAAGCTGGAACGACAT 1108
|| || ||||||||||| ||||||||||||||| | ||||||||||||||| | |||||
Sbjct 1148 TAAAGG-GTTATTGTGATTCCAATGCAACTAACAAG-TCAAAGCCAAGCTGGGATGACAT 1205
Query 1109 TTGTGCTTTTAA-GTTATTTCCTTTCAAATGCCAAACGTTTCTGCAGTTGTTTGAACTTG 1167
|||||| ||||| || ||||||||||||||||||||| ||||| ||||| ||||||||||
Sbjct 1206 TTGTGCGTTTAAAGT-ATTTCCTTTCAAATGCCAAACATTTCTACAGTTATTTGAACTTG 1264
Query 1168 ACGACGAGTACATCCAGCGAGAGATAAGAAAGCCTCCCAAGCAAACTACTTGTAGCCATA 1227
|||| |||||||| || | |||||||||||||||||||||||| |||||||||| |||
Sbjct 1265 ACGATGAGTACATTCAACAAGAGATAAGAAAGCCTCCCAAGCAGACTACTTGTAATTATA 1324
Query 1228 AATCAGGATGGTTTTCTGAAGCTCTGCTTGATACTTTGAGACTCCGTGTAGCTGTGAGGT 1287
|| |||||||||| |||||||| |||||||| | ||||||||||||||||||||||||||
Sbjct 1325 AAACAGGATGGTTCTCTGAAGCGCTGCTTGACAATTTGAGACTCCGTGTAGCTGTGAGGT 1384
Query 1288 TTGTGTCTGTCTTCCCTGAGCCAGGTTTCGAAGATGTATTTAAATCCATTCAAGAAGAAT 1347
|||| ||||| || |||||||||||||||||||| || |||||||| ||||||||||| |
Sbjct 1385 TTGTATCTGTGTTTCCTGAGCCAGGTTTCGAAGACGTTTTTAAATCTATTCAAGAAGAGT 1444
Query 1348 TTGAGAGGTCAGAAAAAGTACAA--AGTCAGAAAGA-GACACTTAAACCA 1394
|||||||||| ||||| | ||| | ||||||||| | |||| |||||
Sbjct 1445 TTGAGAGGTCTGAAAA-G-ACACGTATTCAGAAAGATG-CACTGCAACCA 1491
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93172211520
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5