BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485305
Length=897
Score E
Sequences producing significant alignments: (Bits) Value
AT3G49480.1 | Symbols: | Protein with RNI-like/FBD-like domain... 922 0.0
> AT3G49480.1 | Symbols: | Protein with RNI-like/FBD-like domains
| chr3:18342544-18343473 REVERSE LENGTH=930
Length=930
Score = 922 bits (499), Expect = 0.0
Identities = 802/938 (86%), Gaps = 61/938 (7%)
Strand=Plus/Plus
Query 1 ATGCCTAAGAGCCTTTACTTTTGCAAAACGCTTGAGAGATTGACTCTCTCCTACAAGGTT 60
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 1 ATGCCTAAGAGCTTTTACTTTTGCAAAACGCTTGAGAGATTGACTCTCTCCGACAAGATT 60
Query 61 CTTGTGGATGTTCCTCGACAAGTCTCTCTCCCATCACTCACAGAACTTGATCTCTTCTGT 120
||||||||||||||| | |||||||||||||||||||| | |||||||||||||||||||
Sbjct 61 CTTGTGGATGTTCCTTGTCAAGTCTCTCTCCCATCACTTAGAGAACTTGATCTCTTCTGT 120
Query 121 GTTGTGTACAAAGACGAAGATTCTCATGTTAGGCTTTTATCAAGTTGTCCCGTTCTCAAG 180
||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 121 GTTGTGTACAAAGACGAAGATTCTCATGTTAAGCTTCTATCAAGTTGTCCCGTTCTCAAG 180
Query 181 CGTCTAAAGGTGACTCGAAATAGACATGTGGAAGATATTGTGAGAACGTTTAGTGTTAAA 240
| ||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||| ||
Sbjct 181 CATCTAAAGGTGACTCGAAATAGACGTGTGGAAGATAATGTGAGAACGTTTAGGGTTGAA 240
Query 241 GTGCCTTCTTTATTGAGATTAGATTACAAAGTAGATACGACATTTC-A-A-GACAGTGAT 297
||||||||||||||||||||||| ||||||| || || || |||| | | |||||||||
Sbjct 241 GTGCCTTCTTTATTGAGATTAGACTACAAAGCAGGTATGATGTTTCGAGAAGACAGTGAT 300
Query 298 --GA-TAGAT---TTTT-GGTTATAGACACTCCAAATTTATTGTCTCTTCACATCTTTGA 350
| | ||| |||| ||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 301 ATGTCT-GATCCGTTTTTGGTTACAGACACTCCGAATTTATTGTCTCTTCACATCTTTGA 359
Query 351 TATTTTTGGACACTCTTTCTCAGTT-GAGTACATGCCCCATCTTGTTACAGTAGTTATTG 409
|| | | ||| ||||| |||||||| | |||||||||||||||||| |||||||||| ||
Sbjct 360 TACTGTGGGATACTCTCTCTCAGTTTG-GTACATGCCCCATCTTGTCACAGTAGTTACTG 418
Query 410 ATCTGCTCTTCCCTATTGAAAACTTTATGAGGTCTCTCTCTTCGGTCAAGTATCTTGCGT 469
|| ||| ||||||| |||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 419 ATGAGCTGTTCCCTAGTGAAAAATTTATGAGGCCTCTCTCTTCGGTCAAGTATCTTGCGC 478
Query 470 TATCTCCGTTCGATATAATGGTTCCATGGTGTGACGCAGTAAATAACTACTCTCGACTTA 529
||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 479 TATCTCCGTTCGATACAATGGTTCCGTGGTGTGACGCAGTTAATAACTACTCTCGACTTG 538
Query 530 CTTG--TGT--GA-A--TC-A-CTT--T-TGG-TT-TTGC--TCTCTAAT--T---G-T- 566
||| ||| || | || | || | || || ||| || || | | | |
Sbjct 539 -TTGAATGTATGATACATCTATCTGAGTATGACTTGTTGGAATCACTTTTGGTTTTGCTC 597
Query 567 TCTAA-TCTT--AA----AA-GTTTTTATGGTCGACTCTGAGATTG-GTCAGTATGCGAA 617
||||| | || || || |||||| |||||||||| || ||| | || ||| |||
Sbjct 598 TCTAAGTGTTCTAAGCTTAAAGTTTTTCTGGTCGACTCCGACATTCCG--AG-ATG-GAA 653
Query 618 TCATGGTCCAGGTTTATGGAATCAACCGAGTTCTGTTCCAGGATGTTTGTCGTCTCATCT 677
||||| |||| |||||||||||||||||||||| ||||| ||||||||||||| |||||
Sbjct 654 TCATGACCCAGCTTTATGGAATCAACCGAGTTCTATTCCAAGATGTTTGTCGTCGCATCT 713
Query 678 CGAGATCTTTGAGTGGGAAGGATATGCAGGAAGAAAATATGAGAAAGAACTCATAAGATA 737
|||||||||||||||||| ||||||| |||||| || |||||||| || ||||||| ||
Sbjct 714 CGAGATCTTTGAGTGGGACGGATATGTTGGAAGAGAAGATGAGAAAAAAATCATAAGGTA 773
Query 738 CATTCTAGAAAACTCCAAGTGTTTAAAAACAGTGGGAATCTCGCCGAATTCAACATGCAG 797
|||||||||||||||||| | ||||||||||| ||||||||| ||||||||||| | |||
Sbjct 774 CATTCTAGAAAACTCCAAATATTTAAAAACAGCGGGAATCTCACCGAATTCAACCTTCAG 833
Query 798 TG---AAGAGAAACAGAAGATGGTGGTTGAGGAGTTAGAATCTATGCATAG-AGTTCCAA 853
|| |||||||||||||||||| ||||||||||||| |||||||| | | ||||
Sbjct 834 TGGTGAAGAGAAACAGAAGATGG------AGGAGTTAGAATCAATGCATAGGACT-CCAA 886
Query 854 CGTCTGTGCTTCTGTCCTCTGCTCGAATGTTATTTAGA 891
|||||||||||||||||||||||||||||| |||||||
Sbjct 887 CGTCTGTGCTTCTGTCCTCTGCTCGAATGTCATTTAGA 924
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43804176184
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5