BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485310
Length=672
Score E
Sequences producing significant alignments: (Bits) Value
AT3G49540.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1053 0.0
> AT3G49540.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: N-terminal protein myristoylation;
LOCATED IN: cellular_component unknown; Has 9244
Blast hits to 5308 proteins in 962 species: Archae - 18; Bacteria
- 2665; Metazoa - 1953; Fungi - 964; Plants - 333; Viruses
- 74; Other Eukaryotes - 3237 (source: NCBI BLink). |
chr3:18365678-18366565 FORWARD LENGTH=785
Length=785
Score = 1053 bits (570), Expect = 0.0
Identities = 642/675 (95%), Gaps = 11/675 (2%)
Strand=Plus/Plus
Query 1 ATAATAATGGGTGGCTGTGCGAGTAGACCCAAGGAATCAGACATG-AACAACGAAGAAGG 59
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 117 ATAATAATGGGTGGCTGTGCGAGTAGACCCAAGGAATCAGACATGCAA-AACGAAGAAGG 175
Query 60 CTCTGTTCCTAACAAGCCTGTGTCTGAAACCGTAGTAGCCAAGGAGAACAACACAGAAAG 119
||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 176 CTCTGTTCCTAACAAGCCTGTCTCTGAAAACGTAGTAGCCAAGGAGAACAACACAGAAAG 235
Query 120 CGGTGAGAAACAGAACCAGACAGTGGCTGAGACCACTGAAACAACTTCTGTCGAAGCTAA 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 236 CGGTGAGAAACAGAACCAGACAGTGGCTGAGACCACTGAAACAACTTCTGTCGAAGCTAA 295
Query 180 GGAGACATCTCCGGTCGAGCCGACCAAGGAAACCACTCCTGCTGTTCAACCAGAGGTTGC 239
|||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 296 GGAGACATTTCCGGTCGAGCCGACCAAGGAAACAACTCCTGCTGTTCAACCAGAGGTTGC 355
Query 240 AGCCGTCGAAGAGTCTTCTTCTGCTGCTGCTGGTGAGGCTGCAGAAGCCGCACCTGAGAA 299
|||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||
Sbjct 356 AGCCGTCGAAGAGTCTTCTTCTGCTGATGCTGGTGAGGCTGCAGTAGTTGCACCTGAGAA 415
Query 300 AGTGGAGAAGGCTGCAACAGAAAACGTTGAAGCAAAGGTGGATGCGGTTGCAGTAGCTGT 359
||||||||| |||||||||||||||| ||||||||||||||| |||||||| |||||||
Sbjct 416 AGTGGAGAACGCTGCAACAGAAAACGCTGAAGCAAAGGTGGAGGCGGTTGCCGTAGCTGC 475
Query 360 ACCTGAAAAGGTTGAGGTTGCGGTGGAAGCGGAGAAAAAGGCTGAAACTGAACCAGTAAA 419
||| ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 476 ACCCGAAAAGGTTGAGGTTGCAGTGGAAGCGGAGAAAAAGGCTGAAGCTGAACCAGTAAA 535
Query 420 GGCTGAGGCTGAACCAGTAAAGACC-GAGGCTGGACCAGTAAAGGAGGAGAGTAAAAAAG 478
||||||||||||||||||||| | | ||||||| |||||||||||||||||||||| |||
Sbjct 536 GGCTGAGGCTGAACCAGTAAA-AGCTGAGGCTGAACCAGTAAAGGAGGAGAGTAAACAAG 594
Query 479 AAGAGAAAGAAGCTGTTGTCACCGTTTGATGATTAATTAAATTTGTGAAAGTATTTTGAA 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 595 AAGAGAAAGAAGCTGTTGTCACCGTTTGATGATTAATTAAATTTGTGAAAGTATTTTGAA 654
Query 539 TGTTGTTGTATGTCACCTTGATTTGATTTGATTTGCTACTACCAGATTGGTTTGGCTTT- 597
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 655 TGTTGTTGTATGTCACCTTG----G-TTTGATTTGCTACTACCAGATTGGTTTGGCTTTT 709
Query 598 GTTTGTTCTTTGTATCTCAAAATGATTCTTCTTTGATTCAATTAAATATAAATCAGTTTT 657
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 710 GTT-GTTCTTTGTATCTCAAAATGATTCTTCTTTGATTCAATTAAATATAAATCAGTTTT 768
Query 658 GCTTCTTGAAACTTT 672
|| || ||||| |||
Sbjct 769 GCATCGTGAAAATTT 783
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32501493109
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5