BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg485311

Length=441
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G49550.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   628    1e-179


> AT3G49550.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT5G24610.1); Has 
55 Blast hits to 55 proteins in 14 species: Archae - 0; Bacteria 
- 0; Metazoa - 0; Fungi - 0; Plants - 55; Viruses - 0; 
Other Eukaryotes - 0 (source: NCBI BLink). | chr3:18367909-18368900 
FORWARD LENGTH=817
Length=817

 Score =  628 bits (340),  Expect = 1e-179
 Identities = 416/450 (92%), Gaps = 15/450 (3%)
 Strand=Plus/Plus

Query  1    ATGGAGGTATTTGGAAAATCTCATGT-G--GTTGGCTCTGCTAATGTTATTTACTTGTCT  57
            |||||||||||||||||||||||||| |  |||||||||||||||||||||||||| |||
Sbjct  118  ATGGAGGTATTTGGAAAATCTCATGTGGTTGTTGGCTCTGCTAATGTTATTTACTTATCT  177

Query  58   GCTCTATTGGGTCGCGATGGACCCAATCCGTGTCACAAATGTGATTGGAAATGCGAGAAT  117
            ||| ||||||||| ||| ||||||||      ||||||||||||||||||||||||||||
Sbjct  178  GCTATATTGGGTCACGAAGGACCCAA------TCACAAATGTGATTGGAAATGCGAGAAT  231

Query  118  GAGAATGTTTGTGGGAATATGTACCGTTGCAAACTAACTGGGTTGACTCACGTCTGTGAC  177
            |||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct  232  GAGAATGTGTGTGGGAATATGTACCGTTGCAAACTAACTGGGTTGACTCATGTTTGTGAC  291

Query  178  AAGAACTGCAACCAAAGGATTTTGTATGATAACCATAACTCTTTGTGCCGAGCTAGTGGT  237
            |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct  292  AAGAACTGCAACCAAAGGATTTTGTATGATAATCATAACTCTTTGTGTCGAGCTAGTGGT  351

Query  238  CGGATTTTCCCGCTTTCTTCGGCTGAGGAACAGGCGGTTAAAGGAGTTCGGAGGAAGCTT  297
            ||||||||||||||||||| || ||||||||||||||||||||||||  |||||||||||
Sbjct  352  CGGATTTTCCCGCTTTCTTTGGTTGAGGAACAGGCGGTTAAAGGAGTGAGGAGGAAGCTT  411

Query  298  GATGATGAGAGTCAACAAC--CC-TCTGAAAGCTGTGTTAAGCGTCGTCGACGTGATGCT  354
            |||||||||||||||||||  || |||||||| |||||||||||||||||||||||||||
Sbjct  412  GATGATGAGAGTCAACAACAACCTTCTGAAAGTTGTGTTAAGCGTCGTCGACGTGATGCT  471

Query  355  CAGTTTCATTCTTCTCCTTTCGAGAGGTCTTTTGCTGCTGTGAGCCCAATTTGCAGCCAA  414
            |||||||||||||||||||| ||||||||||||||||||||||| ||  |||||||||||
Sbjct  472  CAGTTTCATTCTTCTCCTTTTGAGAGGTCTTTTGCTGCTGTGAGTCCTTTTTGCAGCCAA  531

Query  415  GCTGG---AGATGGAATGGAGATGAACTAG  441
            |||||   ||||||||||||||| ||||||
Sbjct  532  GCTGGTGGAGATGGAATGGAGATTAACTAG  561



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20961651333


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5