BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485312
Length=1153
Score E
Sequences producing significant alignments: (Bits) Value
AT3G49560.1 | Symbols: | Mitochondrial import inner membrane t... 1650 0.0
> AT3G49560.1 | Symbols: | Mitochondrial import inner membrane
translocase subunit Tim17/Tim22/Tim23 family protein | chr3:18370564-18372139
FORWARD LENGTH=1184
Length=1184
Score = 1650 bits (893), Expect = 0.0
Identities = 1073/1158 (93%), Gaps = 20/1158 (2%)
Strand=Plus/Plus
Query 1 AGAGATAAGACTGAGAAGCAGAGAACCGaaagaagaaaaaaaacaaaactcaaagtcgca 60
||||||||||||||||||||||||||||||||||| |||| || || ||| ||||||||
Sbjct 1 AGAGATAAGACTGAGAAGCAGAGAACCGAAAGAAG-AAAACAA-AACTCTCGAAGTCGCA 58
Query 61 acagaaaaaaaaaaaaaaGGACGAGATATGGTGGTA---GGCGGAGGAGGAGGAGGTCAG 117
|||| |||| ||| | || |||||||||||||| |||||||||| ||||| ||||
Sbjct 59 ACAG---AAAAGAAACGA-GA-GAGATATGGTGGTAGGCGGCGGAGGAGAAGGAGATCAG 113
Query 118 AAGAGAAGCGGCGGAGAAATGATGGCGATGGCGAGTTTGTTCAACGATCAGCAGAATCCA 177
||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 114 AAGAGAAGCAGCGGAGAAATGATGGCGATGGCGAGTTTATTCAACGATCAGCAGAATCCA 173
Query 178 ATTCAACAATTTCAGGTTAAATTCAAAGAAGTAGAAACTAATTTCAAGACGTGGTTATCG 237
|||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 174 ATTCAACAGTTTCAGGTTAAATTCAAAGAAGTAGAAACTAATTTCAAGACATGGTTGTCG 233
Query 238 AAACAGTCGATTCCGGTGGAAGCCGCCGTCGTCTCCACCATGAGCGGTGTACAAGGAGCT 297
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 234 AAACAGTCGATTCCGGTGGAAGCCGCCGTCGTATCCACCATGAGCGGTGTACAAGGAGCT 293
Query 298 TTTATTGGTGGTCTCATGGGAACACTCTCTCCTGAAATGCCTCAAGCCGGCGTTGACCCT 357
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 294 TTCATTGGTGGTCTCATGGGAACACTCTCTCCTGAAATGCCTCAAGCCGGCGTTGACCCT 353
Query 358 CAAGCTATAGCCTCGCTGAAACAAGCTCAGGCTCTTGTTGGTGGTCCTTGGGTCCAAGCT 417
||||| ||||| ||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 354 CAAGCCATAGCTTCGATGAAACAAGCTCAGGCTCTTGTGGGTGGTCCTTGGGTCCAAGCT 413
Query 418 CGGAATTTTGCTGCCATTACCGGTGTTAATGCTGGAATTGCTTCAGTAATGAAGCGGATT 477
|||||||||||||| ||||| ||||| ||||||||||||||||| || ||||||||||||
Sbjct 414 CGGAATTTTGCTGCAATTACTGGTGTGAATGCTGGAATTGCTTCTGTTATGAAGCGGATT 473
Query 478 CGAGGCAAAGAAGATATTGAGTCTGCAGTGGTGGCTGCATTAGGATCTGGATTTGCATAC 537
|||||||||| |||||||| |||||||||||||| || |||||||||||||||||||||
Sbjct 474 AGAGGCAAAGAGGATATTGAATCTGCAGTGGTGGCAGCGTTAGGATCTGGATTTGCATAC 533
Query 538 TCTTTGGTGAGCCAAGGATTGCAAGGACAACCTATGAATGCTATTACCACTGCGGCGGGA 597
|| |||||||||||||||||||||||||||||||||||||| || || ||||| || ||
Sbjct 534 TCATTGGTGAGCCAAGGATTGCAAGGACAACCTATGAATGCAATCACTACTGCTGCTGGT 593
Query 598 TTTGCTGTTTTTCAAGGAGTGTTTTTTAAGTTGGGAGAAAGGTTCTCTAAACCGAGCACT 657
||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||
Sbjct 594 TTTGCTGTTTTTCAAGGAGTGTTTTTTAAATTGGGAGAAAGATTCTCTAAACCGAGTACT 653
Query 658 GAGGATCCGTTTTACACACGAGGAAGGACAATGCTAGTGAAGCTAGGTTTAGAGAAATAC 717
|| ||||| |||| |||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 654 GAAGATCCATTTTTCACAAGAGGAAGGACAATGCTAGTGAAGCTAGGTTTGGAGAAATAC 713
Query 718 GAGAAGAACTTCAAGAAAGGACTTTTAACTGATCCCACATTGCCATTGCTCACTGATAGC 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 714 GAGAAGAACTTCAAGAAAGGACTTTTAACTGATCCCACATTGCCATTGCTCACTGATAGC 773
Query 778 GCGCTGAAAGATGCGAACATCCCACCAGGGCCAAGACTTATGATACTAGACCATATCCAG 837
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 774 GCGCTGAAAGATGCGAACATCCCACCAGGGCCAAGACTTATGATACTAGATCATATCCAG 833
Query 838 AGGGACCCGGAGATAAAGGGCAAACGAAAGTAG-AGCCTTGTTGTTTATATGCAA-TCTG 895
||||||||||||||||||||||||||||||||| |||| ||||||||| || ||| | ||
Sbjct 834 AGGGACCCGGAGATAAAGGGCAAACGAAAGTAGGAGCCATGTTGTTTA-AT-CAAATATG 891
Query 896 TTTTGATGGTCACGATCTTCAAACACATATGTAATGCCTTTTACTTTTAGCTGCTATTGC 955
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 892 TTTTGATGGTAACGATCTTCAAACACATATGTAATGCCTTTTACTTTTAGCTGCTATTGC 951
Query 956 CTGCAGGAAGAACTCTTGTTAGATTCTTCTGTTTCTATTAGCAATGTTTGATTCTCTTTT 1015
| | ||||| |||||||||||| ||||||||||||||| |||||||||||| |||||
Sbjct 952 C---ATGAAGAGCTCTTGTTAGATACTTCTGTTTCTATTACCAATGTTTGATTATCTTTA 1008
Query 1016 AAAATTTATGAATATTTCGTCTCAAATCGAATTGGATTATAGGTTCTGAATAAAACGAAA 1075
|||| | ||| || ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1009 AAAAAAT-TGAGTAGTTCGTCTCAAATCAAATTGGATTATAGGTTCTGAATAAAACGAAA 1067
Query 1076 ATGGATTATGCTTTGTATGAGAATAAGATGATTATATTATGTGTAGAGTTGATTGGCTTA 1135
||| | |||||||||||||||||||||||| ||||||||||| ||| ||||||||||||
Sbjct 1068 ATGAAATATGCTTTGTATGAGAATAAGATGTTTATATTATGTATAG--TTGATTGGCTTA 1125
Query 1136 AGATCAAGATTCGATAAA 1153
||||||||| ||||||||
Sbjct 1126 AGATCAAGACTCGATAAA 1143
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56576014215
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5