BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg485313

Length=408
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G49570.1 | Symbols: LSU3 | response to low sulfur 3 | chr3:1...   536    5e-152


> AT3G49570.1 | Symbols: LSU3 | response to low sulfur 3 | chr3:18372533-18373024 
REVERSE LENGTH=492
Length=492

 Score =  536 bits (290),  Expect = 5e-152
 Identities = 379/420 (90%), Gaps = 13/420 (3%)
 Strand=Plus/Plus

Query  1    TAATGGGGAAAGGAGGAGGTTATGTGACGGTGGCGGCGGAAGAAGTggaggagctacgga  60
            ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  71   TAATGGGAAAAGGAGGAGGTTATGTGACGGTGGCGGCGGAAGAAGTGGAGGAGTTACGGA  130

Query  61   ggagaaacggagagttggagagagaaatggaggtgatgaagaaggagaTGGTTCAGTTGT  120
            |||| |||||||||||||||||||||||||||| ||||||||| |||||||||||| |||
Sbjct  131  GGAGGAACGGAGAGTTGGAGAGAGAAATGGAGGAGATGAAGAAAGAGATGGTTCAGCTGT  190

Query  121  GGCGGCGGGCGGTGGTGGCGGAAGAGGCGGAGGAGAGACTCTGCTCGCAACTGGCGGAGC  180
            |||||||  ||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct  191  GGCGGCGTACGGTGGTGGCGGAGGAGGCCGAGGAGAGACTCTGCTCGCAACTGGCGGAGC  250

Query  181  TTGAGGTCGAATCTCTAGATCAGGCGCGTGACTATCACTCTCGTATAGTCTTTCTCATGG  240
            | |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  251  TAGAGGTCGAGTCTTTAGATCAGGCGCGTGACTATCACTCTCGTATAGTCTTTCTCATGG  310

Query  241  ACCAAAtctctcgtctctcttcttcctctctTGAAGTCGTTGTAACAAATTCTTAGATAG  300
            ||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||
Sbjct  311  ACCAAATCTCTCGTCTCTCTTCTTCCTCTCTTGAAGTCGTTGTTACGAATTCGTAGATAG  370

Query  301  AA-AATTGTTATTTTGTCTTTAGAGCTTTTT--------A-TTGTGAGATCCAAGTAGTT  350
            |  |||| |||||||||||||||   |||||        | ||||| |||||||||||||
Sbjct  371  ATTAATTATTATTTTGTCTTTAGCTTTTTTTTTTTTTTTAATTGTGGGATCCAAGTAGTT  430

Query  351  TAATGT-T-AAAAAGATATGTCAATAAATTCTGCATAAAAGATTACAATTTTTCATTTTC  408
            |||||| | |||||||||||| || ||||| |||||||   ||||||| |||||||||||
Sbjct  431  TAATGTGTTAAAAAGATATGTAAAGAAATTTTGCATAAGT-ATTACAAATTTTCATTTTC  489



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19302815616


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5