BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg485314

Length=423
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G49580.1 | Symbols: LSU1 | response to low sulfur 1 | chr3:1...   564    3e-160


> AT3G49580.1 | Symbols: LSU1 | response to low sulfur 1 | chr3:18375269-18375784 
REVERSE LENGTH=516
Length=516

 Score =  564 bits (305),  Expect = 3e-160
 Identities = 396/437 (91%), Gaps = 17/437 (4%)
 Strand=Plus/Plus

Query  1    TTAATGGCGAACCGAGGAGGGTACGTGACGGTGGCGGCGGAAGAGATGGAGGAGCTAAGG  60
            |||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||
Sbjct  63   TTAATGGCGAACCGAGGAGGATGCGTGACGGTGGCGGCGGAAGAGATGGATGAGCTAAGG  122

Query  61   AGGAGGAACATAGAGCTCTCGAGAGAAGTGGAGGAGATGAAGACAGAAATGATTAAGTTG  120
            ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  123  AGGAGGAACATAGAGCTCTCGAGAGAAGTGGCGGAGATGAAGACAGAAATGATTAAGTTG  182

Query  121  TGGCAACGAACGGTGGTGGCAGAGGAGGCGGAAGAGCGACTCTGCTCGCAGCTAGCGGAG  180
            ||||| |||||||| ||||| |||||||||||||||| ||||||||||||||| ||||||
Sbjct  183  TGGCAGCGAACGGTTGTGGCGGAGGAGGCGGAAGAGCAACTCTGCTCGCAGCTGGCGGAG  242

Query  181  CTGGAGGTCGAGTCTTTAGATCAGGCACGTGACTATCACAATCGCATGCTCTTCCTCATG  240
            |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct  243  CTGGAGGTCGAGTCTTTAGAACAGGCACGTGACTATCACGATCGCATGCTCTTCCTCATG  302

Query  241  GATCAAAtctctcgtctctcttcttcttctctcGCCGCTTCGTCGTAGAATTAA-atata  299
            |||||||||||||||||||||||||||||| ||| | |||| ||||||||| || |||| 
Sbjct  303  GATCAAATCTCTCGTCTCTCTTCTTCTTCTGTCGTCTCTTCCTCGTAGAAT-AAGATATT  361

Query  300  tatcataatttatgtatagttgtgtatgtgt-a--ca-tatac--gt-t-tggtatac-a  350
            | |||||| |||||||||||||||||||||  |  || |||||  || | | | || | |
Sbjct  362  TCTCATAAGTTATGTATAGTTGTGTATGTGACAATCACTATACATGTATATAG-AT-CGA  419

Query  351  tg-ta-tatgTTATGTTTTCAACATAAAGTATATGTT-GAATCAATTTCTAGTGAATAA-  406
            || || |||||||||||||||||||||| || ||||| ||||| ||||||||||||||| 
Sbjct  420  TGGTAATATGTTATGTTTTCAACATAAATTAAATGTTTGAATCCATTTCTAGTGAATAAA  479

Query  407  TTAGTATTTCTGATAAT  423
            |||| ||||||||||||
Sbjct  480  TTAGAATTTCTGATAAT  496



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20056831851


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5