BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485316
Length=2213
Score E
Sequences producing significant alignments: (Bits) Value
AT3G49590.3 | Symbols: | Autophagy-related protein 13 | chr3:1... 2058 0.0
> AT3G49590.3 | Symbols: | Autophagy-related protein 13 | chr3:18377479-18380274
FORWARD LENGTH=2440
Length=2440
Score = 2058 bits (1114), Expect = 0.0
Identities = 1276/1354 (94%), Gaps = 11/1354 (1%)
Strand=Plus/Plus
Query 200 GATATTTTTAGCATTGTTTCGATTTTAGGGATTTGTGTGAAGAACAATGGATTTTCCAGA 259
||||||||||| |||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 370 GATATTTTTAGAATTGTTTCGA-TTTAGGGATTTGTGTGAAGAA-GATGGATTTTCCAGA 427
Query 260 GAATTTGCCATCAGATATAGGAAGATTAGAGCAGATTGTTTCTCATTTCTTCCCAAAAGC 319
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 428 GAATTTGCCTTCAGATATAGGAAGATTAGAGCAGATTGTTTCTCATTTCTTCCCAAAAGC 487
Query 320 ATTACACATAGTTCTTAATTCCAGAATCCCTTCGTTGCAATCTCGTGCTCGTAGTCGTGA 379
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 488 ATTACACATAGTTCTTAATTCCAGAATCCCTTCGTTGCAATCTCGTGGTCGTACTCGTGA 547
Query 380 GCGTTTATCATCAGGTCTTAATGTTAGAAAAAGCGATAAATGGTTTAATCTTGTGATGGG 439
|||||||||| |||||||| ||||||||||| || |||||||||||||||||||||||
Sbjct 548 GCGTTTATCA---GGTCTTAACGTTAGAAAAAGTGACAAATGGTTTAATCTTGTGATGGG 604
Query 440 AGATCGTCCTCCTGCGTTGGAGAAATTGCATTCTTGGCACAGGAATATTTTGGATTCTAT 499
|||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 605 AGATCGTCCTGCTGCGTTGGAGAAATTGCATTCTTGGCATAGGAATATTCTGGATTCTAT 664
Query 500 GATTATTGATATCATTCTTGTTCATCCGATTTCAACCGATAATTTGGATGTTGATGATGA 559
||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||
Sbjct 665 GATTATTGATATCATTCTTGTCCATCCGATTTCAAACGATAATTTGGATGATGATGATGA 724
Query 560 TCATCATGGTGATTCTACTGTTAGATCAGCTGAGACTGTGATTGAGCGTTGGGTTGTTCA 619
|||| | | ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 725 TCAT-A-G-TGATTCTGTTGTTAGATCAGCTGAGACTGTGATTGAGCGTTGGGTTGTTCA 781
Query 620 GTATGAGAATCCTTTGATTATGTCTCCTCTGAGTTCTGAGTCTGCTACCCGTTATCAGAA 679
|||||||||||||||||||||||||||| ||||||||| ||||| || ||||| |||||
Sbjct 782 ATATGAGAATCCTTTGATTATGTCTCCTCAGAGTTCTGACTCTGCAACGCGTTACCAGAA 841
Query 680 GGTTTACAAGAAATCTATCATTCTGTTGCGGTCTCTTTATGCGCAGACTCGGCTTCTTCC 739
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 842 GGTTTACAAGAAATCTATCATTCTGTTGCGGTCTCTTTATGCACAGACTCGGCTTCTTCC 901
Query 740 TGCTTATCGTGTTTCTAGGCAGCTGAGTTCGTCTCTTGCTTCTTCTGGTTATGATTTGAT 799
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 902 TGCTTATCGTGTCTCTAGGCAGCTGAGTTCTTCTCTTGCTTCTTCTGGTTATGATTTGAT 961
Query 800 CTACAAGATTTCATCTTTCAGTGATATATTCTCTGGTCCTGTGACGGAAACAATGAAAGA 859
|||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 962 TTACAAGGTTTCATCTTTCAGTGACATATTCTCTGGTCCTGTGACGGAAACAATGAAAGA 1021
Query 860 GTTTCGTTTTGCTCCAGTTAAAGTACCTCCTGGTCGTCTTTGTGCATCGGTTACTTACCG 919
||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 1022 GTTTCGTTTTGCTCCTGTTGAAGTGCCTCCTGGTCGTCTTTGTGCATCGGTTACTTACCG 1081
Query 920 TTCTGACTTATCTGATTTCAATCTCGGTGCTCATATCACATTGCCTCCGAGAATCATCAC 979
|||||||||||||||||| |||||||||||||||||||||||||||||||| || || ||
Sbjct 1082 TTCTGACTTATCTGATTTTAATCTCGGTGCTCATATCACATTGCCTCCGAGGATTATAAC 1141
Query 980 TGATTATGTAGGAAGTCCTGCAACTGATCCTATGAGGTTTTTCCCTTCTCCAGGGAAAAG 1039
||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 1142 TGATTATGTGGGAAGTCCTGCAACAGATCCTATGAGGTTTTTCCCTTCTCCAGGGAGAAG 1201
Query 1040 TATTGAAGGAAATTCCTTTATTGGTAGAGCTGGTCGGCCTCCATTGACTGGTTCATCTGC 1099
| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1202 TGTTGAAGGCCATTCCTTTACTGGTAGAGCTGGTCGGCCTCCATTGACTGGTTCATCTGC 1261
Query 1100 TGAACGTCCGCATAGCTGGACTAGCGGCTTTCACAGACCTCCAGCTCAGTACCCAACACC 1159
||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||
Sbjct 1262 AGAACGTCCGCATAGCTGGACTAGCGGCTTTCACAGACCTCCAGCTCAATTCGCAACACC 1321
Query 1160 TAACCAATCTTTTTCTCCTGCTCATTCCCATCAATTTTCACCCGGGTTACATGATTTCCA 1219
|||||||||||||| || ||||| || ||||| || ||||| |||||||| ||||||||
Sbjct 1322 GAACCAATCTTTTTCGCCAGCTCAGTCTCATCAGTTGTCACCTGGGTTACACGATTTCCA 1381
Query 1220 CTGGTCACGTACAGATGCATTTGGTGACAATCACCAGCTTTCACCTCCTTTTTCGCCATC 1279
|||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||
Sbjct 1382 CTGGTCACGTACAGATGCTTTTGGTGACAATCACCAGCTTTCACCTCCCTTTTCACCATC 1441
Query 1280 GGGTTCTCCGTCTACTCCAAGATACATATCTGGGGGTAACAGTCCGCGCATTAATGTGAG 1339
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1442 GGGTTCTCCATCTACTCCAAGATACATATCTGGGGGTAACAGTCCGCGCATTAATGTGAG 1501
Query 1340 ACCAGGGACTGCTCCAGTGACCATTCCTTCGTCAGCCACATTCAATAGATACGTTTCATC 1399
|||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||
Sbjct 1502 ACCAGGGACTGCTCCAGTGACCATTCCTTCTTCAGCCACGTTAAATAGATACGTTTCATC 1561
Query 1400 TAATTTCTCTGAGCCAGGTAGGAATCCACTTCCTCCTTTTTCCCCGAAAAGCGCAAGACG 1459
||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 1562 TAACTTCTCTGAGCCAGGTAGGAATCCACTTCCTCCTTTTTCCCCCAAAAGCACAAGACG 1621
Query 1460 GTCCCCTTCATCGCAGGACTCTTTGCCTGGGATTGCATTGTACAGGAGTTCTAGAAGCGG 1519
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1622 CTCCCCTTCATCGCAGGACTCTTTGCCTGGGATTGCGTTGTACAGGAGTTCTAGAAGCGG 1681
Query 1520 AGAGTCTCCT---GGATTAATGAACCAGTACCCT 1550
|||||||||| |||||||||||||||||||||
Sbjct 1682 AGAGTCTCCTTCTGGATTAATGAACCAGTACCCT 1715
Score = 1037 bits (561), Expect = 0.0
Identities = 614/640 (96%), Gaps = 1/640 (0%)
Strand=Plus/Plus
Query 1574 CAAATACGATTCAGGCCGCTTCTCAGGAGTTCTGTCTTCGAGTGACTCACCAAGATTCGG 1633
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1784 CAAATACGATTCAGGCCGCTTCTCAGGAGTTCTGTCTTCGAGTGACTCACCAAGATTCGC 1843
Query 1634 GTTTTCTAGGAGCCCCAGTAGATTATCTTCTCAAGACGACTTGGATGACCCTGATTGTTC 1693
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1844 GTTTTCTAGGAGCCCCAGTAGATTATCTTCCCAAGACGACTTGGATGACCCTGATTGTTC 1903
Query 1694 ATGCCCTTTTGATTTCGATGATGTTGACGAGTCAGGACTTCAGTACAGCCAAAGTCTTGA 1753
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 1904 ATGCCCTTTTGATTTCGATGATGTTGATGAGTCAGGACTTCAGTACAGCCATAGTCTTGA 1963
Query 1754 CCGGAGGAAAACTTCAAGCTCTATATCACAGTCGCTACCTCTAGGGAGAAGGTCATCACA 1813
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 1964 CCGGAGGAAAACTTCAAGCTCTATATCGCAGTCGCTACCTCTAGGGAGAAGATCATCACA 2023
Query 1814 GGACGCAGCGGTTGGTGTTCTGGTTCACATGCTGAAGACAGCACCGCCATTACGACAAGA 1873
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2024 GGACGCAGCGGTTGGTGTTCTGGTTCACATGCTGAAGACAGCACCACCATTACGACAAGA 2083
Query 1874 CTCAAGCACTTACATGGCGTCAATGTCTGGGGTTCAGAGAGAAGGTTCAGTGTCAGGTAC 1933
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2084 CTCAAGCACTTATATGGCGTCAATGTCTGGGGTTCAGAGAGAAGGTTCAGTGTCAGGTAC 2143
Query 1934 AGAATCTGAATTTTCGATGGCTCGTAGCACATCAGATGCACTAGAGGAGCTGAGAAACTA 1993
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2144 AGAATCTGAATTTTCGATGGCTCGTAGCACATCAGATGCACTAGAGGAACTGAGAAACTA 2203
Query 1994 CAAACAGCTCAAAGACTTACTTCTTTCCAAATCCAAAAGTGGGTCTGGAGCAACTCGTGT 2053
|||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||| ||
Sbjct 2204 CAAACAGCTCAAAGACTTGCTTCTCTCCAAATCCAAAAGTGGGTCTGGACCAACTCGCGT 2263
Query 2054 CCACTGAGCCAAATCAAAGAGCAAGCAAGATATGAGTTATCGGATGGATGTTTGTATATA 2113
|||||||||||||||||||||| | |||||||||||||||| ||||| |||||||| |||
Sbjct 2264 CCACTGAGCCAAATCAAAGAGCGATCAAGATATGAGTTATCCGATGGTTGTTTGTAGATA 2323
Query 2114 TGGATTTGATGACGAGTACTTAACTCTGTTGTATAAATGCCAAAGAGCAATCACGTTTCA 2173
|| |||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 2324 TGAATTTGATGACGAATACTTAACTCTGTTGTATAT-TGCCAAAGAGCAATCACGTTTTG 2382
Query 2174 GTTTCTGTAAAAGAACTTGCCTCTGAATTTGCACATAAAA 2213
|||||||||||||||||||||| ||||| |||||||||||
Sbjct 2383 GTTTCTGTAAAAGAACTTGCCTTTGAATATGCACATAAAA 2422
Score = 119 bits (64), Expect = 1e-25
Identities = 83/92 (90%), Gaps = 1/92 (1%)
Strand=Plus/Plus
Query 1 AAACTCTTTTTATTTATTAATGTTCATGATCATCATCATCTGCGTGTAAAACACAATCAC 60
||||||||||| |||| | || |||| |||||| |||||||||||||||||||| ||||
Sbjct 82 AAACTCTTTTTGTTTA-TGTTGATCATCATCATCGTCATCTGCGTGTAAAACACACTCAC 140
Query 61 GCCATCGTTGACGTCTCAGATCTTCAAATAAA 92
|||||||||||||||||||||||||| |||||
Sbjct 141 GCCATCGTTGACGTCTCAGATCTTCACATAAA 172
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 109788591915
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5