BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485324
Length=1282
Score E
Sequences producing significant alignments: (Bits) Value
AT3G49660.1 | Symbols: | Transducin/WD40 repeat-like superfami... 1522 0.0
> AT3G49660.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr3:18413613-18415579 FORWARD LENGTH=1387
Length=1387
Score = 1522 bits (824), Expect = 0.0
Identities = 988/1066 (93%), Gaps = 15/1066 (1%)
Strand=Plus/Plus
Query 1 AGACAAAGCCCCCTTTCCAAAAACCCT-AAATCAGCCAAATTCAAA-TCCGCCGAACC-- 56
|||||||||| ||||||| |||||||| |||||||||||||||||| |||| | ||||
Sbjct 14 AGACAAAGCCTCCTTTCCCAAAACCCTAAAATCAGCCAAATTCAAATTCCG-CTAACCAA 72
Query 57 TTTAGCCATGGCAGAGGAAGTTCCAGCAACAGCATCATTTACTCCCTACGTCCACTCCCA 116
||| |||||||||||||| ||||||||||||||||||| ||||| |||||||| || ||
Sbjct 73 TTT--CCATGGCAGAGGAAATTCCAGCAACAGCATCATTCACTCCATACGTCCATTCACA 130
Query 117 AACCCTAACTTCTCACATTCGCGCCGTCTCCTCCGTGAAATTCTCCTCCGATGGCCGTCT 176
||| ||||| ||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 131 AACTCTAACATCTCACAATCGCGCCGTCTCCTCCGTGAAATTCTCCTCCGATGGACGTCT 190
Query 177 CCTCGCATCCGCCTCCGCCGACAAAACCATCCGTACTTACACCGTCAACACCGA-AAACG 235
||||||||||||||||||||||||||| ||||| |||||||| |||||||| | ||||
Sbjct 191 CCTCGCATCCGCCTCCGCCGACAAAACAATCCGCACTTACACAATCAACACC-ATTAACG 249
Query 236 AAACAATCGCCGAGCCCGCACGAGAATTCACCGGCCATGAAAACGGTATCTCCGATGTTG 295
| ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 250 ATCCAATCGCCGAGCCCGTACAAGAATTCACCGGCCATGAAAACGGTATCTCCGATGTTG 309
Query 296 CCTTTTCTTCAGACGCGAGGTTTATAGTCTCAGCTTCCGATGACAAAACCTTAAAGCTAT 355
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 310 CATTCTCTTCAGACGCGAGGTTTATAGTCTCAGCTTCCGATGACAAAACCTTAAAGCTAT 369
Query 356 GGGACGTTGAAACTGGTTCATTGATCAAAACGCTTATCGGACACACTAATTACGCCTTTT 415
|||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |
Sbjct 370 GGGACGTTGAAACTGGTTCATTGATCAAGACGCTTATTGGACACACTAATTACGCCTTCT 429
Query 416 GTGTCAATTTCAATCCTCAATCAAACATGATTGTATCTGGTTCGTTTGATGAAACTGTTC 475
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 430 GTGTCAATTTCAATCCTCAATCAAATATGATTGTATCTGGTTCGTTTGATGAAACTGTTC 489
Query 476 GGATTTGGGATGTTACTACCGGAAAATGTTTGAAAGTTCTTCCCGCGCATTCTGATCCTG 535
|||| |||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 490 GGATCTGGGATGTCACTACTGGAAAGTGTTTGAAAGTTCTTCCCGCGCATTCTGATCCTG 549
Query 536 TTACCGCCGTTGATTTTAATCGAGATGGGTCTCTCATTGTTTCGAGTAGCTATGATGGGT 595
|||| || |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 550 TTACTGCTGTTGATTTTAATAGAGATGGGTCTCTCATTGTTTCGAGTAGCTATGATGGGT 609
Query 596 TGTGTCGTATATGGGATTCTGGGACTGGACATTGTATAAAAACGT-TAATTGATGATGAG 654
|||||||||||||||||||||||||||| |||||| | ||||| | | ||||||||||||
Sbjct 610 TGTGTCGTATATGGGATTCTGGGACTGGTCATTGTGTGAAAAC-TCTGATTGATGATGAG 668
Query 655 AATCCTCCTGTTTCGTTTGTTAGATTCTCTCCCAATGGCAAGTTTATTCTTGTTGGTACA 714
|||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||
Sbjct 669 AATCCTCCTGTTTCGTTTGTTAGATTCTCTCCTAATGGCAAGTTTATCCTCGTTGGTACA 728
Query 715 CTGGATAACACACTGAGGTTGTGGAACATTGCGTCTGCTAAGTTCCTCAAAACATATACG 774
|| |||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 729 CTTGATAACACGCTGAGGTTGTGGAACATTTCGTCTGCTAAGTTCCTCAAAACATACACT 788
Query 775 GGCCATGTGAACGCACAGTATTGCATTTCCTCTGCGTTCTCCGTCACAAATGGAAAGCGG 834
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 789 GGCCACGTGAACGCACAGTATTGCATTTCCTCTGCGTTCTCCGTCACAAATGGAAAGCGA 848
Query 835 ATAGTTAGTGGATCCGAGGACAACTGTGTATACATGTGGGAGTTAAACTCCAGGAAACTG 894
||||| |||||||||||||||||||||||| ||||||||||| ||||||||| |||||||
Sbjct 849 ATAGTCAGTGGATCCGAGGACAACTGTGTACACATGTGGGAGCTAAACTCCAAGAAACTG 908
Query 895 CTTCAGAAACTTGAGGGTCATACTGAGACCGTCATGAACGTGGCATGCCACCCAACAGAG 954
|| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 909 CTACAGAAACTTGAGGGTCATACTGAGACCGTCATGAACGTAGCATGCCACCCGACAGAG 968
Query 955 AACTTGATCGCATCAGGCTCACTCGACAAGTCTGTTAGGATTTGGACACAGAAGAAAGAA 1014
|||||||||||||||||||| ||||||||| | || ||||||||||||||||||||||||
Sbjct 969 AACTTGATCGCATCAGGCTCGCTCGACAAGACAGTAAGGATTTGGACACAGAAGAAAGAA 1028
Query 1015 TGAACCACCActctctctctctctTCAAAAATCATACATGTAGGTA 1060
| || | || || ||||||||||||| |||||| |||||||||||
Sbjct 1029 T-AA--ATCA-TCACTCTCTCTCTTCAGAAATCAAACATGTAGGTA 1070
Score = 211 bits (114), Expect = 1e-53
Identities = 177/203 (87%), Gaps = 22/203 (11%)
Strand=Plus/Plus
Query 1061 GCTTACTAAGCTTGTTAGATTGATTCTAGCCTCATTATGTAAAAGTGC-AATTTTTG--T 1117
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
Sbjct 1104 GCTTACTAAGCTTGTTAGATTGATTCTAGCCTCATTATGTAAAAGT-CTAATTTTTGTTT 1162
Query 1118 --T-T----G--GTGC--GAGACTGTTGTAAACTTGTAGTAGTTCTCTGTGTGACTCAGA 1166
| | | |||| |||||||| |||||||||| |||||||||||||||||||||
Sbjct 1163 GGTGTAAGGGAAGTGCAACAGACTGTTCTAAACTTGTAATAGTTCTCTGTGTGACTCAGA 1222
Query 1167 ACTATTTAGGTAGGTCTTAAGGCAAAGACATTGGAATCCTGCAAGTGCAAAGGCATTTGT 1226
||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 1223 ACTATTTAGGTAGGTCTTAAGGCAAAGAC-T------CCTGCAAGTGCAAAGGCATTTGA 1275
Query 1227 GAGAATGAACACAAATCTTCATA 1249
|||||||||||||||||||||||
Sbjct 1276 GAGAATGAACACAAATCTTCATA 1298
Score = 56.5 bits (30), Expect = 6e-07
Identities = 30/30 (100%), Gaps = 0/30 (0%)
Strand=Plus/Plus
Query 1250 ATTGTATCTATTAAGCTGATGCAATGCTTC 1279
||||||||||||||||||||||||||||||
Sbjct 1315 ATTGTATCTATTAAGCTGATGCAATGCTTC 1344
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63051884520
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5