BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485327
Length=1471
Score E
Sequences producing significant alignments: (Bits) Value
AT3G62080.2 | Symbols: | SNF7 family protein | chr3:22986174-2... 2233 0.0
AT3G62090.2 | Symbols: PIL2, PIF6 | phytochrome interacting fac... 228 1e-58
> AT3G62080.2 | Symbols: | SNF7 family protein | chr3:22986174-22988777
FORWARD LENGTH=1666
Length=1666
Score = 2233 bits (1209), Expect = 0.0
Identities = 1345/1412 (95%), Gaps = 3/1412 (0%)
Strand=Plus/Plus
Query 9 AGTTCCAGATTGGGACGATGAGGTGGTGGCGACGGCCAGATTCAAGGCGTTTAGTGGGCA 68
|||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| ||
Sbjct 173 AGTTCCAGATTGGGACGATGAGGTGGTGGCGATGGCTAGATTCAAGGCGTTTAGTGGTCA 232
Query 69 GAGATCCGATTGGGAACTTAAATTTCAGTTTTGGCGTGATTTGATCCTCAAGGTTTCGCG 128
||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 233 GAGGTCCGATTGGGAACTTAAATTTCAGTTTTGGCGTGATTTGATCATCAAGGTTTCGCG 292
Query 129 TCAGTTTGGGTTGTTCATCATTGATCCTGTTCAGGTGAAGAAGGCGTGGTTTAATCGAGG 188
|||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 293 TCAGTTTGGGTTGTTCATCATTGATCCTGTCCAGGTGAAGAAGGCGTGGTTTGATCGAGG 352
Query 189 AGGAATAACGCCTTTATGCATTGATCATGTTCTGTTATTGATGCATAGTGAAGGTGATGT 248
|||||| |||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 353 AGGAATGACGCCTTTATGCATTGATGATGTTGTGTTATTGATGCATAGTGAAGGTGATGT 412
Query 249 TGTGCGGATTAGCGATCTTGATGAT-CCGAGTATTGGCCGTATTTCTCGTTTATTGAGGA 307
|||||||||||| ||||| |||||| ||| ||| ||| |||||| |||||||||||||||
Sbjct 413 TGTGCGGATTAGTGATCTCGATGATCCCG-GTAGTGGTCGTATTGCTCGTTTATTGAGGA 471
Query 308 CAGTGAGGAACTTGATGGTTCAACAGTCAGTGAAGCAGGAAGAGATTCTGGAAACTAAAC 367
|||||| |||||| |||||||||||| ||||||||||||||||||||||||||| || ||
Sbjct 472 CAGTGAAGAACTTAATGGTTCAACAGCCAGTGAAGCAGGAAGAGATTCTGGAAAATACAC 531
Query 368 TTGTTATTGTACCACTCTTGAAGGAGAAGGCGGGTGATGTGGTTAATATTTTATCTGAGG 427
||||| |||| |||||||||||||||||||||| ||| ||||| || || ||||||||||
Sbjct 532 TTGTTCTTGTTCCACTCTTGAAGGAGAAGGCGGCTGACGTGGTGAAGATATTATCTGAGG 591
Query 428 GACACTGGACTTCTACTTGTGTTGTCACGCTGAAGAAGTTTCAGAATTTGTGCAACGGCT 487
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 592 GACACTGGACTTCTACTTGTGTTGTCACGCTGAAGAAGTTTCGGAATTTGTGCAACGGTT 651
Query 488 CGAATGAGGCATCTGCTGTTTTGAGTCACTTGTCAGGGTGTGGAAAAGCGCATAAAATCT 547
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 652 CGAATGAGGCTTCAGCTGTTTTGAGTCACTTGTCAGGGTGTGGAAAAGCGCATAAAATCT 711
Query 548 CTATCAATCAGGGAGAACTGATCGAGGGCGTTAAAGTATCCTTTTCACAAGCAGCACTTC 607
||||||||| |||||||||||| ||||| ||||| || |||||||||||| |||||||||
Sbjct 712 CTATCAATCGGGGAGAACTGATTGAGGGTGTTAAGGTGTCCTTTTCACAAACAGCACTTC 771
Query 608 CTAGCATCTCAACTTTAGATTGTGATATTCTGCACTTGCTAAGGACTACAGAAAAGCTCC 667
| | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 772 CCGGTATCTCAACTTTAGACTGTGATATTCTGCACTTGCTAAGGACTACAGAAAAGCTCC 831
Query 668 ACGATCAACTTGAAGTGATGGACCAACGTTGTGAAAAGTCAAAGAAATCAGCGCTGGCAT 727
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 832 AAGATCAACTTGAAGTGATGGACCAACGTTGTGAAAAGTCAAAGAAATCAGCGCTGGCAT 891
Query 728 CTCTAAAGTCTGGACACAGGAAAGTTGCTCTAAGGCATGCAAGGGAATTGAAGTTGGCGA 787
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 892 CTCTAAAGTCTGGACACAGGAAAGTTGCTCTAAGGCATGCAAGGGAATTGAAGGTGGTGA 951
Query 788 CTGAGAGCAGAGAAAAATGCACGTCACTTCTGAACAGAGTAGAAGAAGTGTTGAACACTA 847
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 952 CTGAGAGCAGAGAAAAATGCACGTCACTTCTGAACAGAGTAGAAGAAGTGTTGAACACTA 1011
Query 848 TAGCGGATTCTGAATCTACGAAAATGGTCTCAGAAGCAATCAAAACTGGAGCTAGGGTCA 907
|||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1012 TAGCGGATTCCGAATCTACGAAAATGGTCTCAGAAGCAATTAAAACTGGAGCTAGGGTTA 1071
Query 908 TGAAGGACATCAAGATCAGTGCAGATGATGTTCATGACTATTTAGAAGAACTTGAGGAAA 967
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1072 TGAAGGACATCAAGATCAGTGCAGATGATGTTCATGACTATCTAGAAGAACTTGAGGAAA 1131
Query 968 CTATTGAATCACAGAAGCAAGTCGAAAAAGCTCTCGAATCCGCTCCATATCCAGATACTG 1027
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 1132 CTATTGAATCACAGAAGCAAGTCGAAAAAGCTCTCGAATCAGCTCCATATCCAGATATTG 1191
Query 1028 ATGATGAAAATTTCGAAGAAGAATTACTGGAATTAGAGATGGACCTTGAAAGTGAAAGTT 1087
|||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1192 ATGATGAAGATATCGAAGAAGAATTACTGGAACTAGAGATGGACCTTGAAAGTGAAAGTT 1251
Query 1088 CTCAAGTCCTACCAGCGACTTTAGATACTGCAGATTCACTGACTGAGATGTTCTCAGAGC 1147
|||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1252 CTCAGGTCCTACCAGCGACTTCAGATACTGCAGATTCACTGACTGAGATGTTCTCAGAGC 1311
Query 1148 TTAAACTTGGCAAGACGAAACAAACATTGGAAGAGCAAGCTACTGAGCCAGCTCGGATGA 1207
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1312 TTAAACTTGGCAAGACGAAACAAACATTGGAAGAGCAAGCTACTGAGCCAGCTCAGATGA 1371
Query 1208 AAGATAGCGGAAAAAAGATTCTTGAAGCAGCATAGCTGAACAATGCATCTTCATTGTGGT 1267
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1372 AAGATAGCGGAAAAAAGATTCTTGAAGCAGCATAGCTGAACAATGCATCTTCATTGCGGT 1431
Query 1268 GCGATCTCTTCTCTTCTTGTTGTACTTAAGAGAAGAAATACACTCGGTATCATATAGATA 1327
|||||||||||||||| |||||| |||| | |||||||||||||| |||||||||| |||
Sbjct 1432 GCGATCTCTTCTCTTCCTGTTGTTCTTA-GTGAAGAAATACACTCAGTATCATATAAATA 1490
Query 1328 GAATAGAACCGGGTAAAGTGAGTTGAGTATTTGTATGCTATGCCTCTTGTTCGGATTCTA 1387
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1491 GAATAGAACCGGGTAAAGTGAGTTGAGTATTTGTATGCTATGCCTCTTGTTTGGATTCTA 1550
Query 1388 GAAACAAGAGCTTCACTCCATTGTATAAAGTC 1419
||||||| ||||||||||||||||||||||||
Sbjct 1551 GAAACAATAGCTTCACTCCATTGTATAAAGTC 1582
> AT3G62090.2 | Symbols: PIL2, PIF6 | phytochrome interacting factor
3-like 2 | chr3:22988547-22990709 REVERSE LENGTH=1805
Length=1805
Score = 228 bits (123), Expect = 1e-58
Identities = 140/148 (95%), Gaps = 1/148 (1%)
Strand=Plus/Minus
Query 1272 TCTCTTCTCTTCTTGTTGTACTTAAGAGAAGAAATACACTCGGTATCATATAGATAGAAT 1331
|||||||||||| |||||| ||| || |||||||||||||| |||||||||| |||||||
Sbjct 1805 TCTCTTCTCTTCCTGTTGTTCTT-AGTGAAGAAATACACTCAGTATCATATAAATAGAAT 1747
Query 1332 AGAACCGGGTAAAGTGAGTTGAGTATTTGTATGCTATGCCTCTTGTTCGGATTCTAGAAA 1391
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1746 AGAACCGGGTAAAGTGAGTTGAGTATTTGTATGCTATGCCTCTTGTTTGGATTCTAGAAA 1687
Query 1392 CAAGAGCTTCACTCCATTGTATAAAGTC 1419
||| ||||||||||||||||||||||||
Sbjct 1686 CAATAGCTTCACTCCATTGTATAAAGTC 1659
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72539787525
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5