BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg485328
Length=1477
Score E
Sequences producing significant alignments: (Bits) Value
AT3G49680.1 | Symbols: ATBCAT-3, BCAT3 | branched-chain aminotr... 2108 0.0
> AT3G49680.1 | Symbols: ATBCAT-3, BCAT3 | branched-chain aminotransferase
3 | chr3:18422649-18425693 FORWARD LENGTH=1581
Length=1581
Score = 2108 bits (1141), Expect = 0.0
Identities = 1342/1437 (93%), Gaps = 22/1437 (2%)
Strand=Plus/Plus
Query 46 AGACACATTGTGAAGATAG--AAAAATGGAGAGAGCTGCGATTCTCCCGAGTGTGAATCA 103
||||||||||||||||||| ||||||||||||||| || |||||||||||||| |||||
Sbjct 95 AGACACATTGTGAAGATAGAAAAAAATGGAGAGAGCAGCAATTCTCCCGAGTGTTAATCA 154
Query 104 AAATTACCTACTTTGCCCTTCACGCGCCTTCTCCACCCGCCTCCACTCTTTCTCCTCTAC 163
||||||||||||||| |||||||||||||||||||| |||||||| |||||||||
Sbjct 155 AAATTACCTACTTTGTCCTTCACGCGCCTTCTCCACGCGCCTCCA------CTCCTCTAC 208
Query 164 TCGTAACTTCTCGCCGCCGTCATTTTCCTCCATCAAGCTTCAATATTTTTCTTCCTCTGT 223
||||||||| ||||||||||||||| |||||||||||||||| ||| |||||||||||
Sbjct 209 TCGTAACTTATCGCCGCCGTCATTTGCCTCCATCAAGCTTCAGCATTCTTCTTCCTCTG- 267
Query 224 ATCTTCCAATGTCAGCAATGGTGGAATCTCACTTACTCGATGCAACGCTG-TGCTGTCCA 282
| || | | || |||||||||||||| ||||||||||||||||||| | | |||||
Sbjct 268 -T-TT-C--T-TC--TAATGGTGGAATCTCTCTTACTCGATGCAACGCTGTTTC-GTCCA 318
Query 283 ATTCTTCCAGTACGGAGGTGTCTGAAGTAGCCGACATAGATTGGGATAACATTGGATTTG 342
|||||||||||||| ||| ||||| ||||||||||||||||||||| | |||||||||
Sbjct 319 ATTCTTCCAGTACGTTGGTAACTGAATTAGCCGACATAGATTGGGATACCGTTGGATTTG 378
Query 343 GGCTTAAGCCGA-CTGATTACATGTATGTGATGAAATGTAACATCGATGGAGAATTCTCA 401
|||||||||| | ||||||| ||||||||||||||||||||||| |||||||| ||||||
Sbjct 379 GGCTTAAGCC-AGCTGATTATATGTATGTGATGAAATGTAACATTGATGGAGAGTTCTCA 437
Query 402 AAAGGTGAATTGCAACGTTTTGGGAACATTGAAGTTAGCCCATCTGCTGGTGTTCTCAAC 461
|||||||| ||||||||||||||||| |||||| ||||||||||||||||||| ||||||
Sbjct 438 AAAGGTGAGTTGCAACGTTTTGGGAATATTGAAATTAGCCCATCTGCTGGTGTACTCAAC 497
Query 462 TATGGACAGGGATTGTTTGAAGGGCTAAAAGCTTACAGAAAGGAAGATGGTAATAACATT 521
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 498 TATGGACAGGGATTGTTTGAAGGGCTAAAAGCTTACAGAAAGAAAGATGGTAATAACATC 557
Query 522 CTCCTCTTTCGTCCTGAGGAGAATGCAAACCGTATGAGAAATGGTGCTGAGAGGATGTGT 581
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 558 CTCCTCTTTCGTCCTGAGGAGAATGCAAAGCGTATGAGAAATGGTGCTGAGAGGATGTGT 617
Query 582 ATGCCTGCTCCAACCGTTGAGCAGTTTGTCGAAGCTGTGAAAGAAACTGTATTAGCGAAC 641
||||||||||||||||||||||||||||| |||||||||| |||||||||| |||| |||
Sbjct 618 ATGCCTGCTCCAACCGTTGAGCAGTTTGTAGAAGCTGTGACAGAAACTGTACTAGCAAAC 677
Query 642 AAACGTTGGGTTCCGCCACCAGGTAAAGGTTCCTTATATGTCAGACCGTTGCTAATGGGA 701
|||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 678 AAACGTTGGGTTCCACCACCAGGTAAAGGTTCCTTATATGTTAGACCATTGCTAATGGGA 737
Query 702 ACAGGAGCTGTTCTTGGTCTTGCGCCTGCACCAGAATATACTTTCATTATCTATGTTTCG 761
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 738 ACAGGAGCTGTTCTTGGTCTTGCGCCTGCACCAGAATATACTTTCATTATCTATGTTTCG 797
Query 762 CCTGTCGGGAACTACTTCAAGGAAGGTGTGGCACCGATCAATTTGATTGTGGAAAATGAA 821
||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 798 CCTGTTGGGAACTACTTCAAGGAAGGTGTGGCACCTATCAATTTGATTGTGGAGAATGAA 857
Query 822 TTTCACCGTGCAACTCCTGGTGGTACCGGAGGTGTTAAAACCATCGGCAATTATGCTGCA 881
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 858 TTTCACCGTGCAACTCCTGGTGGTACCGGAGGTGTTAAAACCATAGGCAATTATGCTGCA 917
Query 882 GTACTGAAGGCACAGTCGATTGCGAAAGCCAAAGGATATTCCGATGTTTTGTACCTTGAT 941
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 918 GTACTGAAGGCACAGTCAATTGCGAAAGCTAAAGGATATTCCGATGTTTTGTACCTTGAT 977
Query 942 TGTGTTTACAAAAGATTTCTTGAGGAGGTCTCATCCTGCAATATTTTCATCGTGAAGGAC 1001
|| |||||||||||| ||||||||||||||| || ||||||||||||||||||||||||
Sbjct 978 TGCATTTACAAAAGATATCTTGAGGAGGTCTCGTCTTGCAATATTTTCATCGTGAAGGAC 1037
Query 1002 AATGTGATCTCTACTCCTGAAATAAAAGGAACCATTTTACCTGGGATCACACGGAAAAGT 1061
|||||||| |||||||||||||||||||||||||||||||| || || || || ||||||
Sbjct 1038 AATGTGATATCTACTCCTGAAATAAAAGGAACCATTTTACCCGGTATTACTCGAAAAAGT 1097
Query 1062 ATAATAGACGTGGCTCGAACTCAAGGGTTTCAGGTGGAGGAACGGAATGTGACAGTGGAT 1121
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1098 ATGATAGACGTGGCTCGAACACAAGGGTTTCAGGTGGAGGAACGGAATGTGACAGTGGAT 1157
Query 1122 GAATTATTAGAAGCGGATGAGGTTTTCTGCACAGGAACCGCCGTGGTTGTCTCTCCAGTT 1181
||||| |||||||| || |||||||||||||||||||||||||||||||||||||| |||
Sbjct 1158 GAATTGTTAGAAGCAGACGAGGTTTTCTGCACAGGAACCGCCGTGGTTGTCTCTCCTGTT 1217
Query 1182 GGAAGCGTTACTTACAAAGGCAAAAGAGTGTCTTATGGAGAAGGTACCTTCGGAACTGTC 1241
|||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1218 GGAAGCGTCACTTACAAAGGCAAAAGAGTGTCTTACGGAGAAGGTACCTTCGGAACTGTG 1277
Query 1242 TCGAAGCAACTCTACACTGTTCTGACAAGCTTGCAGATGGGTCTGATTGAAGACAACATG 1301
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1278 TCGAAGCAACTCTACACCGTTCTGACAAGCTTGCAGATGGGTCTGATTGAAGACAACATG 1337
Query 1302 AAATGGACTGTGAATCTGAGTTAAGCCAGGCAAATGCATTT-ATCAATTCGGCTGCTTGG 1360
||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1338 AAATGGACTGTGAATCTTAGTTAAGCCAGGCGAATGCATTGCATCAATTCGGCTGCTTGG 1397
Query 1361 TTTTGTTTTCTTTTCTTTGGTCTGTGATTCTGATTCGTGAAACTATAAGTTGGATTGTTT 1420
||||| |||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct 1398 TTTTGCTTTCTTTTCTTTGGTCTGTGGTTCTGATTCGTGAAACTATGAGTTGGATTGTTT 1457
Query 1421 AGAATCTGGTCGATCTAGAACTTAGCTGGTTCAAGATCAGTAGATGTTGTTACATCA 1477
|||||||||| |||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1458 AGAATCTGGTTGATCTAGAACTTAGCTGGTTCAAGATCATTAGATGTTGTTGCATCA 1514
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72840990795
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5